Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p43130 Brassica napus
A08p28650 Brassica napus
A09p42740 Brassica napus
Aa31LG4G7940 Aethionema arabicum
Aa31LG7G6020 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2059 Anthoceros agrestis
Actinidia00201 Actinidia chinensis
Actinidia02590 Actinidia chinensis
Actinidia23306 Actinidia chinensis
Actinidia39028 Actinidia chinensis
Ah.05g172760 Amaranthus hybridus
AL1G35440 Arabidopsis lyrata
AL2G38090 Arabidopsis lyrata
Aqoxy5G02457 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3QQV9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.95QHYM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BKBE25 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EG08JD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QF5GL7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QVR4YF Arachis hypogaea
AT1G22030 Arabidopsis thaliana
AT1G77855 Arabidopsis thaliana
ATR0691G131 Amborella trichopoda
ATR1134G091 Amborella trichopoda
Atru.chr13.1303 Acer truncatum
Atru.chr3.1576 Acer truncatum
Atru.chr3.1595 Acer truncatum
AUR62004681 Chenopodium quinoa
AUR62023599 Chenopodium quinoa
BcaB03g11895 Brassica carinata
BcaB03g15916 Brassica carinata
BcaB07g32222 Brassica carinata
BcaC05g26128 Brassica carinata
BcaC05g26129 Brassica carinata
BcaC07g39139 Brassica carinata
BolC5t30804H Brassica oleracea
BolC6t40200H Brassica oleracea
BolC8t49770H Brassica oleracea
BraA07t31835Z Brassica rapa
BraA08t34795Z Brassica rapa
BraA09t39749Z Brassica rapa
C05p21060 Brassica napus
C06p51780 Brassica napus
C08p21290 Brassica napus
CAN.G393.1 Capsicum annuum
CAN.G798.17 Capsicum annuum
CANSAT11G2468 Cannabis sativa
CANSAT25G0157 Cannabis sativa
CARHR022380 Cardamine hirsuta
CARHR071340 Cardamine hirsuta
Carub.0001s2157 Capsella rubella
Carub.0002s2475 Capsella rubella
Ca_00064_v3 Cicer arietinum L.
Ca_17829_v3 Cicer arietinum L.
Cc00_g04220 Coffea canephora
Cc02_g22720 Coffea canephora
CDE06G0992 Ceratophyllum demersum
CDE08G1366 Ceratophyllum demersum
Cfa015357 Carpinus fangiana
Cfa015948 Carpinus fangiana
Cfa021316 Carpinus fangiana
Ciclev10001805m.g Citrus clementina
Ciclev10001863m.g Citrus clementina
CiPaw.05G049200 Carya illinoinensis
CiPaw.05G230400 Carya illinoinensis
CiPaw.06G023800 Carya illinoinensis
CiPaw.06G146000 Carya illinoinensis
ClCG05G009550 Citrullus lanatus
ClCG08G010880 Citrullus lanatus
COL.COLO4_11776 Corchorus olitorius
COL.COLO4_16527 Corchorus olitorius
Cpa.g.sc49.117 Carica papaya
CsaV3_1G023060 Cucumis sativus L.
CsaV3_3G019170 Cucumis sativus L.
