Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p05620 Brassica napus
A06p27960 Brassica napus
A09p65790 Brassica napus
Aa31csc22G220 Aethionema arabicum
Aa31LG4G17350 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1794 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1459 Anthoceros agrestis
Actinidia08899 Actinidia chinensis
Actinidia18319 Actinidia chinensis
Actinidia19553 Actinidia chinensis
Actinidia36834 Actinidia chinensis
Actinidia37720 Actinidia chinensis
Ah.07g203590 Amaranthus hybridus
AL1G19100 Arabidopsis lyrata
AL5G28330 Arabidopsis lyrata
Aqoxy2G01216 Aquilegia oxysepala
Aqoxy2G01569 Aquilegia oxysepala
Aqoxy3G01547 Aquilegia oxysepala
Aqoxy3G01826 Aquilegia oxysepala
Aqoxy3G01827 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.E7NIDV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FZ4IBG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GQJ8ZK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q5UBLE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U25A6K Arachis hypogaea
AT1G08660 Arabidopsis thaliana
AT3G48820 Arabidopsis thaliana
ATR0559G248 Amborella trichopoda
ATR0691G177 Amborella trichopoda
ATR0762G023 Amborella trichopoda
ATR1145G070 Amborella trichopoda
Atru.chr6.1894 Acer truncatum
Atru.chr6.2656 Acer truncatum
AUR62017418 Chenopodium quinoa
AUR62017419 Chenopodium quinoa
AUR62029524 Chenopodium quinoa
AUR62034783 Chenopodium quinoa
AUR62037831 Chenopodium quinoa
AUR62044407 Chenopodium quinoa
BcaB02g09567 Brassica carinata
BcaB05g22984 Brassica carinata
BcaB07g34107 Brassica carinata
BcaC01g02378 Brassica carinata
BcaC05g24793 Brassica carinata
BcaC07g41931 Brassica carinata
BcaC09g49907 Brassica carinata
BolC1t03078H Brassica oleracea
BolC3t18851H Brassica oleracea
BolC5t29436H Brassica oleracea
BolC8t52517H Brassica oleracea
BraA06t23771Z Brassica rapa
BraA06t25736Z Brassica rapa
BraA09t41923Z Brassica rapa
C01p31420 Brassica napus
C03p65930 Brassica napus
C05p06770 Brassica napus
C08p49890 Brassica napus
CAN.G473.158 Capsicum annuum
CAN.G637.55 Capsicum annuum
CANSAT64G0517 Cannabis sativa
CANSAT80G1361 Cannabis sativa
CARHR008590 Cardamine hirsuta
CARHR157640 Cardamine hirsuta
Carub.0001s0802 Capsella rubella
Carub.0005s1499 Capsella rubella
Ca_08137_v3 Cicer arietinum L.
Ca_17578_v3 Cicer arietinum L.
Cc04_g09440 Coffea canephora
Cc07_g01240 Coffea canephora
CDE02G1245 Ceratophyllum demersum
CDE02G1792 Ceratophyllum demersum
CDE02G2081 Ceratophyllum demersum
CDE09G0993 Ceratophyllum demersum
Cfa018727 Carpinus fangiana
Cfa018921 Carpinus fangiana
Ciclev10016449m.g Citrus clementina
Ciclev10031575m.g Citrus clementina
CiPaw.03G002400 Carya illinoinensis
CiPaw.03G154500 Carya illinoinensis
CiPaw.11G001900 Carya illinoinensis
ClCG01G009990 Citrullus lanatus
ClCG05G012650 Citrullus lanatus
COL.COLO4_07851 Corchorus olitorius
COL.COLO4_16695 Corchorus olitorius
COL.COLO4_25343 Corchorus olitorius
COL.COLO4_33769 Corchorus olitorius
Cpa.g.sc4.113 Carica papaya
Cpa.g.sc70.73 Carica papaya
CsaV3_1G018440 Cucumis sativus L.
CsaV3_3G027760 Cucumis sativus L.
