Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06330 Brassica napus
A06p36640 Brassica napus
A10p19400 Brassica napus
Aa31LG1G14070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3713 Anthoceros agrestis
Actinidia03547 Actinidia chinensis
Actinidia03548 Actinidia chinensis
Actinidia03549 Actinidia chinensis
Actinidia25225 Actinidia chinensis
Actinidia29319 Actinidia chinensis
Actinidia39692 Actinidia chinensis
Ah.06g191330 Amaranthus hybridus
Ah.10g034060 Amaranthus hybridus
AL6G32150 Arabidopsis lyrata
AL6G38150 Arabidopsis lyrata
Aqoxy7G01120 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5R1TDK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FZSY62 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6V4H3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PL2FR1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PQ8YWC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RI6HQN Arachis hypogaea
AT5G20610 Arabidopsis thaliana
AT5G26160 Arabidopsis thaliana
ATR0051G040 Amborella trichopoda
Atru.chr7.1655 Acer truncatum
Atru.chr7.1892 Acer truncatum
Atru.chr7.1920 Acer truncatum
AUR62009105 Chenopodium quinoa
AUR62020562 Chenopodium quinoa
AUR62020566 Chenopodium quinoa
AUR62035534 Chenopodium quinoa
AUR62041655 Chenopodium quinoa
BcaB05g22830 Brassica carinata
BcaB08g36513 Brassica carinata
BcaC03g13774 Brassica carinata
BcaC04g19448 Brassica carinata
BcaNung02805 Brassica carinata
BcaNung03977 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p01500 Brassica napus
BolC2t07050H Brassica oleracea
BolC7t44718H Brassica oleracea
BolC9t58428H Brassica oleracea
BraA02t05581Z Brassica rapa
BraA06t26587Z Brassica rapa
BraA10t44017Z Brassica rapa
C07p41860 Brassica napus
C09p55620 Brassica napus
CAN.G148.12 Capsicum annuum
CAN.G6.28 Capsicum annuum
CANSAT21G0347 Cannabis sativa
CANSAT21G1198 Cannabis sativa
CANSAT56G3572 Cannabis sativa
CARHR187440 Cardamine hirsuta
CARHR187450 Cardamine hirsuta
CARHR192190 Cardamine hirsuta
Carub.0006s1894 Capsella rubella
Carub.0006s2394 Capsella rubella
Ca_13101_v3 Cicer arietinum L.
Ca_13145_v3 Cicer arietinum L.
Ca_21307_v3 Cicer arietinum L.
CBR_g19285 Chara braunii
CBR_g19296 Chara braunii
Cc00_g19330 Coffea canephora
Cc08_g11050 Coffea canephora
CDE04G0280 Ceratophyllum demersum
CDE04G1384 Ceratophyllum demersum
CDE06G2350 Ceratophyllum demersum
CDE06G2552 Ceratophyllum demersum
CDE06G2802 Ceratophyllum demersum
Cfa003040 Carpinus fangiana
Ciclev10007288m.g Citrus clementina
Ciclev10018589m.g Citrus clementina
CiPaw.03G210700 Carya illinoinensis
CiPaw.15G034800 Carya illinoinensis
ClCG03G015870 Citrullus lanatus
ClCG08G009980 Citrullus lanatus
COL.COLO4_18159 Corchorus olitorius
COL.COLO4_21106 Corchorus olitorius
Cpa.g.sc28.96 Carica papaya
CsaV3_1G040090 Cucumis sativus L.
CsaV3_1G040100 Cucumis sativus L.
CsaV3_1G040110 Cucumis sativus L.
CsaV3_6G032110 Cucumis sativus L.
CsaV3_UNG050360 Cucumis sativus L.
CsaV3_UNG050370 Cucumis sativus L.
CsaV3_UNG050380 Cucumis sativus L.
