Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p32690 Brassica napus
A06p43750 Brassica napus
A08p24520 Brassica napus
A09p36140 Brassica napus
Aa31LG2G7770 Aethionema arabicum
Aa31LG6G5430 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5460 Anthoceros agrestis
Actinidia03347 Actinidia chinensis
Actinidia30192 Actinidia chinensis
Actinidia32345 Actinidia chinensis
Actinidia39591 Actinidia chinensis
Ah.02g120700 Amaranthus hybridus
AL1G44260 Arabidopsis lyrata
AL5G11450 Arabidopsis lyrata
Aqoxy3G04220 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.320UH0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5G4PYE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H5LZNT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PUF5Z4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VMT0UR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X1RNA0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XA2RWL Arachis hypogaea
AT1G30320 Arabidopsis thaliana
AT2G02170 Arabidopsis thaliana
ATR0618G051 Amborella trichopoda
ATR1098G011 Amborella trichopoda
Atru.chr10.1072 Acer truncatum
Atru.chr10.1073 Acer truncatum
Atru.chr11.1045 Acer truncatum
AUR62002679 Chenopodium quinoa
AUR62003527 Chenopodium quinoa
AUR62017841 Chenopodium quinoa
AUR62030132 Chenopodium quinoa
BcaB03g12209 Brassica carinata
BcaB07g30352 Brassica carinata
BcaB07g32641 Brassica carinata
BcaC01g00183 Brassica carinata
BcaC03g17121 Brassica carinata
BcaC05g27063 Brassica carinata
BcaC06g31246 Brassica carinata
BcaC06g34069 Brassica carinata
BNapus_Darmor_BZH_scaffold_145p00120 Brassica napus
BolC2t11112H Brassica oleracea
BolC3t19923H Brassica oleracea
BolC5t31654H Brassica oleracea
BolC7t43817H Brassica oleracea
BraA06t27253Z Brassica rapa
BraA08t34408Z Brassica rapa
BraA09t39141Z Brassica rapa
C02p50300 Brassica napus
C03p76670 Brassica napus
C05p29220 Brassica napus
C07p33070 Brassica napus
CAN.G282.81 Capsicum annuum
CAN.G90.10 Capsicum annuum
CANSAT35G0357 Cannabis sativa
CANSAT78G2048 Cannabis sativa
CARHR029700 Cardamine hirsuta
CARHR144840 Cardamine hirsuta
Carub.0001s2854 Capsella rubella
Carub.0005s0124 Capsella rubella
Ca_18160_v3 Cicer arietinum L.
Ca_18210_v3 Cicer arietinum L.
Cc09_g08760 Coffea canephora
Cc11_g03240 Coffea canephora
CDE04G0609 Ceratophyllum demersum
CDE04G2510 Ceratophyllum demersum
CDE05G0382 Ceratophyllum demersum
CDE05G0828 Ceratophyllum demersum
CDE05G1253 Ceratophyllum demersum
CDE07G1155 Ceratophyllum demersum
Cfa000896 Carpinus fangiana
Cfa021918 Carpinus fangiana
Ciclev10004714m.g Citrus clementina
Ciclev10014853m.g Citrus clementina
CiPaw.05G163000 Carya illinoinensis
CiPaw.09G119500 Carya illinoinensis
CiPaw.10G088700 Carya illinoinensis
ClCG01G024900 Citrullus lanatus
ClCG11G000810 Citrullus lanatus
COL.COLO4_16621 Corchorus olitorius
COL.COLO4_31008 Corchorus olitorius
Cpa.g.sc17.51 Carica papaya
Cpa.g.sc2.58 Carica papaya
CsaV3_5G012590 Cucumis sativus L.
CsaV3_5G012800 Cucumis sativus L.
CsaV3_6G052050 Cucumis sativus L.
