Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p04520 Brassica napus
A03p62330 Brassica napus
Aa31LG2G17080 Aethionema arabicum
Actinidia00360 Actinidia chinensis
Actinidia04390 Actinidia chinensis
Actinidia10209 Actinidia chinensis
Actinidia19303 Actinidia chinensis
Actinidia27995 Actinidia chinensis
Actinidia34355 Actinidia chinensis
Ah.01g007050 Amaranthus hybridus
Ah.11g039400 Amaranthus hybridus
AL7G17660 Arabidopsis lyrata
Aqoxy6G02560 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Z4Y0D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2U5QAW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3RQF03 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A11EGF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EC2A8B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QB6IYV Arachis hypogaea
AT4G33800 Arabidopsis thaliana
ATR0705G034 Amborella trichopoda
ATR0739G138 Amborella trichopoda
Atru.chr13.848 Acer truncatum
Atru.chr5.2325 Acer truncatum
AUR62022466 Chenopodium quinoa
AUR62041661 Chenopodium quinoa
BcaC01g00964 Brassica carinata
BcaC09g52190 Brassica carinata
BcaNung04670 Brassica carinata
BolC1t00474H Brassica oleracea
BolC7t46433H Brassica oleracea
BraA01t00437Z Brassica rapa
C01p04900 Brassica napus
C07p59890 Brassica napus
CAN.G606.66 Capsicum annuum
CAN.G975.16 Capsicum annuum
CANSAT25G0992 Cannabis sativa
CANSAT25G1695 Cannabis sativa
CANSAT25G2021 Cannabis sativa
CARHR241890 Cardamine hirsuta
Carub.0007s0663 Capsella rubella
Ca_11030_v3 Cicer arietinum L.
Ca_13210_v3 Cicer arietinum L.
Ca_24361_v3 Cicer arietinum L.
Cc00_g17020 Coffea canephora
Cc02_g19990 Coffea canephora
Cc10_g05040 Coffea canephora
Cc10_g05050 Coffea canephora
Cfa004671 Carpinus fangiana
Ciclev10002703m.g Citrus clementina
Ciclev10029343m.g Citrus clementina
CiPaw.05G019200 Carya illinoinensis
CiPaw.06G164900 Carya illinoinensis
CiPaw.07G173700 Carya illinoinensis
CiPaw.08G050800 Carya illinoinensis
ClCG05G020680 Citrullus lanatus
ClCG08G016590 Citrullus lanatus
ClCG10G010090 Citrullus lanatus
COL.COLO4_28483 Corchorus olitorius
Cpa.g.sc106.37 Carica papaya
Cpa.g.sc142.41 Carica papaya
CsaV3_2G026020 Cucumis sativus L.
CsaV3_4G000130 Cucumis sativus L.
CsaV3_4G035130 Cucumis sativus L.
CSS0002290 Camellia sinensis var. sinensis
CSS0003834 Camellia sinensis var. sinensis
CSS0009619 Camellia sinensis var. sinensis
CSS0009753 Camellia sinensis var. sinensis
DCAR_001741 Daucus carota
DCAR_009875 Daucus carota
DCAR_012823 Daucus carota
DCAR_020053 Daucus carota
DCAR_029176 Daucus carota
Dinv15818 Davidia involucrata
Dinv39215 Davidia involucrata
Dinv42242 Davidia involucrata
Dinv44944 Davidia involucrata
Duzib041G0516 Durio zibethinus
Duzib052G0953 Durio zibethinus
Duzib093G1945 Durio zibethinus
Duzib132G0526 Durio zibethinus
ECA236G2487 Erigeron canadensis
ECA240G3574 Erigeron canadensis
ECA246G2811 Erigeron canadensis
EL10Ac1g02365 Beta vulgaris
EL10Ac9g22186 Beta vulgaris
Eucgr.F00090 Eucalyptus grandis
Eucgr.F02240 Eucalyptus grandis
Eucgr.I01046 Eucalyptus grandis
FAN15G1065 Fragaria x ananassa
FAN15G1641 Fragaria x ananassa
FAN20G0615 Fragaria x ananassa
FAN20G2155 Fragaria x ananassa
