Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19260 Brassica napus
A05p10250 Brassica napus
A09p33880 Brassica napus
Aa31LG2G13740 Aethionema arabicum
Aa31LG4G4590 Aethionema arabicum
Aa31LG9G15470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis
Actinidia03351 Actinidia chinensis
Actinidia07899 Actinidia chinensis
Actinidia14785 Actinidia chinensis
Ah.12g055410 Amaranthus hybridus
Ah.12g055420 Amaranthus hybridus
AL1G46410 Arabidopsis lyrata
AL4G31530 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G961TR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y11EX9 Arachis hypogaea
AT1G32260 Arabidopsis thaliana
AT1G74340 Arabidopsis thaliana
AT2G35480 Arabidopsis thaliana
ATR0564G363 Amborella trichopoda
ATR0829G180 Amborella trichopoda
Atru.chr6.1616 Acer truncatum
AUR62007343 Chenopodium quinoa
AUR62007344 Chenopodium quinoa
AUR62018655 Chenopodium quinoa
AUR62018656 Chenopodium quinoa
BcaB02g09426 Brassica carinata
BcaB05g24849 Brassica carinata
BcaB07g32907 Brassica carinata
BcaC01g02570 Brassica carinata
BcaC02g11653 Brassica carinata
BcaC05g25932 Brassica carinata
BcaC05g27267 Brassica carinata
BcaC08g46864 Brassica carinata
BolC2t09212H Brassica oleracea
BolC3t18589H Brassica oleracea
BolC4t22918H Brassica oleracea
BolC5t31898H Brassica oleracea
BolC6t39879H Brassica oleracea
BraA02t06971Z Brassica rapa
BraA05t19965Z Brassica rapa
BraA07t31559Z Brassica rapa
BraA09t38936Z Brassica rapa
C03p63360 Brassica napus
C04p12700 Brassica napus
C05p18840 Brassica napus
C05p31720 Brassica napus
CAN.G1298.37 Capsicum annuum
CAN.G137.4 Capsicum annuum
CAN.G474.16 Capsicum annuum
CANSAT21G0073 Cannabis sativa
CANSAT35G0066 Cannabis sativa
CARHR031630 Cardamine hirsuta
CARHR067600 Cardamine hirsuta
CARHR129630 Cardamine hirsuta
Carub.0001s3059 Capsella rubella
Carub.0002s2112 Capsella rubella
Carub.0004s1717 Capsella rubella
Ca_22658_v3 Cicer arietinum L.
Ca_25190_v3 Cicer arietinum L.
CBR_g48716 Chara braunii
Cc08_g03400 Coffea canephora
Cc08_g03410 Coffea canephora
CDE02G3148 Ceratophyllum demersum
CDE05G0657 Ceratophyllum demersum
Cfa012499 Carpinus fangiana
Cfa012512 Carpinus fangiana
Cfa012514 Carpinus fangiana
Cfa021255 Carpinus fangiana
Ciclev10002550m.g Citrus clementina
Ciclev10002623m.g Citrus clementina
Ciclev10003014m.g Citrus clementina
Ciclev10003570m.g Citrus clementina
Ciclev10003604m.g Citrus clementina
Ciclev10003612m.g Citrus clementina
Ciclev10003879m.g Citrus clementina
CiPaw.11G097400 Carya illinoinensis
CiPaw.11G097500 Carya illinoinensis
CiPaw.12G067300 Carya illinoinensis
ClCG09G011710 Citrullus lanatus
ClCG10G001370 Citrullus lanatus
ClCG10G001380 Citrullus lanatus
COL.COLO4_16958 Corchorus olitorius
COL.COLO4_16959 Corchorus olitorius
Cpa.g.sc13.304 Carica papaya
Cpa.g.sc90.11 Carica papaya
CsaV3_3G001440 Cucumis sativus L.
CsaV3_3G001460 Cucumis sativus L.
CsaV3_3G048910 Cucumis sativus L.