CSS0004223 Camellia sinensis var. sinensis
CSS0023204 Camellia sinensis var. sinensis
CSS0041267 Camellia sinensis var. sinensis
DCAR_003886 Daucus carota
DCAR_003887 Daucus carota
DCAR_007871 Daucus carota
DCAR_027887 Daucus carota
DCAR_030330 Daucus carota
Dinv12448 Davidia involucrata
Dinv12783 Davidia involucrata
Dinv12784 Davidia involucrata
Dinv28152 Davidia involucrata
Dinv32212 Davidia involucrata
Duzib160G0180 Durio zibethinus
Duzib192G0720 Durio zibethinus
Duzib235G1098 Durio zibethinus
Duzib248G0063 Durio zibethinus
Duzib251G0752 Durio zibethinus
Duzib268G0126 Durio zibethinus
ECA236G4122 Erigeron canadensis
EL10Ac6g15353 Beta vulgaris
EL10Ac8g19626 Beta vulgaris
Eucgr.D00265 Eucalyptus grandis
Eucgr.J01777 Eucalyptus grandis
FAN07G1606 Fragaria x ananassa
FAN11G3406 Fragaria x ananassa
FAN12G3126 Fragaria x ananassa
FAN16G3322 Fragaria x ananassa
FAN17G2217 Fragaria x ananassa
FAN21G3882 Fragaria x ananassa
FAN22G0857 Fragaria x ananassa
FAN25G0203 Fragaria x ananassa
FvH4_3g05020 Fragaria vesca
FvH4_4g36350 Fragaria vesca
Glyma.05G135700 Glycine max
Glyma.05G143500 Glycine max
Glyma.08G090800 Glycine max
Glyma.08G099900 Glycine max
Glyma.08G231800 Glycine max
Gohir.A01G145800 Gossypium hirsutum
Gohir.A05G146300 Gossypium hirsutum
Gohir.A10G044000 Gossypium hirsutum
Gohir.D01G138400 Gossypium hirsutum
Gohir.D05G148600 Gossypium hirsutum
Gohir.D10G045200 Gossypium hirsutum
Gorai.002G167500 Gossypium raimondii
Gorai.009G152800 Gossypium raimondii
Gorai.011G048100 Gossypium raimondii
GSVIVG01010242001 Vitis vinifera
GSVIVG01021550001 Vitis vinifera
HanXRQChr04g0116471 Helianthus annuus
HanXRQChr08g0211741 Helianthus annuus
HanXRQChr15g0481901 Helianthus annuus
HanXRQChr16g0526481 Helianthus annuus
Haze_01564 Corylus avellana
Haze_05685 Corylus avellana
Hma1.2p1_0586F.1_g183850 Hydrangea macrophylla
HPP92_005081 Vanilla planifolia
HPP92_019501 Vanilla planifolia
Hund04378 Selenicereus undatus
Hund17751 Selenicereus undatus
Lalb_Chr07g0187481 Lupinus albus
Lalb_Chr07g0188081 Lupinus albus
Lalb_Chr12g0209221 Lupinus albus
Lalb_Chr13g0294021 Lupinus albus
Lj1C1169T6 Lonicera japonica
Lj2A322T64 Lonicera japonica
Lj4g0002360 Lotus japonicus
Lj4g0021792 Lotus japonicus
Lj6C724G6 Lonicera japonica
Lsat_1_v5_gn_1_42040 Lactuca sativa
Lsat_1_v5_gn_4_26141 Lactuca sativa
Lsat_1_v5_gn_4_74281 Lactuca sativa
Lsat_1_v5_gn_7_27321 Lactuca sativa
Manes.10G068300 Manihot esculenta
Manes.15G125100 Manihot esculenta
Manes.17G074250 Manihot esculenta
Mapoly0109s0057 Marchantia polymorpha
MBI18_g11217_MAGBIO Magnolia biondii
MD05G1279300 Malus domestica
MD10G1258000 Malus domestica
MD13G1009800 Malus domestica
MD16G1008100 Malus domestica
Medtr8g079482 Medicago truncatula
MELO3C007106.2 Cucumis melo
MELO3C022596.2 Cucumis melo
Migut.M00879 Erythranthe guttata
Migut.M01861 Erythranthe guttata
MSTRG.16265 Avicennia marina
MSTRG.7514 Avicennia marina
Nitab4.5_0000069g0620 Nicotiana tabacum
Nitab4.5_0000315g0020 Nicotiana tabacum
Nitab4.5_0005655g0020 Nicotiana tabacum
Nitab4.5_0007743g0050 Nicotiana tabacum
Nn3g18710 Nelumbo nucifera
Nn3g20327 Nelumbo nucifera
Nn4g26635 Nelumbo nucifera
Nn5g27865 Nelumbo nucifera