CSS0001739 Camellia sinensis var. sinensis
CSS0003614 Camellia sinensis var. sinensis
CSS0010877 Camellia sinensis var. sinensis
CSS0018812 Camellia sinensis var. sinensis
CSS0042591 Camellia sinensis var. sinensis
DCAR_002972 Daucus carota
DCAR_016356 Daucus carota
DCAR_021414 Daucus carota
Dinv11218 Davidia involucrata
Dinv23201 Davidia involucrata
Dinv33281 Davidia involucrata
Duzib084G1062 Durio zibethinus
Duzib205G1373 Durio zibethinus
Duzib248G0211 Durio zibethinus
Duzib251G0367 Durio zibethinus
ECA238G3378 Erigeron canadensis
ECA246G3437 Erigeron canadensis
EL10Ac5g11330 Beta vulgaris
EL10Ac6g13398 Beta vulgaris
Eucgr.F04117 Eucalyptus grandis
Eucgr.G01933 Eucalyptus grandis
Eucgr.I01604 Eucalyptus grandis
FAN02G0578 Fragaria x ananassa
FAN04G1768 Fragaria x ananassa
FAN08G2766 Fragaria x ananassa
FAN09G1123 Fragaria x ananassa
FAN13G3128 Fragaria x ananassa
FAN14G1313 Fragaria x ananassa
FAN18G1315 Fragaria x ananassa
FvH4_5g09130 Fragaria vesca
FvH4_6g54270 Fragaria vesca
Glyma.05G243500 Glycine max
Glyma.08G051300 Glycine max
Glyma.16G048900 Glycine max
Glyma.19G102500 Glycine max
Gohir.A03G097300 Gossypium hirsutum
Gohir.A12G193000 Gossypium hirsutum
Gohir.D02G116500 Gossypium hirsutum
Gohir.D12G195100 Gossypium hirsutum
Gorai.005G137400 Gossypium raimondii
Gorai.008G209800 Gossypium raimondii
GSVIVG01008625001 Vitis vinifera
GSVIVG01020098001 Vitis vinifera
GSVIVG01032992001 Vitis vinifera
GSVIVG01034546001 Vitis vinifera
HanXRQChr05g0152941 Helianthus annuus
HanXRQChr14g0451401 Helianthus annuus
Haze_07304 Corylus avellana
Haze_14946 Corylus avellana
Hma1.2p1_0033F.1_g021110 Hydrangea macrophylla
Hma1.2p1_0111F.1_g053740 Hydrangea macrophylla
Hma1.2p1_0502F.1_g167893 Hydrangea macrophylla
Hma1.2p1_0594F.1_g185840 Hydrangea macrophylla
Hma1.2p1_1313F.1_g274980 Hydrangea macrophylla
Hma1.2p1_3690F.1_g337250 Hydrangea macrophylla
HPP92_009425 Vanilla planifolia
HPP92_022382 Vanilla planifolia
Hund02485 Selenicereus undatus
Hund02486 Selenicereus undatus
Hund04202 Selenicereus undatus
Hund10069 Selenicereus undatus
Lalb_Chr07g0183721 Lupinus albus
Lalb_Chr13g0297061 Lupinus albus
Lalb_Chr14g0362141 Lupinus albus
Lalb_Chr24g0402401 Lupinus albus
Lj1g0004992 Lotus japonicus
Lj4g0008421 Lotus japonicus
Lj5C90T2 Lonicera japonica
Lj7C616T14 Lonicera japonica
Lsat_1_v5_gn_2_94940 Lactuca sativa
Lsat_1_v5_gn_5_10741 Lactuca sativa
Manes.04G092900 Manihot esculenta
Manes.14G046400 Manihot esculenta
MBI11_g08160_MAGBIO Magnolia biondii
MD06G1133300 Malus domestica
MD09G1003400 Malus domestica
MD14G1149700 Malus domestica
MD17G1007200 Malus domestica
Medtr7g084010 Medicago truncatula
Medtr8g099840 Medicago truncatula
MELO3C014814.2 Cucumis melo
MELO3C021701.2 Cucumis melo
Migut.B00937 Erythranthe guttata
Migut.D01226 Erythranthe guttata
Migut.F00014 Erythranthe guttata
MSTRG.22882 Avicennia marina
Nitab4.5_0000519g0270 Nicotiana tabacum
Nitab4.5_0002172g0130 Nicotiana tabacum
Nitab4.5_0005207g0020 Nicotiana tabacum
Nitab4.5_0007858g0010 Nicotiana tabacum
Nn4g22145 Nelumbo nucifera
Nn4g22183 Nelumbo nucifera
Oeu003418.1 Olea europaea
Oeu017523.1 Olea europaea
Oeu019024.1 Olea europaea
Oeu058116.1 Olea europaea
Os02g0118400 Oryza sativa ssp. japonica