FAN24G0690 Fragaria x ananassa
FAN24G3376 Fragaria x ananassa
FAN27G2180 Fragaria x ananassa
FvH4_2g03590 Fragaria vesca
FvH4_2g32900 Fragaria vesca
Glyma.01G242100 Glycine max
Glyma.04G046600 Glycine max
Glyma.06G047300 Glycine max
Glyma.10G256100 Glycine max
Glyma.11G002100 Glycine max
Glyma.14G089039 Glycine max
Glyma.17G234000 Glycine max
Glyma.20G135500 Glycine max
Gohir.A02G080700 Gossypium hirsutum
Gohir.A03G181300 Gossypium hirsutum
Gohir.A05G210800 Gossypium hirsutum
Gohir.A06G024600 Gossypium hirsutum
Gohir.A12G019300 Gossypium hirsutum
Gohir.A13G047300 Gossypium hirsutum
Gohir.D02G088500 Gossypium hirsutum
Gohir.D02G203237 Gossypium hirsutum
Gohir.D05G214100 Gossypium hirsutum
Gohir.D06G021700 Gossypium hirsutum
Gohir.D12G019500 Gossypium hirsutum
Gohir.D13G044350 Gossypium hirsutum
Gorai.005G099200 Gossypium raimondii
Gorai.005G230200 Gossypium raimondii
Gorai.008G019800 Gossypium raimondii
Gorai.009G220800 Gossypium raimondii
Gorai.010G026300 Gossypium raimondii
Gorai.013G051000 Gossypium raimondii
GSVIVG01009322001 Vitis vinifera
GSVIVG01037808001 Vitis vinifera
HanXRQChr03g0065031 Helianthus annuus
HanXRQChr03g0073221 Helianthus annuus
Haze_10271 Corylus avellana
Haze_22419 Corylus avellana
Hma1.2p1_0394F.1_g143520 Hydrangea macrophylla
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla
HPP92_020402 Vanilla planifolia
Hund00424 Selenicereus undatus
Hund05293 Selenicereus undatus
Hund06511 Selenicereus undatus
Lalb_Chr02g0144931 Lupinus albus
Lalb_Chr06g0165021 Lupinus albus
Lalb_Chr11g0062941 Lupinus albus
Lalb_Chr21g0308011 Lupinus albus
Lalb_Chr22g0355701 Lupinus albus
Lj1g0008942 Lotus japonicus
Lj1g0009349 Lotus japonicus
Lj4C72T9 Lonicera japonica
Lj5g0012685 Lotus japonicus
Lj5g0023078 Lotus japonicus
Lj9A329T24 Lonicera japonica
Lj9A332T16 Lonicera japonica
Lsat_1_v5_gn_6_108580 Lactuca sativa
Lsat_1_v5_gn_7_84920 Lactuca sativa
Lsat_1_v5_gn_9_113180 Lactuca sativa
Manes.07G054200 Manihot esculenta
Manes.10G084600 Manihot esculenta
Manes.18G047500 Manihot esculenta
MBI16_g37753_MAGBIO Magnolia biondii
MBI16_g37755_MAGBIO Magnolia biondii
MD05G1102500 Malus domestica
MD08G1080400 Malus domestica
MD10G1108100 Malus domestica
MD15G1067500 Malus domestica
Medtr1g017890 Medicago truncatula
Medtr1g106080 Medicago truncatula
Medtr3g103260 Medicago truncatula
Medtr5g005230 Medicago truncatula
MELO3C010796.2 Cucumis melo
MELO3C016826.2 Cucumis melo
MELO3C018019.2 Cucumis melo
Migut.B00455 Erythranthe guttata
MSTRG.1024 Avicennia marina
MSTRG.16674 Avicennia marina
MSTRG.20224 Avicennia marina
MSTRG.22217 Avicennia marina
MSTRG.24380 Avicennia marina
Nitab4.5_0000497g0080 Nicotiana tabacum
Nitab4.5_0001185g0040 Nicotiana tabacum
Nitab4.5_0001458g0070 Nicotiana tabacum
Nitab4.5_0002040g0070 Nicotiana tabacum
Nitab4.5_0003725g0030 Nicotiana tabacum
Nitab4.5_0003953g0040 Nicotiana tabacum
Nitab4.5_0007781g0010 Nicotiana tabacum
Nn5g30629 Nelumbo nucifera
Nn6g34504 Nelumbo nucifera
Oeu020549.2 Olea europaea
Oeu036975.1 Olea europaea
Oeu037285.1 Olea europaea
Oeu048571.1 Olea europaea
Oeu053627.1 Olea europaea
Peaxi162Scf00003g00288 Petunia axillaris
Peaxi162Scf00016g03017 Petunia axillaris