CSS0006499 Camellia sinensis var. sinensis
CSS0009097 Camellia sinensis var. sinensis
CSS0023919 Camellia sinensis var. sinensis
CSS0026703 Camellia sinensis var. sinensis
CSS0030959 Camellia sinensis var. sinensis
CSS0033524 Camellia sinensis var. sinensis
DCAR_004281 Daucus carota
DCAR_004282 Daucus carota
DCAR_008237 Daucus carota
Dinv25247 Davidia involucrata
Dinv28990 Davidia involucrata
Dinv28991 Davidia involucrata
Duzib068G0043 Durio zibethinus
Duzib068G1098 Durio zibethinus
Duzib205G0142 Durio zibethinus
Duzib205G0909 Durio zibethinus
ECA233G5493 Erigeron canadensis
ECA240G1207 Erigeron canadensis
ECA246G0855 Erigeron canadensis
EL10Ac5g12027 Beta vulgaris
EL10Ac5g12028 Beta vulgaris
Eucgr.D02219 Eucalyptus grandis
Eucgr.E00235 Eucalyptus grandis
FAN04G1000 Fragaria x ananassa
FAN04G3082 Fragaria x ananassa
FAN08G0310 Fragaria x ananassa
FAN08G3109 Fragaria x ananassa
FAN13G2852 Fragaria x ananassa
FAN18G1485 Fragaria x ananassa
FAN18G3398 Fragaria x ananassa
FAN18G3813 Fragaria x ananassa
FvH4_5g22890 Fragaria vesca
Glyma.01G015300 Glycine max
Glyma.09G207100 Glycine max
Glyma.10G041600 Glycine max
Glyma.13G128600 Glycine max
Gohir.A03G000041 Gossypium hirsutum
Gohir.A08G154400 Gossypium hirsutum
Gohir.D03G175500 Gossypium hirsutum
Gohir.D08G175050 Gossypium hirsutum
Gohir.D08G175075 Gossypium hirsutum
Gorai.003G184500 Gossypium raimondii
Gorai.004G182800 Gossypium raimondii
Gorai.004G182900 Gossypium raimondii
GSVIVG01013067001 Vitis vinifera
GSVIVG01013070001 Vitis vinifera
HanXRQChr02g0049371 Helianthus annuus
HanXRQChr13g0419911 Helianthus annuus
HanXRQChr17g0538091 Helianthus annuus
Haze_08150 Corylus avellana
Haze_08151 Corylus avellana
Haze_08158 Corylus avellana
Haze_08171 Corylus avellana
Haze_08172 Corylus avellana
Haze_09168 Corylus avellana
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla
Hma1.2p1_0870F.1_g230830 Hydrangea macrophylla
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla
HPP92_025448 Vanilla planifolia
Hund11196 Selenicereus undatus
Hund14363 Selenicereus undatus
Hund14364 Selenicereus undatus
Lalb_Chr05g0225791 Lupinus albus
Lalb_Chr09g0325541 Lupinus albus
Lalb_Chr16g0381151 Lupinus albus
Lj1g0006191 Lotus japonicus
Lj2g0009669 Lotus japonicus
Lj8A306G57 Lonicera japonica
Lj8C306G7 Lonicera japonica
Lsat_1_v5_gn_3_19620 Lactuca sativa
Lsat_1_v5_gn_6_3520 Lactuca sativa
Lsat_1_v5_gn_6_95801 Lactuca sativa
Manes.04G058600 Manihot esculenta
Manes.15G188200 Manihot esculenta
Mapoly0067s0029 Marchantia polymorpha
Mapoly0149s0010 Marchantia polymorpha
MCO11G506 Micromonas commoda
MD06G1025400 Malus domestica
MD06G1025500 Malus domestica
MD16G1280900 Malus domestica
Medtr2g014320 Medicago truncatula
Medtr5g029600 Medicago truncatula
Medtr8g066470 Medicago truncatula
Medtr8g066600 Medicago truncatula
MELO3C003432.2 Cucumis melo
MELO3C013830.2 Cucumis melo
MELO3C013831.2 Cucumis melo
Migut.A01083 Erythranthe guttata
Migut.E00774 Erythranthe guttata
MSTRG.13744 Avicennia marina
MSTRG.1999 Avicennia marina
Nitab4.5_0000109g0080 Nicotiana tabacum
Nitab4.5_0000529g0040 Nicotiana tabacum
Nitab4.5_0000556g0150 Nicotiana tabacum
Nitab4.5_0001595g0030 Nicotiana tabacum
Nitab4.5_0001632g0030 Nicotiana tabacum
Nitab4.5_0002778g0070 Nicotiana tabacum
