Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p11170 Brassica napus
A03p11220 Brassica napus
A10p17550 Brassica napus
Aa31LG1G12400 Aethionema arabicum
Aa31LG4G12680 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis
Actinidia03711 Actinidia chinensis
Actinidia20438 Actinidia chinensis
Actinidia21172 Actinidia chinensis
Ah.01g024490 Amaranthus hybridus
Ah.13g070120 Amaranthus hybridus
AL8G36950 Arabidopsis lyrata
AL8G36960 Arabidopsis lyrata
Aqoxy2G01471 Aquilegia oxysepala
Aqoxy5G00056 Aquilegia oxysepala
Aqoxy5G03165 Aquilegia oxysepala
Aqoxy6G01314 Aquilegia oxysepala
Aqoxy6G01924 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea
AT5G60335 Arabidopsis thaliana
AT5G60340 Arabidopsis thaliana
ATR0564G250 Amborella trichopoda
ATR0680G185 Amborella trichopoda
Atru.chr3.3690 Acer truncatum
Atru.chr3.3691 Acer truncatum
AUR62019559 Chenopodium quinoa
AUR62027574 Chenopodium quinoa
AUR62035785 Chenopodium quinoa
AUR62037871 Chenopodium quinoa
BcaB01g04653 Brassica carinata
BcaB01g04654 Brassica carinata
BcaB08g36333 Brassica carinata
BcaB08g36334 Brassica carinata
BcaC02g12517 Brassica carinata
BcaC04g19693 Brassica carinata
BcaC04g19694 Brassica carinata
BcaC08g46529 Brassica carinata
BolC3t13754H Brassica oleracea
BolC4t26562H Brassica oleracea
BolC9t58170H Brassica oleracea
BraA03t10433Z Brassica rapa
BraA03t10435Z Brassica rapa
BraA10t43836Z Brassica rapa
C03p12900 Brassica napus
C09p52960 Brassica napus
CAN.G1001.14 Capsicum annuum
CAN.G1001.18 Capsicum annuum
CAN.G1839.8 Capsicum annuum
CAN.G2109.1 Capsicum annuum
CAN.G352.38 Capsicum annuum
CAN.G553.11 Capsicum annuum
CAN.G6400.1 Capsicum annuum
CANSAT54G0974 Cannabis sativa
CANSAT54G1052 Cannabis sativa
CARHR181070 Cardamine hirsuta
CARHR274000 Cardamine hirsuta
CARHR274010 Cardamine hirsuta
Carub.0003s2777 Capsella rubella
Carub.0008s2104 Capsella rubella
Ca_01433_v3 Cicer arietinum L.
Ca_06160_v3 Cicer arietinum L.
Ca_11594_v3 Cicer arietinum L.
CBR_g17117 Chara braunii
CBR_g24285 Chara braunii
Cc01_g10710 Coffea canephora
Cc04_g16270 Coffea canephora
CDE02G0876 Ceratophyllum demersum
CDE06G2731 Ceratophyllum demersum
Cfa010014 Carpinus fangiana
Cfa024491 Carpinus fangiana
Ciclev10029381m.g Citrus clementina
Ciclev10029934m.g Citrus clementina
CiPaw.13G107000 Carya illinoinensis
CiPaw.13G107100 Carya illinoinensis
ClCG02G020940 Citrullus lanatus
ClCG02G020950 Citrullus lanatus
COL.COLO4_15624 Corchorus olitorius
COL.COLO4_25247 Corchorus olitorius
COL.COLO4_32908 Corchorus olitorius
Cpa.g.sc139.69 Carica papaya
Cpa.g.sc8.318 Carica papaya
Cre02.g081550 Chlamydomonas reinhardtii
Cre12.g560100 Chlamydomonas reinhardtii
CsaV3_6G021630 Cucumis sativus L.
CsaV3_6G021640 Cucumis sativus L.
