Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p28770 Brassica napus
A06p31570 Brassica napus
A09p29050 Brassica napus
Aa31LG1G17150 Aethionema arabicum
Aa31LG4G8960 Aethionema arabicum
Aa31LG9G15040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.503 Anthoceros agrestis
Actinidia01379 Actinidia chinensis
Actinidia04749 Actinidia chinensis
Actinidia12220 Actinidia chinensis
Actinidia17769 Actinidia chinensis
Actinidia26826 Actinidia chinensis
Ah.05g173270 Amaranthus hybridus
AL6G43470 Arabidopsis lyrata
AL8G42240 Arabidopsis lyrata
Aqoxy2G00531 Aquilegia oxysepala
Aqoxy6G00409 Aquilegia oxysepala
Aqoxy6G01368 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.68WXI5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IIK88Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.US2LT7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XSKM5Y Arachis hypogaea
AT4G09830 Arabidopsis thaliana
AT5G64780 Arabidopsis thaliana
ATR0697G032 Amborella trichopoda
ATR1120G040 Amborella trichopoda
ATR1120G136 Amborella trichopoda
Atru.chr13.2011 Acer truncatum
Atru.chr4.733 Acer truncatum
AUR62026638 Chenopodium quinoa
AUR62034896 Chenopodium quinoa
BcaB01g02771 Brassica carinata
BcaB02g09822 Brassica carinata
BcaC01g02711 Brassica carinata
BcaC01g04698 Brassica carinata
BcaC01g04699 Brassica carinata
BcaC04g20989 Brassica carinata
BolC3t15788H Brassica oleracea
BolC3t15791H Brassica oleracea
BolC3t18399H Brassica oleracea
BolC9t56520H Brassica oleracea
BraA03t12075Z Brassica rapa
BraA06t26094Z Brassica rapa
BraA09t38471Z Brassica rapa
C03p34790 Brassica napus
C03p34810 Brassica napus
C03p61390 Brassica napus
C09p36900 Brassica napus
CAN.G26.49 Capsicum annuum
CAN.G495.12 Capsicum annuum
CANSAT01G0730 Cannabis sativa
CARHR260830 Cardamine hirsuta
CARHR278770 Cardamine hirsuta
Carub.0005s2541 Capsella rubella
Carub.0006s2830 Capsella rubella
Carub.0007s0177 Capsella rubella
Carub.0008s2559 Capsella rubella
Ca_04672_v3 Cicer arietinum L.
Ca_04673_v3 Cicer arietinum L.
Ca_17676_v3 Cicer arietinum L.
Ca_29602_v3 Cicer arietinum L.
CBR_g51033 Chara braunii
Cc10_g15200 Coffea canephora
CDE02G0346 Ceratophyllum demersum
CDE04G0162 Ceratophyllum demersum
CDE04G2436 Ceratophyllum demersum
CDE06G1694 Ceratophyllum demersum
Cfa002781 Carpinus fangiana
Cfa018285 Carpinus fangiana
Ciclev10002494m.g Citrus clementina
Ciclev10026489m.g Citrus clementina
CiPaw.03G132000 Carya illinoinensis
CiPaw.15G012700 Carya illinoinensis
CiPaw.16G008600 Carya illinoinensis
ClCG09G010190 Citrullus lanatus
COL.COLO4_03466 Corchorus olitorius
COL.COLO4_03467 Corchorus olitorius
COL.COLO4_13788 Corchorus olitorius
COL.COLO4_13789 Corchorus olitorius
Cpa.g.sc2134.1 Carica papaya
Cpa.g.sc26.87 Carica papaya
Cpa.g.sc72.23 Carica papaya
Cre17.g731900 Chlamydomonas reinhardtii
CsaV3_7G024530 Cucumis sativus L.
