Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p16440 Brassica napus
A07p15720 Brassica napus
A07p15820 Brassica napus
Aa31LG6G16720 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1367 Anthoceros agrestis
Actinidia15504 Actinidia chinensis
Actinidia17054 Actinidia chinensis
Actinidia20574 Actinidia chinensis
Ah.00g000980 Amaranthus hybridus
Ah.01g009980 Amaranthus hybridus
AL1G32820 Arabidopsis lyrata
AL1G33190 Arabidopsis lyrata
AL1G33200 Arabidopsis lyrata
AL1G33240 Arabidopsis lyrata
AL1G33280 Arabidopsis lyrata
AL1G33650 Arabidopsis lyrata
AL1G33720 Arabidopsis lyrata
AL1G33730 Arabidopsis lyrata
AL7G10180 Arabidopsis lyrata
Aqoxy5G01016 Aquilegia oxysepala
Aqoxy6G01627 Aquilegia oxysepala
Aqoxy6G01629 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2A5IMX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3EW4YP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7ZS4RD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8JHM47 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A60U00 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GNFD84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IV5MN0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MQFJ1E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NMYG6B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WLS118 Arachis hypogaea
AT1G20405 Arabidopsis thaliana
AT1G20680 Arabidopsis thaliana
AT1G20730 Arabidopsis thaliana
AT1G20740 Arabidopsis thaliana
AT4G38260 Arabidopsis thaliana
ATR0807G031 Amborella trichopoda
ATR0807G200 Amborella trichopoda
Atru.chr13.119 Acer truncatum
Atru.chr5.3538 Acer truncatum
AUR62010169 Chenopodium quinoa
AUR62013170 Chenopodium quinoa
AUR62035130 Chenopodium quinoa
AUR62040820 Chenopodium quinoa
BcaB07g32039 Brassica carinata
BcaC05g25946 Brassica carinata
BcaNung01993 Brassica carinata
BcaNung03375 Brassica carinata
BNapus_Darmor_BZH_scaffold_146p00100 Brassica napus
BolC5t30598H Brassica oleracea
BolC7t42847H Brassica oleracea
BolC7t46792H Brassica oleracea
BraA06t24748Z Brassica rapa
BraA06t27776Z Brassica rapa
BraA07t29308Z Brassica rapa
BraA07t29315Z Brassica rapa
C05p18980 Brassica napus
C07p23100 Brassica napus
CAN.G311.129 Capsicum annuum
CAN.G566.28 Capsicum annuum
CANSAT25G2103 Cannabis sativa
CARHR294050 Cardamine hirsuta
Carub.0001s2782 Capsella rubella
Carub.0001s3067 Capsella rubella
Carub.0001s3068 Capsella rubella
Carub.0001s3069 Capsella rubella
Carub.0001s3070 Capsella rubella
Carub.0004s0097 Capsella rubella
Carub.0004s0098 Capsella rubella
Carub.0004s0896 Capsella rubella
Carub.0004s1067 Capsella rubella
Carub.0004s1092 Capsella rubella
Carub.0004s1093 Capsella rubella
Carub.0004s1094 Capsella rubella
Carub.0004s1095 Capsella rubella
Carub.0007s0020 Capsella rubella
Carub.0007s2762 Capsella rubella
Carub.0008s0973 Capsella rubella
Carub.0008s2041 Capsella rubella
Ca_15236_v3 Cicer arietinum L.
Ca_18786_v3 Cicer arietinum L.
CBR_g9156 Chara braunii
Cc11_g00860 Coffea canephora
Cc11_g00870 Coffea canephora
CDE05G1273 Ceratophyllum demersum
CDE05G2096 Ceratophyllum demersum
Cfa005361 Carpinus fangiana
Cfa014100 Carpinus fangiana
Ciclev10002169m.g Citrus clementina
Ciclev10029078m.g Citrus clementina
CiPaw.05G092500 Carya illinoinensis
CiPaw.08G074600 Carya illinoinensis
CiPaw.10G100400 Carya illinoinensis
ClCG02G009980 Citrullus lanatus
COL.COLO4_07264 Corchorus olitorius
COL.COLO4_13669 Corchorus olitorius
COL.COLO4_22926 Corchorus olitorius
COL.COLO4_32090 Corchorus olitorius
COL.COLO4_34300 Corchorus olitorius
COL.COLO4_34301 Corchorus olitorius
COL.COLO4_34302 Corchorus olitorius
COL.COLO4_36415 Corchorus olitorius
Cpa.g.sc26.179 Carica papaya
Cpa.g.sc26.180 Carica papaya
Cpa.g.sc60.22 Carica papaya
Cpa.g.sc60.25 Carica papaya
Cre12.g548550 Chlamydomonas reinhardtii
CsaV3_1G014380 Cucumis sativus L.