Peaxi162Scf00081g00269 Petunia axillaris
Peaxi162Scf00160g00517 Petunia axillaris
PGR083G2271 Punica granatum
PGR142G4072 Punica granatum
PGSC0003DMG400010615 Solanum tuberosum
PGSC0003DMG400025836 Solanum tuberosum
PGSC0003DMG401011556 Solanum tuberosum
Phvul.001G028800 Phaseolus vulgaris
Phvul.002G051300 Phaseolus vulgaris
Phvul.007G046700 Phaseolus vulgaris
Phvul.009G072700 Phaseolus vulgaris
Potri.001G292100 Populus trichocarpa
Potri.002G117600 Populus trichocarpa
Potri.009G086600 Populus trichocarpa
Potri.014G015000 Populus trichocarpa
Prupe.1G421400 Prunus persica
Prupe.8G147000 Prunus persica
Psat0ss7070g0040 Pisum sativum
Psat4g227320 Pisum sativum
Psat6g017720 Pisum sativum
Psat6g214680 Pisum sativum
PSO017G0848 Papaver somniferum
PSO170G3219 Papaver somniferum
PSO541G5000 Papaver somniferum
PSO675G0250 Papaver somniferum
QL11p029982 Quercus lobata
QL12p038263 Quercus lobata
QL93p0154_0003 Quercus lobata
RcHm_v2.0_Chr6g0252561 Rosa chinensis
RcHm_v2.0_Chr6g0309821 Rosa chinensis
Rhsim05G0091500 Rhododendron simsii
Rhsim05G0092300 Rhododendron simsii
Rhsim06G0063100 Rhododendron simsii
RhsimUnG0041400 Rhododendron simsii
RhsimUnG0123400 Rhododendron simsii
Sabra02G0092100 Salix brachista
Sabra09G0066300 Salix brachista
Sabra14G0009000 Salix brachista
Sabra16G0182100 Salix brachista
SalBow2G3451 Salvia bowleyana
SalBow6G4199 Salvia bowleyana
SalBow7G1464 Salvia bowleyana
Sc02g0007970 Simmondsia chinensis
Sc08g0004360 Simmondsia chinensis
Sc15g0005620 Simmondsia chinensis
Sed0002993 Sechium edule
Sed0010289 Sechium edule
Sed0010950 Sechium edule
Sed0020406 Sechium edule
Sed0022600 Sechium edule
SGA_v2.0_scaffold225G43055 Striga asiatica
SGA_v2.0_scaffold238G43939 Striga asiatica
SGA_v2.0_scaffold238G43955 Striga asiatica
SGA_v2.0_scaffold28G11838 Striga asiatica
Solyc01g106910.4 Solanum lycopersicum
Solyc04g077690.3 Solanum lycopersicum
Solyc12g088300.2 Solanum lycopersicum
Sopen01g049190 Solanum pennellii
Sopen04g031330 Solanum pennellii
Sopen12g030300 Solanum pennellii
Sp7g31540 Schrenkiella parvula
TAR376G0005 Trochodendron aralioides
TAR381G0181 Trochodendron aralioides
TAR625G0272 Trochodendron aralioides
TAR628G0919 Trochodendron aralioides
TAR633G1602 Trochodendron aralioides
THA.LOC104807210 Tarenaya hassleriana
THA.LOC104824967 Tarenaya hassleriana
Thecc.02G118800 Theobroma cacao
Thecc.08G086800 Theobroma cacao
Thhalv10026460m.g Eutrema salsugineum
TPR.G13172 Trifolium pratense
TPR.G21149 Trifolium pratense
TPR.G33675 Trifolium pratense
TPR.G8322 Trifolium pratense
TWI12G0333 Tripterygium wilfordii
TWI12G0423 Tripterygium wilfordii
TWI14G1286 Tripterygium wilfordii
TWI56G0446 Tripterygium wilfordii
TWI59G0380 Tripterygium wilfordii
unitig_0.g1046 Utricularia gibba
unitig_21.g20307 Utricularia gibba
unitig_21.g20629 Utricularia gibba
unitig_578.g16152 Utricularia gibba
unitig_744.g24125 Utricularia gibba
unitig_8.g4872 Utricularia gibba
vmacro01953 Vaccinium macrocarpon
vmacro19537 Vaccinium macrocarpon
VMungo0647G1017 Vigna mungo
VMungo0720G0862 Vigna mungo
VMungo0795G0001 Vigna mungo
VMungo1215G2231 Vigna mungo

User provided reference genes

Program Settings