CSS0028410 Camellia sinensis var. sinensis
CSS0050185 Camellia sinensis var. sinensis
DCAR_001162 Daucus carota
DCAR_032193 Daucus carota
Dinv01108 Davidia involucrata
Dinv13476 Davidia involucrata
Dinv19458 Davidia involucrata
Dinv25897 Davidia involucrata
Dinv41041 Davidia involucrata
Duzib041G0158 Durio zibethinus
Duzib093G1096 Durio zibethinus
Duzib116G0127 Durio zibethinus
Duzib147G1096 Durio zibethinus
Duzib147G1621 Durio zibethinus
Duzib187G1409 Durio zibethinus
Duzib264G0937 Durio zibethinus
Duzib264G1259 Durio zibethinus
ECA246G4986 Erigeron canadensis
ECA248G1836 Erigeron canadensis
EL10Ac1g01604 Beta vulgaris
Eucgr.I00298 Eucalyptus grandis
FAN08G0370 Fragaria x ananassa
FAN15G3006 Fragaria x ananassa
FAN18G4361 Fragaria x ananassa
FAN20G2457 Fragaria x ananassa
FAN24G1735 Fragaria x ananassa
FAN27G2080 Fragaria x ananassa
FvH4_2g13040 Fragaria vesca
FvH4_5g34113 Fragaria vesca
Glyma.02G079200 Glycine max
Glyma.05G185900 Glycine max
Glyma.08G144000 Glycine max
Glyma.10G221800 Glycine max
Glyma.16G163600 Glycine max
Glyma.20G169800 Glycine max
Gohir.A02G062800 Gossypium hirsutum
Gohir.A02G136600 Gossypium hirsutum
Gohir.A02G136700 Gossypium hirsutum
Gohir.A05G246200 Gossypium hirsutum
Gohir.A11G054300 Gossypium hirsutum
Gohir.D02G068400 Gossypium hirsutum
Gohir.D03G047300 Gossypium hirsutum
Gohir.D03G047400 Gossypium hirsutum
Gohir.D05G247700 Gossypium hirsutum
Gohir.D06G180125 Gossypium hirsutum
Gohir.D11G057800 Gossypium hirsutum
Gohir.D11G227200 Gossypium hirsutum
Gorai.002G149700 Gossypium raimondii
Gorai.003G048400 Gossypium raimondii
Gorai.003G048500 Gossypium raimondii
Gorai.005G077300 Gossypium raimondii
Gorai.007G063000 Gossypium raimondii
Gorai.009G258500 Gossypium raimondii
Gorai.010G211200 Gossypium raimondii
GSVIVG01015375001 Vitis vinifera
GSVIVG01022271001 Vitis vinifera
GSVIVG01025474001 Vitis vinifera
GSVIVG01034580001 Vitis vinifera
HanXRQChr01g0021431 Helianthus annuus
HanXRQChr04g0115651 Helianthus annuus
HanXRQChr05g0162371 Helianthus annuus
HanXRQChr11g0320241 Helianthus annuus
Haze_17802 Corylus avellana
Haze_25078 Corylus avellana
Hma1.2p1_0071F.1_g038100 Hydrangea macrophylla
Hma1.2p1_0358F.1_g134720 Hydrangea macrophylla
Hma1.2p1_0678F.1_g202010 Hydrangea macrophylla
Hma1.2p1_0880F.1_g231880 Hydrangea macrophylla
HPP92_000680 Vanilla planifolia
HPP92_006453 Vanilla planifolia
HPP92_006454 Vanilla planifolia
Hund17481 Selenicereus undatus
Lalb_Chr01g0009801 Lupinus albus
Lalb_Chr02g0141541 Lupinus albus
Lalb_Chr06g0161701 Lupinus albus
Lalb_Chr13g0296291 Lupinus albus
Lalb_Chr21g0305581 Lupinus albus
Lj2A568T45 Lonicera japonica
Lj2g0022568 Lotus japonicus
Lj4A703G51 Lonicera japonica
Lj4C861G9 Lonicera japonica
Lj4g0009819 Lotus japonicus
Lj5g0024581 Lotus japonicus
Lj7A382G70 Lonicera japonica
Lsat_1_v5_gn_1_68741 Lactuca sativa
Lsat_1_v5_gn_6_101620 Lactuca sativa
Lsat_1_v5_gn_9_42141 Lactuca sativa
Manes.02G183100 Manihot esculenta
Manes.18G094600 Manihot esculenta
Mapoly0012s0182 Marchantia polymorpha
Mapoly0107s0056 Marchantia polymorpha
MBI01_g34162_MAGBIO Magnolia biondii
MBI04_g08943_MAGBIO Magnolia biondii
MCO08G278 Micromonas commoda
MD05G1033000 Malus domestica
MD10G1034000 Malus domestica
Medtr1g098250 Medicago truncatula
Medtr6g043220 Medicago truncatula
Medtr8g092210 Medicago truncatula
MELO3C024074.2 Cucumis melo
Migut.H02453 Erythranthe guttata