CSS0029805 Camellia sinensis var. sinensis
CSS0038306 Camellia sinensis var. sinensis
CSS0044495 Camellia sinensis var. sinensis
CSS0050132 Camellia sinensis var. sinensis
DCAR_015658 Daucus carota
DCAR_016782 Daucus carota
Dinv30632 Davidia involucrata
Duzib052G0345 Durio zibethinus
Duzib093G2187 Durio zibethinus
Duzib132G0074 Durio zibethinus
Duzib248G0135 Durio zibethinus
ECA232G2913 Erigeron canadensis
ECA234G3128 Erigeron canadensis
EL10Ac1g01920 Beta vulgaris
EL10Ac9g21525 Beta vulgaris
Eucgr.F03570 Eucalyptus grandis
Eucgr.I01526 Eucalyptus grandis
Eucgr.I01527 Eucalyptus grandis
Eucgr.I01528 Eucalyptus grandis
Eucgr.I01529 Eucalyptus grandis
FAN13G0446 Fragaria x ananassa
FAN15G1339 Fragaria x ananassa
FAN15G2834 Fragaria x ananassa
FAN18G2152 Fragaria x ananassa
FAN24G0710 Fragaria x ananassa
FAN24G1149 Fragaria x ananassa
FAN27G1913 Fragaria x ananassa
FAN27G2621 Fragaria x ananassa
FvH4_2g16700 Fragaria vesca
FvH4_2g16710 Fragaria vesca
FvH4_5g25460 Fragaria vesca
Glyma.04G104100 Glycine max
Glyma.06G105100 Glycine max
Glyma.14G171100 Glycine max
Glyma.20G023900 Glycine max
Gohir.A01G104400 Gossypium hirsutum
Gohir.A01G104500 Gossypium hirsutum
Gohir.A04G112036 Gossypium hirsutum
Gohir.D01G089500 Gossypium hirsutum
Gohir.D01G089600 Gossypium hirsutum
Gohir.D01G089700 Gossypium hirsutum
Gohir.D04G152600 Gossypium hirsutum
Gorai.002G115200 Gossypium raimondii
Gorai.002G115300 Gossypium raimondii
Gorai.002G115400 Gossypium raimondii
Gorai.004G053800 Gossypium raimondii
Gorai.012G139400 Gossypium raimondii
GSVIVG01013382001 Vitis vinifera
GSVIVG01023875001 Vitis vinifera
HanXRQChr05g0144861 Helianthus annuus
HanXRQChr10g0298371 Helianthus annuus
HanXRQChr14g0428891 Helianthus annuus
Haze_02010 Corylus avellana
Haze_22816 Corylus avellana
Hma1.2p1_0271F.1_g108820 Hydrangea macrophylla
Hma1.2p1_2860F.1_g329520 Hydrangea macrophylla
HPP92_007115 Vanilla planifolia
HPP92_014560 Vanilla planifolia
Hund06366 Selenicereus undatus
Lalb_Chr16g0385401 Lupinus albus
Lj1g0007759 Lotus japonicus
Lj1g0008009 Lotus japonicus
Lj1g0009040 Lotus japonicus
Lj4A8T62 Lonicera japonica
Lj4g0007592 Lotus japonicus
Lj9A407T53 Lonicera japonica
Lsat_1_v5_gn_4_71461 Lactuca sativa
Lsat_1_v5_gn_8_65101 Lactuca sativa
Lsat_1_v5_gn_9_104040 Lactuca sativa
Lsat_1_v5_gn_9_45401 Lactuca sativa
Manes.17G116200 Manihot esculenta
Manes.18G004000 Manihot esculenta
Mapoly0025s0050 Marchantia polymorpha
MBI08_g12262_MAGBIO Magnolia biondii
MCO02G446 Micromonas commoda
MD05G1135200 Malus domestica
MD06G1010300 Malus domestica
Medtr3g074080 Medicago truncatula
Medtr4g083440 Medicago truncatula
MELO3C004825.2 Cucumis melo
Migut.N01356 Erythranthe guttata
Migut.N02967 Erythranthe guttata
MSTRG.24500 Avicennia marina
MSTRG.24501 Avicennia marina
MSTRG.24925 Avicennia marina
Nitab4.5_0000019g0150 Nicotiana tabacum
Nitab4.5_0003650g0020 Nicotiana tabacum
