Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p03420 Brassica napus
A06p07580 Brassica napus
Aa31LG10G11410 Aethionema arabicum
Aa31LG1G4040 Aethionema arabicum
Aa31LG3G3730 Aethionema arabicum
Actinidia02666 Actinidia chinensis
Actinidia05488 Actinidia chinensis
Actinidia24548 Actinidia chinensis
Actinidia26144 Actinidia chinensis
Actinidia38201 Actinidia chinensis
Ah.06g182300 Amaranthus hybridus
AL1G21720 Arabidopsis lyrata
AL3G22310 Arabidopsis lyrata
AL5G32900 Arabidopsis lyrata
AL5G37960 Arabidopsis lyrata
Aqoxy1G00056 Aquilegia oxysepala
Aqoxy5G02341 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.H9P2CM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N3RN7X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U6R2AI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZU4KSC Arachis hypogaea
AT1G10790 Arabidopsis thaliana
AT3G10810 Arabidopsis thaliana
AT3G56590 Arabidopsis thaliana
ATR0193G027 Amborella trichopoda
ATR0782G221 Amborella trichopoda
Atru.chr1.1379 Acer truncatum
Atru.chr6.663 Acer truncatum
AUR62018415 Chenopodium quinoa
AUR62021028 Chenopodium quinoa
BcaB02g07647 Brassica carinata
BcaB02g08362 Brassica carinata
BcaB04g21173 Brassica carinata
BcaC02g09853 Brassica carinata
BcaC05g24953 Brassica carinata
BolC1t05351H Brassica oleracea
BolC4t25210H Brassica oleracea
BolC5t29658H Brassica oleracea
BraA01t04220Z Brassica rapa
BraA04t16096Z Brassica rapa
BraA06t23960Z Brassica rapa
C04p35900 Brassica napus
C05p09140 Brassica napus
CAN.G128.93 Capsicum annuum
CAN.G959.19 Capsicum annuum
CANSAT11G1433 Cannabis sativa
CANSAT64G2553 Cannabis sativa
CARHR011010 Cardamine hirsuta
CARHR085370 Cardamine hirsuta
CARHR166700 Cardamine hirsuta
Carub.0001s1034 Capsella rubella
Carub.0003s1004 Capsella rubella
Carub.0005s2333 Capsella rubella
Ca_00084_v3 Cicer arietinum L.
Ca_08697_v3 Cicer arietinum L.
Ca_25838_v3 Cicer arietinum L.
Ca_30709_v3 Cicer arietinum L.
Cc02_g22450 Coffea canephora
Cc06_g21340 Coffea canephora
CDE04G2086 Ceratophyllum demersum
CDE08G0448 Ceratophyllum demersum
CDE08G0562 Ceratophyllum demersum
CDE09G0252 Ceratophyllum demersum
Cfa005526 Carpinus fangiana
Cfa019950 Carpinus fangiana
Ciclev10000890m.g Citrus clementina
CiPaw.05G043900 Carya illinoinensis
CiPaw.06G147700 Carya illinoinensis
CiPaw.09G052000 Carya illinoinensis
CiPaw.10G043800 Carya illinoinensis
ClCG04G005900 Citrullus lanatus
ClCG05G009730 Citrullus lanatus
ClCG10G016280 Citrullus lanatus
COL.COLO4_17873 Corchorus olitorius
Cpa.g.sc113.64 Carica papaya
Cpa.g.sc92.61 Carica papaya
CsaV3_3G018880 Cucumis sativus L.
CsaV3_3G040070 Cucumis sativus L.