CSS0033177 Camellia sinensis var. sinensis
DCAR_024722 Daucus carota
Dinv12462 Davidia involucrata
Dinv36803 Davidia involucrata
Dinv42355 Davidia involucrata
Duzib150G1333 Durio zibethinus
Duzib168G0319 Durio zibethinus
Duzib187G0859 Durio zibethinus
ECA240G2622 Erigeron canadensis
EL10Ac2g03811 Beta vulgaris
EL10Ac4g08845 Beta vulgaris
Eucgr.C00674 Eucalyptus grandis
Eucgr.C03363 Eucalyptus grandis
Eucgr.C03402 Eucalyptus grandis
Eucgr.C03573 Eucalyptus grandis
FAN15G1044 Fragaria x ananassa
FAN19G2995 Fragaria x ananassa
FAN20G0845 Fragaria x ananassa
FAN23G0961 Fragaria x ananassa
FAN24G1890 Fragaria x ananassa
FAN26G1133 Fragaria x ananassa
FAN27G2975 Fragaria x ananassa
FvH4_1g08130 Fragaria vesca
FvH4_2g31410 Fragaria vesca
Glyma.09G067200 Glycine max
Glyma.13G107602 Glycine max
Glyma.14G100200 Glycine max
Glyma.15G173100 Glycine max
Glyma.17G051700 Glycine max
Glyma.17G224700 Glycine max
Gohir.A05G032600 Gossypium hirsutum
Gohir.A06G074700 Gossypium hirsutum
Gohir.A06G085400 Gossypium hirsutum
Gohir.A07G021100 Gossypium hirsutum
Gohir.A13G192400 Gossypium hirsutum
Gohir.D05G034000 Gossypium hirsutum
Gohir.D06G073500 Gossypium hirsutum
Gohir.D06G084700 Gossypium hirsutum
Gohir.D07G020800 Gossypium hirsutum
Gohir.D13G197800 Gossypium hirsutum
Gorai.001G021600 Gossypium raimondii
Gorai.009G034400 Gossypium raimondii
Gorai.010G085800 Gossypium raimondii
Gorai.010G098100 Gossypium raimondii
Gorai.013G226500 Gossypium raimondii
GSVIVG01015143001 Vitis vinifera
GSVIVG01015144001 Vitis vinifera
GSVIVG01035425001 Vitis vinifera
HanXRQChr01g0007551 Helianthus annuus
HanXRQChr03g0071421 Helianthus annuus
HanXRQChr09g0237961 Helianthus annuus
Haze_25960 Corylus avellana
HPP92_000546 Vanilla planifolia
HPP92_007634 Vanilla planifolia
HPP92_009122 Vanilla planifolia
Hund03305 Selenicereus undatus
Hund06847 Selenicereus undatus
Hund22234 Selenicereus undatus
Lalb_Chr08g0232461 Lupinus albus
Lalb_Chr11g0074371 Lupinus albus
Lalb_Chr12g0199991 Lupinus albus
Lalb_Chr24g0393651 Lupinus albus
Lj3A604T23 Lonicera japonica
Lj3A617T48 Lonicera japonica
Lj3A617T49 Lonicera japonica
Lj3C604T5 Lonicera japonica
Lj4C287T1 Lonicera japonica
Lj4C287T8 Lonicera japonica
Lj4g0007445 Lotus japonicus
Lj5g0018537 Lotus japonicus
Lj6g0023149 Lotus japonicus
Lj7A246T30 Lonicera japonica
Lj7C681T5 Lonicera japonica
Lsat_1_v5_gn_7_34780 Lactuca sativa
Lsat_1_v5_gn_7_60780 Lactuca sativa
Manes.03G037600 Manihot esculenta
Manes.03G051200 Manihot esculenta
Manes.16G098300 Manihot esculenta
Mapoly0025s0092 Marchantia polymorpha
MD02G1085800 Malus domestica
MD08G1067000 Malus domestica
MD08G1067600 Malus domestica
MD15G1054100 Malus domestica
MD15G1213000 Malus domestica
Medtr1g015120 Medicago truncatula
Medtr2g040970 Medicago truncatula
Medtr4g125670 Medicago truncatula
MELO3C011471.2 Cucumis melo
MELO3C015439.2 Cucumis melo
Migut.E01580 Erythranthe guttata
Migut.J00959 Erythranthe guttata
Migut.L01538 Erythranthe guttata
MSTRG.14071 Avicennia marina
MSTRG.19483 Avicennia marina
MSTRG.26455 Avicennia marina
Nitab4.5_0000024g0100 Nicotiana tabacum
Nitab4.5_0000286g0100 Nicotiana tabacum
Nitab4.5_0000286g0140 Nicotiana tabacum
Nitab4.5_0001488g0110 Nicotiana tabacum