CSS0007134 Camellia sinensis var. sinensis
CSS0010107 Camellia sinensis var. sinensis
CSS0019481 Camellia sinensis var. sinensis
CSS0045894 Camellia sinensis var. sinensis
DCAR_004028 Daucus carota
DCAR_006696 Daucus carota
DCAR_014273 Daucus carota
DCAR_025346 Daucus carota
Dinv15084 Davidia involucrata
Dinv19383 Davidia involucrata
Dinv24298 Davidia involucrata
Dinv27395 Davidia involucrata
Duzib041G0508 Durio zibethinus
Duzib052G0194 Durio zibethinus
Duzib093G2137 Durio zibethinus
Duzib116G0924 Durio zibethinus
Duzib132G1252 Durio zibethinus
Duzib248G0172 Durio zibethinus
ECA236G3408 Erigeron canadensis
ECA240G4074 Erigeron canadensis
EL10Ac1g00051 Beta vulgaris
Eucgr.F03734 Eucalyptus grandis
Eucgr.F04385 Eucalyptus grandis
Eucgr.G00561 Eucalyptus grandis
Eucgr.H02848 Eucalyptus grandis
FAN04G0083 Fragaria x ananassa
FAN08G2760 Fragaria x ananassa
FAN13G0570 Fragaria x ananassa
FvH4_5g38440 Fragaria vesca
Glyma.04G254402 Glycine max
Glyma.06G107700 Glycine max
Glyma.08G127100 Glycine max
Glyma.08G187700 Glycine max
Glyma.12G170400 Glycine max
Glyma.13G085000 Glycine max
Glyma.14G166900 Glycine max
Gohir.A02G075200 Gossypium hirsutum
Gohir.A05G230900 Gossypium hirsutum
Gohir.A06G040100 Gossypium hirsutum
Gohir.A13G035600 Gossypium hirsutum
Gohir.D02G082300 Gossypium hirsutum
Gohir.D05G233400 Gossypium hirsutum
Gohir.D06G041100 Gossypium hirsutum
Gohir.D09G075800 Gossypium hirsutum
Gohir.D13G033900 Gossypium hirsutum
Gorai.005G092200 Gossypium raimondii
Gorai.006G091000 Gossypium raimondii
Gorai.009G241500 Gossypium raimondii
Gorai.010G045900 Gossypium raimondii
Gorai.013G038300 Gossypium raimondii
GSVIVG01008955001 Vitis vinifera
GSVIVG01022844001 Vitis vinifera
HanXRQChr03g0065211 Helianthus annuus
HanXRQChr09g0249201 Helianthus annuus
HanXRQChr10g0298101 Helianthus annuus
HanXRQChr16g0511971 Helianthus annuus
Haze_00541 Corylus avellana
Haze_01741 Corylus avellana
Hma1.2p1_0251F.1_g102660 Hydrangea macrophylla
Hma1.2p1_1197F.1_g266120 Hydrangea macrophylla
HPP92_002007 Vanilla planifolia
HPP92_016109 Vanilla planifolia
Hund16814 Selenicereus undatus
Hund27066 Selenicereus undatus
Lalb_Chr08g0241751 Lupinus albus
Lalb_Chr10g0102041 Lupinus albus
Lalb_Chr11g0065621 Lupinus albus
Lalb_Chr15g0090671 Lupinus albus
Lalb_Chr20g0123561 Lupinus albus
Lj1g0000832 Lotus japonicus
Lj1g0003145 Lotus japonicus
Lj4A520T17 Lonicera japonica
Lj6g0006413 Lotus japonicus
Lj7A306T34 Lonicera japonica
Lj9A304T85 Lonicera japonica
Lsat_1_v5_gn_7_78920 Lactuca sativa
Lsat_1_v5_gn_9_121101 Lactuca sativa
Manes.02G157800 Manihot esculenta
Manes.10G122100 Manihot esculenta
Manes.18G072000 Manihot esculenta
Mapoly0005s0250 Marchantia polymorpha
MBI09_g08093_MAGBIO Magnolia biondii
MD04G1133000 Malus domestica
MD08G1173600 Malus domestica
MD12G1145700 Malus domestica
MD15G1360100 Malus domestica
Medtr2g006850 Medicago truncatula
Medtr3g073480 Medicago truncatula
Medtr5g060880 Medicago truncatula
Medtr5g460870 Medicago truncatula
Medtr8g088750 Medicago truncatula
MELO3C011375.2 Cucumis melo
MELO3C019452.2 Cucumis melo
Migut.C01201 Erythranthe guttata
Migut.N01047 Erythranthe guttata
Migut.N03334 Erythranthe guttata
MSTRG.16511 Avicennia marina
MSTRG.22436 Avicennia marina
MSTRG.24136 Avicennia marina
Nitab4.5_0000051g0290 Nicotiana tabacum
Nitab4.5_0000695g0170 Nicotiana tabacum
Nitab4.5_0000816g0120 Nicotiana tabacum
Nitab4.5_0001744g0060 Nicotiana tabacum
Nn1g08511 Nelumbo nucifera
Nn5g27932 Nelumbo nucifera