Nitab4.5_0004470g0040 Nicotiana tabacum
Nn5g30981 Nelumbo nucifera
Oeu035849.1 Olea europaea
Oeu051841.1 Olea europaea
Os04g0564500 Oryza sativa ssp. japonica
Os09g0323500 Oryza sativa ssp. japonica
Peaxi162Scf00276g00010 Petunia axillaris
Peaxi162Scf00711g00114 Petunia axillaris
Peaxi162Scf01256g00009 Petunia axillaris
PGR031G3846 Punica granatum
PGR142G0711 Punica granatum
PGR142G3675 Punica granatum
PGSC0003DMG400009910 Solanum tuberosum
PGSC0003DMG400021924 Solanum tuberosum
Phvul.002G100700 Phaseolus vulgaris
Phvul.009G029500 Phaseolus vulgaris
Potri.004G206300 Populus trichocarpa
Potri.005G252250 Populus trichocarpa
Pp3c3_18600 Physcomitrium patens
Prupe.8G179100 Prunus persica
Psat5g137360 Pisum sativum
Psat7g132880 Pisum sativum
PSO210G2118 Papaver somniferum
PSO541G1642 Papaver somniferum
PSO675G1298 Papaver somniferum
QL02p014695 Quercus lobata
QL11p056175 Quercus lobata
RcHm_v2.0_Chr6g0280841 Rosa chinensis
RcHm_v2.0_Chr7g0215641 Rosa chinensis
Rhsim06G0006000 Rhododendron simsii
Rhsim11G0197700 Rhododendron simsii
Sabra04G0139000 Salix brachista
Sabra05G0195700 Salix brachista
SalBow5G0553 Salvia bowleyana
SalBow5G1992 Salvia bowleyana
SalBow6G6237 Salvia bowleyana
Sc15g0004350 Simmondsia chinensis
Sc18g0005900 Simmondsia chinensis
Sed0012832 Sechium edule
SEGI_23230 Sequoiadendron giganteum
SGA_v2.0_scaffold54G19655 Striga asiatica
SGA_v2.0_scaffold80G25818 Striga asiatica
SMO361G0005 Selaginella moellendorffii
SMO361G0176 Selaginella moellendorffii
Solyc02g021340.4 Solanum lycopersicum
Solyc04g082540.2 Solanum lycopersicum
Sopen02g005810 Solanum pennellii
Sopen04g036160 Solanum pennellii
Sp1g18070 Schrenkiella parvula
Sp1g18080 Schrenkiella parvula
Sp1g18090 Schrenkiella parvula
Sp1g18100 Schrenkiella parvula
Sp1g18400 Schrenkiella parvula
Sp1g24840 Schrenkiella parvula
Sp3g31150 Schrenkiella parvula
Sp3g32010 Schrenkiella parvula
Sp3g32020 Schrenkiella parvula
Sp7g01350 Schrenkiella parvula
Sp7g37460 Schrenkiella parvula
SpUn0423_0010 Schrenkiella parvula
TAR376G0638 Trochodendron aralioides
TAR625G0295 Trochodendron aralioides
TAR628G1478 Trochodendron aralioides
THA.LOC104807799 Tarenaya hassleriana
THA.LOC104813749 Tarenaya hassleriana
Thecc.02G145400 Theobroma cacao
Thecc.08G061200 Theobroma cacao
Thhalv10008393m.g Eutrema salsugineum
Thhalv10009925m.g Eutrema salsugineum
Thhalv10021358m.g Eutrema salsugineum
Thhalv10025979m.g Eutrema salsugineum
TPR.G20305 Trifolium pratense
TWI56G1293 Tripterygium wilfordii
TWI79G0257 Tripterygium wilfordii
unitig_578.g16236 Utricularia gibba
unitig_749.g13982 Utricularia gibba
vmacro02338 Vaccinium macrocarpon
vmacro21799 Vaccinium macrocarpon
vmacro22322 Vaccinium macrocarpon
VMungo0251G1387 Vigna mungo
VMungo1309G1227 Vigna mungo
Zm00001eb228600 Zea mays
Zm00001eb429120 Zea mays

User provided reference genes

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