Migut.L00058 Erythranthe guttata
MSTRG.15761 Avicennia marina
MSTRG.18028 Avicennia marina
MSTRG.23302 Avicennia marina
MSTRG.2520 Avicennia marina
Nitab4.5_0000099g0210 Nicotiana tabacum
Nitab4.5_0000872g0030 Nicotiana tabacum
Nitab4.5_0003411g0020 Nicotiana tabacum
Nitab4.5_0014173g0010 Nicotiana tabacum
Nn1g06003 Nelumbo nucifera
Nn5g28817 Nelumbo nucifera
Oeu001978.1 Olea europaea
Oeu015844.1 Olea europaea
Oeu028357.1 Olea europaea
Oeu028508.1 Olea europaea
Oeu054939.3 Olea europaea
Os01g0182500 Oryza sativa ssp. japonica
Os01g0589500 Oryza sativa ssp. japonica
Os08g0397900 Oryza sativa ssp. japonica
Os09g0360400 Oryza sativa ssp. japonica
Peaxi162Scf00160g01745 Petunia axillaris
Peaxi162Scf00360g00032 Petunia axillaris
PGR004G1052 Punica granatum
PGR044G2698 Punica granatum
PGSC0003DMG400014080 Solanum tuberosum
PGSC0003DMG400018792 Solanum tuberosum
PGSC0003DMG400025065 Solanum tuberosum
Phvul.002G267000 Phaseolus vulgaris
Phvul.004G091000 Phaseolus vulgaris
Phvul.004G091100 Phaseolus vulgaris
Phvul.007G083200 Phaseolus vulgaris
Potri.001G003400 Populus trichocarpa
Potri.002G064800 Populus trichocarpa
Potri.005G196400 Populus trichocarpa
Pp3c1_16490 Physcomitrium patens
Pp3c2_23750 Physcomitrium patens
Prupe.8G040300 Prunus persica
Psat0s1868g0120 Pisum sativum
Psat6g190800 Pisum sativum
Psat7g049840 Pisum sativum
PSO170G0441 Papaver somniferum
PSO170G5504 Papaver somniferum
PSO541G4513 Papaver somniferum
PSO675G3565 Papaver somniferum
PSO700G0061 Papaver somniferum
PSO700G0246 Papaver somniferum
QL02p038108 Quercus lobata
QL06p031450 Quercus lobata
RcHm_v2.0_Chr6g0274261 Rosa chinensis
RcHm_v2.0_Chr7g0233661 Rosa chinensis
Rhsim10G0146700 Rhododendron simsii
Rhsim10G0147500 Rhododendron simsii
Rhsim11G0087400 Rhododendron simsii
Sabra02G0051700 Salix brachista
Sabra05G0149700 Salix brachista
SalBow5G4188 Salvia bowleyana
SalBow6G5446 Salvia bowleyana
Sc16g0004120 Simmondsia chinensis
Sed0008098 Sechium edule
SGA_v2.0_scaffold238G43894 Striga asiatica
SGA_v2.0_scaffold2G01270 Striga asiatica
SGA_v2.0_scaffold3G01674 Striga asiatica
SHI11502 Sapria himalayana
Solyc04g071980.3 Solanum lycopersicum
Solyc12g056630.3 Solanum lycopersicum
Sopen04g027960 Solanum pennellii
Sopen12g029290 Solanum pennellii
Sp2g27850 Schrenkiella parvula
Sp6g07690 Schrenkiella parvula
TAR369G0654 Trochodendron aralioides
TAR376G1038 Trochodendron aralioides
TAR381G1358 Trochodendron aralioides
TAR623G0022 Trochodendron aralioides
TAR625G1021 Trochodendron aralioides
TAR628G0618 Trochodendron aralioides
THA.LOC104806765 Tarenaya hassleriana
THA.LOC104815997 Tarenaya hassleriana
Thecc.01G116400 Theobroma cacao
Thecc.01G116500 Theobroma cacao
Thecc.08G158900 Theobroma cacao
Thhalv10005018m.g Eutrema salsugineum
Thhalv10028989m.g Eutrema salsugineum
TPR.G15333 Trifolium pratense
TPR.G17019 Trifolium pratense
TPR.G2164 Trifolium pratense
TWI31G0087 Tripterygium wilfordii
TWI34G0925 Tripterygium wilfordii
TWI75G0578 Tripterygium wilfordii
TWI79G1424 Tripterygium wilfordii
unitig_0.g1738 Utricularia gibba
unitig_88.g27742 Utricularia gibba
unitig_899.g14617 Utricularia gibba
vmacro01491 Vaccinium macrocarpon
vmacro12880 Vaccinium macrocarpon
VMungo0251G0460 Vigna mungo
VMungo0464G0885 Vigna mungo
VMungo0720G0073 Vigna mungo
Zm00001eb098520 Zea mays
Zm00001eb160760 Zea mays
Zm00001eb310730 Zea mays

User provided reference genes

Program Settings