CSS0025233 Camellia sinensis var. sinensis
CSS0035547 Camellia sinensis var. sinensis
DCAR_006043 Daucus carota
DCAR_006045 Daucus carota
Dinv24670 Davidia involucrata
Dinv29347 Davidia involucrata
Dinv32788 Davidia involucrata
Duzib138G1011 Durio zibethinus
Duzib170G1173 Durio zibethinus
Duzib211G0283 Durio zibethinus
Duzib211G0640 Durio zibethinus
ECA233G1138 Erigeron canadensis
ECA248G1487 Erigeron canadensis
EL10Ac5g12738 Beta vulgaris
EL10Ac8g19852 Beta vulgaris
Eucgr.B02468 Eucalyptus grandis
Eucgr.J00952 Eucalyptus grandis
FAN04G1346 Fragaria x ananassa
FAN08G2817 Fragaria x ananassa
FAN13G2429 Fragaria x ananassa
FAN16G1578 Fragaria x ananassa
FAN18G2638 Fragaria x ananassa
FAN21G3525 Fragaria x ananassa
FAN25G2109 Fragaria x ananassa
FvH4_5g29720 Fragaria vesca
Glyma.02G076000 Glycine max
Glyma.02G275000 Glycine max
Glyma.10G187200 Glycine max
Glyma.14G041000 Glycine max
Glyma.16G158000 Glycine max
Gohir.A07G116300 Gossypium hirsutum
Gohir.A08G047300 Gossypium hirsutum
Gohir.D07G120700 Gossypium hirsutum
Gohir.D08G057700 Gossypium hirsutum
Gorai.001G129900 Gossypium raimondii
Gorai.004G058900 Gossypium raimondii
GSVIVG01025134001 Vitis vinifera
GSVIVG01025135001 Vitis vinifera
HanXRQChr01g0019131 Helianthus annuus
HanXRQChr13g0401511 Helianthus annuus
Haze_23372 Corylus avellana
Haze_23913 Corylus avellana
Haze_23915 Corylus avellana
Haze_26704 Corylus avellana
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla
HPP92_005089 Vanilla planifolia
HPP92_005091 Vanilla planifolia
HPP92_005092 Vanilla planifolia
Hund27375 Selenicereus undatus
Hund28200 Selenicereus undatus
Hund28212 Selenicereus undatus
Lalb_Chr10g0105941 Lupinus albus
Lalb_Chr25g0283021 Lupinus albus
Lj1g0007529 Lotus japonicus
Lj2A1017T34 Lonicera japonica
Lj2A891T18 Lonicera japonica
LjContig00564g0008442 Lotus japonicus
LjContig00564g0025850 Lotus japonicus
Lsat_1_v5_gn_1_63680 Lactuca sativa
Lsat_1_v5_gn_6_26220 Lactuca sativa
Manes.04G024900 Manihot esculenta
Manes.11G141200 Manihot esculenta
Mapoly0012s0053 Marchantia polymorpha
Mapoly0013s0067 Marchantia polymorpha
MBI04_g27072_MAGBIO Magnolia biondii
MBI18_g31602_MAGBIO Magnolia biondii
MCO01G137 Micromonas commoda
MCO16G180 Micromonas commoda
MD10G1078500 Malus domestica
MD11G1129900 Malus domestica
Medtr5g087910 Medicago truncatula
Medtr5g087960 Medicago truncatula
MELO3C025746.2 Cucumis melo
MELO3C025747.2 Cucumis melo
Migut.D02183 Erythranthe guttata
Migut.N02582 Erythranthe guttata
MSTRG.17782 Avicennia marina
MSTRG.21143 Avicennia marina
Nitab4.5_0000106g0060 Nicotiana tabacum
Nitab4.5_0000106g0340 Nicotiana tabacum
Nitab4.5_0000511g0130 Nicotiana tabacum
Nitab4.5_0002129g0060 Nicotiana tabacum
Nn1g08940 Nelumbo nucifera
Nn5g28456 Nelumbo nucifera
Oeu005909.2 Olea europaea
Oeu009377.1 Olea europaea
Oeu037230.1 Olea europaea
Oeu049264.1 Olea europaea
Oeu049265.1 Olea europaea
Os07g0412400 Oryza sativa ssp. japonica
Peaxi162Scf00029g01714 Petunia axillaris
Peaxi162Scf00101g00114 Petunia axillaris
Peaxi162Scf00101g01011 Petunia axillaris
Peaxi162Scf00389g00950 Petunia axillaris
PGR102G0399 Punica granatum
PGR119G1746 Punica granatum