CSS0011739 Camellia sinensis var. sinensis
CSS0018998 Camellia sinensis var. sinensis
CSS0032428 Camellia sinensis var. sinensis
CSS0032726 Camellia sinensis var. sinensis
DCAR_013988 Daucus carota
Dinv03031 Davidia involucrata
Dinv07097 Davidia involucrata
Dinv19363 Davidia involucrata
Dinv24269 Davidia involucrata
Duzib052G1058 Durio zibethinus
Duzib128G0668 Durio zibethinus
Duzib132G0098 Durio zibethinus
Duzib248G0300 Durio zibethinus
ECA236G3523 Erigeron canadensis
ECA236G5149 Erigeron canadensis
ECA240G0296 Erigeron canadensis
EL10Ac3g07302 Beta vulgaris
Eucgr.G00603 Eucalyptus grandis
Eucgr.K01680 Eucalyptus grandis
FAN08G2284 Fragaria x ananassa
FAN13G0569 Fragaria x ananassa
FAN13G2045 Fragaria x ananassa
FAN18G2417 Fragaria x ananassa
FAN19G0267 Fragaria x ananassa
FAN23G2931 Fragaria x ananassa
FAN26G0777 Fragaria x ananassa
FAN28G2240 Fragaria x ananassa
FvH4_1g29240 Fragaria vesca
FvH4_5g29560 Fragaria vesca
Glyma.02G161900 Glycine max
Glyma.08G185100 Glycine max
Glyma.10G101600 Glycine max
Glyma.10G101800 Glycine max
Glyma.15G047600 Glycine max
Glyma.19G125700 Glycine max
Gohir.A03G211500 Gossypium hirsutum
Gohir.A04G127100 Gossypium hirsutum
Gohir.A11G305700 Gossypium hirsutum
Gohir.A12G032000 Gossypium hirsutum
Gohir.D02G233100 Gossypium hirsutum
Gohir.D04G171900 Gossypium hirsutum
Gohir.D11G321100 Gossypium hirsutum
Gohir.D12G040300 Gossypium hirsutum
Gorai.005G260900 Gossypium raimondii
Gorai.007G351300 Gossypium raimondii
Gorai.008G042000 Gossypium raimondii
Gorai.012G160900 Gossypium raimondii
GSVIVG01010657001 Vitis vinifera
GSVIVG01022968001 Vitis vinifera
GSVIVG01022969001 Vitis vinifera
GSVIVG01025813001 Vitis vinifera
HanXRQChr03g0071721 Helianthus annuus
HanXRQChr04g0125601 Helianthus annuus
HanXRQChr05g0142951 Helianthus annuus
HanXRQChr06g0177161 Helianthus annuus
HanXRQChr11g0333521 Helianthus annuus
Haze_01665 Corylus avellana
Haze_20289 Corylus avellana
Hma1.2p1_0217F.1_g092000 Hydrangea macrophylla
HPP92_000748 Vanilla planifolia
HPP92_001659 Vanilla planifolia
HPP92_002299 Vanilla planifolia
HPP92_026791 Vanilla planifolia
Hund24535 Selenicereus undatus
Lalb_Chr14g0365441 Lupinus albus
Lalb_Chr15g0090621 Lupinus albus
Lalb_Chr20g0123421 Lupinus albus
Lj1A1081T47 Lonicera japonica
Lj1g0007902 Lotus japonicus
Lj6g0011443 Lotus japonicus
Lj9A306G60 Lonicera japonica
Lsat_1_v5_gn_7_77720 Lactuca sativa
Lsat_1_v5_gn_8_83880 Lactuca sativa
Lsat_1_v5_gn_9_118361 Lactuca sativa
Manes.08G162300 Manihot esculenta
Manes.10G129700 Manihot esculenta
MBI03_g33024_MAGBIO Magnolia biondii
MBI19_g35285_MAGBIO Magnolia biondii
MD08G1228500 Malus domestica
MD08G1228600 Malus domestica
MD15G1422400 Malus domestica
MD15G1422500 Malus domestica
Medtr2g438510 Medicago truncatula
Medtr7g088720 Medicago truncatula
MELO3C009747.2 Cucumis melo
MELO3C019136.2 Cucumis melo
MELO3C019480.2 Cucumis melo
Migut.B00840 Erythranthe guttata
Migut.K00162 Erythranthe guttata
MSTRG.19774 Avicennia marina
MSTRG.26181 Avicennia marina
MSTRG.27842 Avicennia marina
Nitab4.5_0000062g0260 Nicotiana tabacum
Nitab4.5_0000123g0260 Nicotiana tabacum
Nitab4.5_0001270g0030 Nicotiana tabacum
Nitab4.5_0002102g0060 Nicotiana tabacum
Nitab4.5_0002245g0080 Nicotiana tabacum
Nitab4.5_0003225g0030 Nicotiana tabacum
Nn1g08734 Nelumbo nucifera
Nn2g14594 Nelumbo nucifera
Nn4g24658 Nelumbo nucifera
Nn5g28205 Nelumbo nucifera
Oeu000190.1 Olea europaea
Oeu025683.1 Olea europaea
Oeu057810.1 Olea europaea