Nn1g00186 Nelumbo nucifera
Nn1g00187 Nelumbo nucifera
Nn3g19407 Nelumbo nucifera
Nn3g19408 Nelumbo nucifera
Oeu028869.2 Olea europaea
Os02g0127900 Oryza sativa ssp. japonica
Os02g0140101 Oryza sativa ssp. japonica
Os11g0311550 Oryza sativa ssp. japonica
Peaxi162Scf00038g00010 Petunia axillaris
Peaxi162Scf00045g00216 Petunia axillaris
Peaxi162Scf00170g00816 Petunia axillaris
Peaxi162Scf00185g00821 Petunia axillaris
PGR031G2620 Punica granatum
PGR042G0491 Punica granatum
PGR042G2052 Punica granatum
PGSC0003DMG400003487 Solanum tuberosum
PGSC0003DMG400014808 Solanum tuberosum
PGSC0003DMG400016734 Solanum tuberosum
PGSC0003DMG400016784 Solanum tuberosum
PGSC0003DMG400043827 Solanum tuberosum
Phvul.002G137900 Phaseolus vulgaris
Phvul.003G283500 Phaseolus vulgaris
Phvul.003G283700 Phaseolus vulgaris
Potri.001G138100 Populus trichocarpa
Potri.001G138200 Populus trichocarpa
Potri.003G095600 Populus trichocarpa
Pp3c18_19000 Physcomitrium patens
Pp3c21_10750 Physcomitrium patens
Pp3c22_2990 Physcomitrium patens
Prupe.5G029600 Prunus persica
Prupe.5G029700 Prunus persica
Psat2g138920 Pisum sativum
Psat4g121840 Pisum sativum
Psat4g122960 Pisum sativum
PSO339G0280 Papaver somniferum
PSO339G4108 Papaver somniferum
PSO384G0605 Papaver somniferum
PSO384G4479 Papaver somniferum
QL12p001291 Quercus lobata
QL12p001301 Quercus lobata
RcHm_v2.0_Chr7g0211591 Rosa chinensis
RcHm_v2.0_Chr7g0211611 Rosa chinensis
Rhsim07G0131100 Rhododendron simsii
Rhsim11G0019800 Rhododendron simsii
Sabra01G0106900 Salix brachista
Sabra03G0064500 Salix brachista
SalBow1G6210 Salvia bowleyana
SalBow6G3465 Salvia bowleyana
Sc22g0001810 Simmondsia chinensis
Sed0007566 Sechium edule
Sed0013912 Sechium edule
Sed0016521 Sechium edule
SEGI_14802 Sequoiadendron giganteum
SEGI_33523 Sequoiadendron giganteum
SEGI_36022 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09240 Striga asiatica
SGA_v2.0_scaffold20G09262 Striga asiatica
SHI07360 Sapria himalayana
SHI07361 Sapria himalayana
SMO347G0656 Selaginella moellendorffii
Solyc06g066400.3 Solanum lycopersicum
Solyc08g005210.3 Solanum lycopersicum
Solyc08g076510.3 Solanum lycopersicum
Sopen06g021590 Solanum pennellii
Sopen08g001240 Solanum pennellii
Sopen08g025090 Solanum pennellii
Sp1g27940 Schrenkiella parvula
Sp4g17700 Schrenkiella parvula
Sp5g29500 Schrenkiella parvula
TAR119G0002 Trochodendron aralioides
TAR375G0363 Trochodendron aralioides
THA.LOC104798489 Tarenaya hassleriana
THA.LOC104804589 Tarenaya hassleriana
THA.LOC104808763 Tarenaya hassleriana
THA.LOC104814421 Tarenaya hassleriana
Thecc.03G308500 Theobroma cacao
Thecc.03G308600 Theobroma cacao
Thhalv10008414m.g Eutrema salsugineum
Thhalv10017272m.g Eutrema salsugineum
Thhalv10019650m.g Eutrema salsugineum
TPR.G3315 Trifolium pratense
TPR.G3364 Trifolium pratense
TPR.G8093 Trifolium pratense
TWI15G0743 Tripterygium wilfordii
TWI60G0128 Tripterygium wilfordii
TWI60G0513 Tripterygium wilfordii
TWI81G0136 Tripterygium wilfordii
unitig_32.g10897 Utricularia gibba
vmacro00293 Vaccinium macrocarpon
vmacro00300 Vaccinium macrocarpon
vmacro14193 Vaccinium macrocarpon
VMungo0251G2329 Vigna mungo
VMungo1215G2489 Vigna mungo
Zm00001eb208800 Zea mays
Zm00001eb385430 Zea mays

User provided reference genes

Program Settings