PGSC0003DMG400007496 Solanum tuberosum
PGSC0003DMG400008253 Solanum tuberosum
PGSC0003DMG400012002 Solanum tuberosum
PGSC0003DMG400027404 Solanum tuberosum
PGSC0003DMG400035128 Solanum tuberosum
PGSC0003DMG400039134 Solanum tuberosum
Phvul.004G086200 Phaseolus vulgaris
Phvul.008G171900 Phaseolus vulgaris
Phvul.008G172000 Phaseolus vulgaris
Phvul.008G206400 Phaseolus vulgaris
Potri.006G133800 Populus trichocarpa
Potri.006G228500 Populus trichocarpa
Potri.012G109400 Populus trichocarpa
Pp3c13_9300 Physcomitrium patens
Pp3c27_1710 Physcomitrium patens
PRCOL_00000283 Prasinoderma coloniale
PRCOL_00002156 Prasinoderma coloniale
Prupe.1G205700 Prunus persica
Prupe.6G094800 Prunus persica
Prupe.8G100300 Prunus persica
Psat2g021880 Pisum sativum
Psat2g022480 Pisum sativum
Psat2g022600 Pisum sativum
PSO339G1519 Papaver somniferum
PSO339G2915 Papaver somniferum
PSO541G3116 Papaver somniferum
PSO675G4527 Papaver somniferum
PSO801G0184 Papaver somniferum
QL01p037215 Quercus lobata
QL01p037218 Quercus lobata
QL08p054546 Quercus lobata
RcHm_v2.0_Chr5g0060661 Rosa chinensis
RcHm_v2.0_Chr7g0223211 Rosa chinensis
Rhsim01G0213200 Rhododendron simsii
Rhsim01G0213400 Rhododendron simsii
Rhsim01G0220200 Rhododendron simsii
Rhsim08G0250900 Rhododendron simsii
Sabra03G0090700 Salix brachista
Sabra06G0105100 Salix brachista
SalBow3G4510 Salvia bowleyana
SalBow7G0817 Salvia bowleyana
Sc06g0010580 Simmondsia chinensis
Sc15g0001550 Simmondsia chinensis
Sed0027804 Sechium edule
SEGI_36576 Sequoiadendron giganteum
SEGI_39229 Sequoiadendron giganteum
SGA_v2.0_scaffold25G11093 Striga asiatica
SGA_v2.0_scaffold61G21167 Striga asiatica
SHI24546 Sapria himalayana
SHI24547 Sapria himalayana
SHI33804 Sapria himalayana
SMO356G0194 Selaginella moellendorffii
SMO367G1131 Selaginella moellendorffii
Solyc06g075000.3 Solanum lycopersicum
Solyc06g075310.4 Solanum lycopersicum
Solyc11g072410.2 Solanum lycopersicum
Sopen06g031430 Solanum pennellii
Sopen06g031710 Solanum pennellii
Sopen11g030060 Solanum pennellii
Sp6g21940 Schrenkiella parvula
Sp6g21950 Schrenkiella parvula
TAR369G1020 Trochodendron aralioides
TAR623G1637 Trochodendron aralioides
TAR633G0359 Trochodendron aralioides
TAR636G2038 Trochodendron aralioides
TAR636G3373 Trochodendron aralioides
THA.LOC104799485 Tarenaya hassleriana
THA.LOC104814839 Tarenaya hassleriana
THA.LOC104814842 Tarenaya hassleriana
Thecc.01G220900 Theobroma cacao
Thecc.09G260200 Theobroma cacao
Thhalv10014819m.g Eutrema salsugineum
Thhalv10014838m.g Eutrema salsugineum
TPR.G11323 Trifolium pratense
TPR.G11328 Trifolium pratense
TPR.G11332 Trifolium pratense
TPR.G1260 Trifolium pratense
TWI31G0524 Tripterygium wilfordii
TWI75G1733 Tripterygium wilfordii
unitig_736.g22419 Utricularia gibba
vmacro14073 Vaccinium macrocarpon
vmacro14074 Vaccinium macrocarpon
vmacro14413 Vaccinium macrocarpon
vmacro14463 Vaccinium macrocarpon
VMungo0245G0001 Vigna mungo
VMungo0647G2488 Vigna mungo
VMungo1080G0265 Vigna mungo
Zm00001eb088630 Zea mays
Zm00001eb211510 Zea mays
Zm00001eb305840 Zea mays

User provided reference genes

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