Os02g0119000 Oryza sativa ssp. japonica
Os11g0572400 Oryza sativa ssp. japonica
Peaxi162Scf00171g01121 Petunia axillaris
Peaxi162Scf00420g00850 Petunia axillaris
PGR119G0018 Punica granatum
PGR142G1513 Punica granatum
PGSC0003DMG400020193 Solanum tuberosum
PGSC0003DMG402019860 Solanum tuberosum
Phvul.001G084900 Phaseolus vulgaris
Phvul.002G327200 Phaseolus vulgaris
Potri.014G145400 Populus trichocarpa
Potri.015G104100 Populus trichocarpa
Pp3c14_15550 Physcomitrium patens
Pp3c7_26950 Physcomitrium patens
Prupe.3G313100 Prunus persica
Prupe.5G144500 Prunus persica
Psat3g093520 Pisum sativum
Psat7g038520 Pisum sativum
PSO017G0289 Papaver somniferum
PSO017G2457 Papaver somniferum
PSO017G2890 Papaver somniferum
PSO063G4485 Papaver somniferum
PSO170G2270 Papaver somniferum
PSO170G5695 Papaver somniferum
QL02p081543 Quercus lobata
QL09p026347 Quercus lobata
QL10p001052 Quercus lobata
RcHm_v2.0_Chr2g0176451 Rosa chinensis
RcHm_v2.0_Chr3g0492771 Rosa chinensis
RcHm_v2.0_Chr7g0189061 Rosa chinensis
Rhsim08G0039500 Rhododendron simsii
Rhsim12G0179900 Rhododendron simsii
Sabra12G0077200 Salix brachista
Sabra15G0123900 Salix brachista
SalBow4G0295 Salvia bowleyana
SalBow4G2027 Salvia bowleyana
Sc10g0006440 Simmondsia chinensis
Sc22g0003520 Simmondsia chinensis
Sed0003557 Sechium edule
Sed0004938 Sechium edule
Sed0012561 Sechium edule
Sed0014171 Sechium edule
SEGI_10029 Sequoiadendron giganteum
SEGI_22844 Sequoiadendron giganteum
SGA_v2.0_scaffold42G15915 Striga asiatica
SGA_v2.0_scaffold44G16953 Striga asiatica
SGA_v2.0_scaffold74G24699 Striga asiatica
SHI11386 Sapria himalayana
SHI14220 Sapria himalayana
SMO353G0162 Selaginella moellendorffii
SMO353G0219 Selaginella moellendorffii
SMO353G0265 Selaginella moellendorffii
SMO358G0205 Selaginella moellendorffii
SMO364G0255 Selaginella moellendorffii
SMO364G0349 Selaginella moellendorffii
SMO364G0384 Selaginella moellendorffii
SMO364G0627 Selaginella moellendorffii
SMO364G0692 Selaginella moellendorffii
Solyc02g094500.3 Solanum lycopersicum
Solyc03g097780.3 Solanum lycopersicum
Sopen02g039180 Solanum pennellii
Sopen03g028530 Solanum pennellii
Sp1g07320 Schrenkiella parvula
Sp5g13210 Schrenkiella parvula
TAR371G0334 Trochodendron aralioides
TAR622G1255 Trochodendron aralioides
TAR629G1529 Trochodendron aralioides
TAR629G3032 Trochodendron aralioides
THA.LOC104821308 Tarenaya hassleriana
THA.LOC104821533 Tarenaya hassleriana
Thecc.02G363500 Theobroma cacao
Thecc.03G137900 Theobroma cacao
Thhalv10007525m.g Eutrema salsugineum
Thhalv10010382m.g Eutrema salsugineum
TPR.G10342 Trifolium pratense
TPR.G12748 Trifolium pratense
TPR.G13760 Trifolium pratense
TWI23G0491 Tripterygium wilfordii
TWI32G0134 Tripterygium wilfordii
unitig_0.g1641 Utricularia gibba
unitig_27.g25084 Utricularia gibba
vmacro16746 Vaccinium macrocarpon
vmacro18377 Vaccinium macrocarpon
VMungo0251G1339 Vigna mungo
VMungo0647G1392 Vigna mungo
VMungo0647G1682 Vigna mungo
VMungo1383G3446 Vigna mungo
Zm00001eb013310 Zea mays
Zm00001eb023200 Zea mays
Zm00001eb144870 Zea mays
Zm00001eb200140 Zea mays
Zm00001eb230130 Zea mays
Zm00001eb284670 Zea mays

User provided reference genes

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