Oeu000110.1 Olea europaea
Oeu004782.1 Olea europaea
Oeu017870.1 Olea europaea
Oeu030022.1 Olea europaea
Oeu049826.1 Olea europaea
Oeu054498.1 Olea europaea
Oeu061541.2 Olea europaea
Os01g0875000 Oryza sativa ssp. japonica
Os02g0552200 Oryza sativa ssp. japonica
Os08g0104800 Oryza sativa ssp. japonica
Peaxi162Scf00011g00061 Petunia axillaris
Peaxi162Scf00152g00144 Petunia axillaris
PGR042G2169 Punica granatum
PGR042G3159 Punica granatum
PGR044G1846 Punica granatum
PGSC0003DMG400006547 Solanum tuberosum
PGSC0003DMG400023770 Solanum tuberosum
Phvul.002G249400 Phaseolus vulgaris
Phvul.006G215900 Phaseolus vulgaris
Phvul.008G168900 Phaseolus vulgaris
Phvul.009G026475 Phaseolus vulgaris
Potri.001G211900 Populus trichocarpa
Potri.002G090300 Populus trichocarpa
Potri.003G018700 Populus trichocarpa
Potri.005G170700 Populus trichocarpa
Prupe.1G507700 Prunus persica
Prupe.1G572300 Prunus persica
Psat0s2104g0160 Pisum sativum
Psat1g222000 Pisum sativum
Psat5g135720 Pisum sativum
Psat7g062880 Pisum sativum
PSO017G4470 Papaver somniferum
PSO170G1813 Papaver somniferum
QL02p099348 Quercus lobata
QL12p035461 Quercus lobata
RcHm_v2.0_Chr7g0240481 Rosa chinensis
Rhsim11G0063900 Rhododendron simsii
Rhsim11G0127900 Rhododendron simsii
Sabra01G0163700 Salix brachista
Sabra02G0071100 Salix brachista
Sabra03G0010200 Salix brachista
Sabra05G0128400 Salix brachista
SalBow6G2194 Salvia bowleyana
SalBow6G7077 Salvia bowleyana
SalBow7G1908 Salvia bowleyana
Sc23g0000990 Simmondsia chinensis
Sed0004286 Sechium edule
Sed0006077 Sechium edule
Sed0011760 Sechium edule
Sed0021028 Sechium edule
SEGI_01544 Sequoiadendron giganteum
SEGI_40655 Sequoiadendron giganteum
SGA_v2.0_scaffold1673G54006 Striga asiatica
SGA_v2.0_scaffold25G11083 Striga asiatica
SGA_v2.0_scaffold28G12053 Striga asiatica
SGA_v2.0_scaffold338G49211 Striga asiatica
SGA_v2.0_scaffold92G28185 Striga asiatica
SGA_v2.0_scaffold92G28188 Striga asiatica
SGA_v2.0_scaffold92G28190 Striga asiatica
SGA_v2.0_scaffold92G28193 Striga asiatica
Solyc01g104010.2 Solanum lycopersicum
Solyc11g013330.3 Solanum lycopersicum
Sopen01g046410 Solanum pennellii
Sopen11g008340 Solanum pennellii
Sp1g19540 Schrenkiella parvula
Sp5g33020 Schrenkiella parvula
TAR293G0004 Trochodendron aralioides
TAR376G0702 Trochodendron aralioides
TAR381G1288 Trochodendron aralioides
TAR624G0925 Trochodendron aralioides
TAR628G0220 Trochodendron aralioides
THA.LOC104800173 Tarenaya hassleriana
THA.LOC104810096 Tarenaya hassleriana
THA.LOC104813135 Tarenaya hassleriana
THA.LOC104813637 Tarenaya hassleriana
Thecc.02G088800 Theobroma cacao
Thecc.08G115500 Theobroma cacao
Thhalv10010029m.g Eutrema salsugineum
Thhalv10018874m.g Eutrema salsugineum
TPR.G2145 Trifolium pratense
TPR.G23095 Trifolium pratense
TPR.G30422 Trifolium pratense
TPR.G32958 Trifolium pratense
TWI12G1261 Tripterygium wilfordii
TWI23G0611 Tripterygium wilfordii
TWI36G0880 Tripterygium wilfordii
TWI56G1379 Tripterygium wilfordii
TWI59G0213 Tripterygium wilfordii
unitig_0.g912 Utricularia gibba
unitig_22.g6115 Utricularia gibba
unitig_744.g24554 Utricularia gibba
vmacro00783 Vaccinium macrocarpon
vmacro01751 Vaccinium macrocarpon
vmacro12524 Vaccinium macrocarpon
VMungo0251G2838 Vigna mungo
VMungo0540G0238 Vigna mungo
VMungo1309G0704 Vigna mungo
Zm00001eb146160 Zea mays
Zm00001eb243560 Zea mays
Zm00001eb260180 Zea mays
Zm00001eb366460 Zea mays

User provided reference genes

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