Nitab4.5_0007106g0010 Nicotiana tabacum
Nitab4.5_0007605g0010 Nicotiana tabacum
Nn6g35567 Nelumbo nucifera
Nn8g38747 Nelumbo nucifera
Oeu000305.2 Olea europaea
Oeu017677.1 Olea europaea
Oeu034194.1 Olea europaea
Oeu035942.1 Olea europaea
Oeu046625.1 Olea europaea
Oeu051310.3 Olea europaea
Oeu063407.1 Olea europaea
Os01g0714100 Oryza sativa ssp. japonica
Peaxi162Scf00240g01425 Petunia axillaris
Peaxi162Scf00724g00037 Petunia axillaris
Peaxi162Scf01253g00021 Petunia axillaris
PGR031G1018 Punica granatum
PGR042G2577 Punica granatum
PGSC0003DMG400008209 Solanum tuberosum
PGSC0003DMG400010847 Solanum tuberosum
PGSC0003DMG400020948 Solanum tuberosum
Phvul.001G040750 Phaseolus vulgaris
Phvul.003G133300 Phaseolus vulgaris
Phvul.009G229300 Phaseolus vulgaris
Phvul.011G100700 Phaseolus vulgaris
Potri.006G145500 Populus trichocarpa
Potri.006G224200 Populus trichocarpa
Pp3c11_21020 Physcomitrium patens
Pp3c12_9200 Physcomitrium patens
Pp3c13_19830 Physcomitrium patens
Pp3c4_15310 Physcomitrium patens
Pp3c7_5770 Physcomitrium patens
Prupe.1G407600 Prunus persica
Prupe.7G203900 Prunus persica
Psat1g131160 Pisum sativum
Psat4g016920 Pisum sativum
Psat6g023840 Pisum sativum
PSO063G0623 Papaver somniferum
PSO832G2328 Papaver somniferum
QL02p061302 Quercus lobata
QL02p061430 Quercus lobata
RcHm_v2.0_Chr2g0094181 Rosa chinensis
RcHm_v2.0_Chr6g0311411 Rosa chinensis
Rhsim05G0013200 Rhododendron simsii
Sabra06G0115000 Salix brachista
Sabra06G0173400 Salix brachista
SalBow1G1264 Salvia bowleyana
SalBow1G6755 Salvia bowleyana
Sc08g0008720 Simmondsia chinensis
Sc09g0009960 Simmondsia chinensis
Sed0013845 Sechium edule
Sed0020434 Sechium edule
Sed0027355 Sechium edule
SEGI_02945 Sequoiadendron giganteum
SEGI_24965 Sequoiadendron giganteum
SGA_v2.0_scaffold169G38708 Striga asiatica
SGA_v2.0_scaffold21G09456 Striga asiatica
SGA_v2.0_scaffold97G29154 Striga asiatica
SMO164G0113 Selaginella moellendorffii
SMO200G0181 Selaginella moellendorffii
Solyc05g032750.3 Solanum lycopersicum
Solyc07g041180.4 Solanum lycopersicum
Solyc08g062500.3 Solanum lycopersicum
Sopen05g023740 Solanum pennellii
Sopen07g020450 Solanum pennellii
Sopen08g017980 Solanum pennellii
Sp2g21580 Schrenkiella parvula
Sp6g23870 Schrenkiella parvula
TAR624G0197 Trochodendron aralioides
TAR624G0287 Trochodendron aralioides
TAR624G1197 Trochodendron aralioides
THA.LOC104799617 Tarenaya hassleriana
THA.LOC104811229 Tarenaya hassleriana
Thecc.09G059000 Theobroma cacao
Thecc.09G082100 Theobroma cacao
Thhalv10003582m.g Eutrema salsugineum
Thhalv10012496m.g Eutrema salsugineum
TPR.G32039 Trifolium pratense
TPR.G38863 Trifolium pratense
TPR.G509 Trifolium pratense
TPR.G9463 Trifolium pratense
TWI34G1004 Tripterygium wilfordii
TWI63G0175 Tripterygium wilfordii
unitig_699.g19422 Utricularia gibba
unitig_749.g13833 Utricularia gibba
unitig_85.g27253 Utricularia gibba
vmacro17170 Vaccinium macrocarpon
VMungo0464G0983 Vigna mungo
VMungo0647G0209 Vigna mungo
VMungo1215G0667 Vigna mungo
VMungo1309G0593 Vigna mungo
Zm00001eb155000 Zea mays
Zm00001eb163740 Zea mays
Zm00001eb285470 Zea mays
Zm00001eb361450 Zea mays

User provided reference genes

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