Oeu006354.3 Olea europaea
Oeu015212.1 Olea europaea
Oeu031315.1 Olea europaea
Oeu038678.1 Olea europaea
Os02g0116800 Oryza sativa ssp. japonica
Os03g0120200 Oryza sativa ssp. japonica
Os04g0620200 Oryza sativa ssp. japonica
Os12g0613600 Oryza sativa ssp. japonica
Peaxi162Scf00045g02428 Petunia axillaris
Peaxi162Scf00097g01811 Petunia axillaris
Peaxi162Scf00465g00066 Petunia axillaris
PGR044G1216 Punica granatum
PGR083G0955 Punica granatum
PGSC0003DMG400012066 Solanum tuberosum
Phvul.002G177800 Phaseolus vulgaris
Phvul.002G186400 Phaseolus vulgaris
Potri.001G358600 Populus trichocarpa
Potri.008G144300 Populus trichocarpa
Potri.010G098000 Populus trichocarpa
Pp3c13_11640 Physcomitrium patens
Pp3c14_21250 Physcomitrium patens
Pp3c17_20270 Physcomitrium patens
Pp3c26_11400 Physcomitrium patens
Pp3c3_9830 Physcomitrium patens
Pp3c4_17800 Physcomitrium patens
Prupe.1G342800 Prunus persica
Prupe.4G085800 Prunus persica
Psat7g078600 Pisum sativum
Psat7g086280 Pisum sativum
PSO063G7477 Papaver somniferum
PSO541G1681 Papaver somniferum
PSO675G2568 Papaver somniferum
PSO782G1794 Papaver somniferum
QL02p029395 Quercus lobata
QL03p041928 Quercus lobata
QL05p055058 Quercus lobata
RcHm_v2.0_Chr4g0446081 Rosa chinensis
RcHm_v2.0_Chr5g0014951 Rosa chinensis
Rhsim09G0075000 Rhododendron simsii
Rhsim12G0064800 Rhododendron simsii
Rhsim12G0102800 Rhododendron simsii
Rhsim13G0118000 Rhododendron simsii
RhsimUnG0003400 Rhododendron simsii
Sabra08G0109300 Salix brachista
Sabra10G0070600 Salix brachista
Sabra16G0236400 Salix brachista
SalBow8G1983 Salvia bowleyana
Sc17g0004790 Simmondsia chinensis
Sed0000189 Sechium edule
Sed0007665 Sechium edule
Sed0013249 Sechium edule
Sed0014194 Sechium edule
SEGI_21805 Sequoiadendron giganteum
SEGI_29969 Sequoiadendron giganteum
SGA_v2.0_scaffold223G42825 Striga asiatica
SMO143G0014 Selaginella moellendorffii
SMO146G0299 Selaginella moellendorffii
SMO169G0234 Selaginella moellendorffii
SMO265G0055 Selaginella moellendorffii
Solyc01g008180.3 Solanum lycopersicum
Solyc08g045640.3 Solanum lycopersicum
Sopen01g003720 Solanum pennellii
Sopen08g014470 Solanum pennellii
Sp1g26180 Schrenkiella parvula
Sp2g13580 Schrenkiella parvula
TAR382G0001 Trochodendron aralioides
TAR627G0788 Trochodendron aralioides
TAR627G0828 Trochodendron aralioides
TAR629G2085 Trochodendron aralioides
TAR633G1450 Trochodendron aralioides
THA.LOC104812681 Tarenaya hassleriana
THA.LOC104814313 Tarenaya hassleriana
THA.LOC104820668 Tarenaya hassleriana
THA.LOC104824101 Tarenaya hassleriana
Thecc.02G295500 Theobroma cacao
Thecc.06G144200 Theobroma cacao
Thhalv10004200m.g Eutrema salsugineum
Thhalv10007414m.g Eutrema salsugineum
TPR.G34762 Trifolium pratense
TPR.G9577 Trifolium pratense
TWI09G0860 Tripterygium wilfordii
TWI73G0305 Tripterygium wilfordii
TWI77G0990 Tripterygium wilfordii
unitig_37.g12086 Utricularia gibba
unitig_92.g28168 Utricularia gibba
vmacro03430 Vaccinium macrocarpon
vmacro10788 Vaccinium macrocarpon
VMungo0251G0662 Vigna mungo
VMungo0251G2807 Vigna mungo
Zm00001eb001510 Zea mays
Zm00001eb070390 Zea mays
Zm00001eb136120 Zea mays
Zm00001eb209450 Zea mays
Zm00001eb403800 Zea mays

User provided reference genes

Program Settings