Oeu060767.1 Olea europaea
Oeu060768.1 Olea europaea
Oeu064747.2 Olea europaea
Os01g0938600 Oryza sativa ssp. japonica
Os02g0768000 Oryza sativa ssp. japonica
Os05g0373500 Oryza sativa ssp. japonica
Os09g0454200 Oryza sativa ssp. japonica
Peaxi162Scf00003g05361 Petunia axillaris
Peaxi162Scf00011g00363 Petunia axillaris
Peaxi162Scf00152g01338 Petunia axillaris
Peaxi162Scf00601g00013 Petunia axillaris
PGR042G2993 Punica granatum
PGR142G2587 Punica granatum
PGSC0003DMG400007198 Solanum tuberosum
PGSC0003DMG400023790 Solanum tuberosum
PGSC0003DMG400028196 Solanum tuberosum
Phvul.001G117400 Phaseolus vulgaris
Phvul.006G213200 Phaseolus vulgaris
Phvul.007G243800 Phaseolus vulgaris
Potri.001G210600 Populus trichocarpa
Potri.006G031800 Populus trichocarpa
Potri.016G029100 Populus trichocarpa
Prupe.1G567800 Prunus persica
Prupe.7G019800 Prunus persica
Psat1g224360 Pisum sativum
Psat3g082200 Pisum sativum
PSO339G5171 Papaver somniferum
PSO384G0663 Papaver somniferum
QL07p013773 Quercus lobata
RcHm_v2.0_Chr3g0494681 Rosa chinensis
RcHm_v2.0_Chr3g0494691 Rosa chinensis
RcHm_v2.0_Chr7g0222521 Rosa chinensis
Rhsim04G0117900 Rhododendron simsii
Rhsim08G0117600 Rhododendron simsii
Sabra01G0162700 Salix brachista
Sabra06G0021200 Salix brachista
Sabra16G0033100 Salix brachista
SalBow1G8033 Salvia bowleyana
SalBow5G3472 Salvia bowleyana
SalBow6G1798 Salvia bowleyana
SalBow6G4929 Salvia bowleyana
SalBow6G6220 Salvia bowleyana
Sc13g0000850 Simmondsia chinensis
Sc19g0007920 Simmondsia chinensis
Sed0005077 Sechium edule
Sed0012500 Sechium edule
Sed0020418 Sechium edule
Sed0021719 Sechium edule
SEGI_10931 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00309 Striga asiatica
SGA_v2.0_scaffold66G22307 Striga asiatica
SGA_v2.0_scaffold69G23181 Striga asiatica
SHI24486 Sapria himalayana
SMO145G0110 Selaginella moellendorffii
Solyc01g104240.3 Solanum lycopersicum
Solyc10g078160.2 Solanum lycopersicum
Solyc10g081010.3 Solanum lycopersicum
Sopen01g046680 Solanum pennellii
Sopen10g028840 Solanum pennellii
Sopen10g031520 Solanum pennellii
Sp1g09490 Schrenkiella parvula
Sp3g09130 Schrenkiella parvula
Sp5g05970 Schrenkiella parvula
TAR376G0601 Trochodendron aralioides
TAR623G0837 Trochodendron aralioides
TAR623G1667 Trochodendron aralioides
TAR633G2682 Trochodendron aralioides
THA.LOC104803224 Tarenaya hassleriana
THA.LOC104816497 Tarenaya hassleriana
THA.LOC104823165 Tarenaya hassleriana
THA.LOC104824377 Tarenaya hassleriana
THA.LOC104826878 Tarenaya hassleriana
Thecc.02G039000 Theobroma cacao
Thecc.05G119200 Theobroma cacao
Thhalv10005913m.g Eutrema salsugineum
Thhalv10009702m.g Eutrema salsugineum
Thhalv10021942m.g Eutrema salsugineum
TPR.G2063 Trifolium pratense
TPR.G23188 Trifolium pratense
TWI14G1376 Tripterygium wilfordii
TWI23G0761 Tripterygium wilfordii
TWI53G0516 Tripterygium wilfordii
TWI74G0806 Tripterygium wilfordii
TWI77G0801 Tripterygium wilfordii
unitig_0.g597 Utricularia gibba
unitig_60.g25481 Utricularia gibba
vmacro08976 Vaccinium macrocarpon
vmacro17829 Vaccinium macrocarpon
vmacro17892 Vaccinium macrocarpon
vmacro19896 Vaccinium macrocarpon
VMungo0540G2183 Vigna mungo
VMungo0720G0313 Vigna mungo
VMungo1383G3648 Vigna mungo
Zm00001eb009040 Zea mays
Zm00001eb009050 Zea mays
Zm00001eb100440 Zea mays
Zm00001eb141710 Zea mays
Zm00001eb256100 Zea mays
Zm00001eb314750 Zea mays
Zm00001eb363280 Zea mays

User provided reference genes

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