Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35090 Brassica napus
A02p15880 Brassica napus
A08p03470 Brassica napus
Aa31LG10G4190 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2647 Anthoceros agrestis
Actinidia12310 Actinidia chinensis
Actinidia33236 Actinidia chinensis
Actinidia34365 Actinidia chinensis
Ah.02g129310 Amaranthus hybridus
Ah.09g231880 Amaranthus hybridus
AL1G57460 Arabidopsis lyrata
AL279U10020 Arabidopsis lyrata
AL2G28510 Arabidopsis lyrata
AL3G33020 Arabidopsis lyrata
Aqoxy3G00474 Aquilegia oxysepala
Aqoxy5G00888 Aquilegia oxysepala
Aqoxy6G02690 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4F9CQB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7MA0TG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M9B1UW Arachis hypogaea
AT1G49910 Arabidopsis thaliana
AT1G69400 Arabidopsis thaliana
AT3G19590 Arabidopsis thaliana
ATR0208G008 Amborella trichopoda
ATR0730G197 Amborella trichopoda
Atru.chr11.1703 Acer truncatum
Atru.chr5.2375 Acer truncatum
AUR62005864 Chenopodium quinoa
AUR62032856 Chenopodium quinoa
AUR62034087 Chenopodium quinoa
AUR62042992 Chenopodium quinoa
BcaB04g20692 Brassica carinata
BcaB05g24447 Brassica carinata
BcaC09g48924 Brassica carinata
BolC1t04418H Brassica oleracea
BolC1t04454H Brassica oleracea
BolC2t08706H Brassica oleracea
BolC3t21252H Brassica oleracea
BraA01t03591Z Brassica rapa
BraA08t32378Z Brassica rapa
C01p44520 Brassica napus
C02p26340 Brassica napus
C03p89380 Brassica napus
CAN.G135.60 Capsicum annuum
CANSAT25G2730 Cannabis sativa
CANSAT54G2830 Cannabis sativa
CARHR062280 Cardamine hirsuta
CARHR095040 Cardamine hirsuta
Carub.0001s3912 Capsella rubella
Carub.0002s1600 Capsella rubella
Carub.0003s1943 Capsella rubella
Ca_04895_v3 Cicer arietinum L.
Ca_24354_v3 Cicer arietinum L.
CBR_g50927 Chara braunii
CBR_g633 Chara braunii
Cc02_g19760 Coffea canephora
Cc11_g12460 Coffea canephora
CDE01G0365 Ceratophyllum demersum
CDE04G2378 Ceratophyllum demersum
Cfa004637 Carpinus fangiana
Cfa022390 Carpinus fangiana
Ciclev10028761m.g Citrus clementina
Ciclev10033345m.g Citrus clementina
CiPaw.05G016800 Carya illinoinensis
CiPaw.05G128800 Carya illinoinensis
CiPaw.06G166200 Carya illinoinensis
ClCG06G011760 Citrullus lanatus
ClCG09G022020 Citrullus lanatus
ClCG10G010490 Citrullus lanatus
COL.COLO4_27951 Corchorus olitorius
COL.COLO4_32527 Corchorus olitorius
Cpa.g.sc1.79 Carica papaya
Cpa.g.sc106.59 Carica papaya
Cre04.g215750 Chlamydomonas reinhardtii
CsaV3_4G000390 Cucumis sativus L.
CsaV3_5G025110 Cucumis sativus L.
CSS0002012 Camellia sinensis var. sinensis
CSS0009436 Camellia sinensis var. sinensis
CSS0027801 Camellia sinensis var. sinensis
CSS0031062 Camellia sinensis var. sinensis
DCAR_003608 Daucus carota
DCAR_029120 Daucus carota
DCAR_030985 Daucus carota
Dinv15800 Davidia involucrata
Dinv42231 Davidia involucrata
Duzib052G0254 Durio zibethinus
Duzib132G0475 Durio zibethinus
Duzib248G1619 Durio zibethinus
ECA233G4228 Erigeron canadensis
ECA236G1515 Erigeron canadensis
ECA240G3850 Erigeron canadensis
EL10Ac6g13280 Beta vulgaris
EL10Ac8g19381 Beta vulgaris
Eucgr.G02467 Eucalyptus grandis
Eucgr.I01072 Eucalyptus grandis
FAN02G3610 Fragaria x ananassa
FAN03G2767 Fragaria x ananassa
FAN07G0641 Fragaria x ananassa
FAN07G0691 Fragaria x ananassa
FAN15G0708 Fragaria x ananassa
FAN15G2929 Fragaria x ananassa
FAN17G0401 Fragaria x ananassa
FAN20G1170 Fragaria x ananassa
FAN20G2817 Fragaria x ananassa
FAN22G1489 Fragaria x ananassa
FAN24G0362 Fragaria x ananassa
FAN27G0049 Fragaria x ananassa
FAN27G2015 Fragaria x ananassa
FvH4_2g04170 Fragaria vesca
FvH4_4g30600 Fragaria vesca
FvH4_6g20380 Fragaria vesca
Glyma.01G054100 Glycine max
Glyma.02G112500 Glycine max
Glyma.10G257700 Glycine max
Glyma.10G258300 Glycine max
Glyma.20G132800 Glycine max
Glyma.20G133400 Glycine max
Gohir.A03G183200 Gossypium hirsutum
Gohir.A12G162800 Gossypium hirsutum
Gohir.A13G046300 Gossypium hirsutum
Gohir.D02G204800 Gossypium hirsutum
Gohir.D12G165900 Gossypium hirsutum
Gohir.D13G045401 Gossypium hirsutum
Gorai.005G232100 Gossypium raimondii
Gorai.008G178600 Gossypium raimondii
Gorai.013G050200 Gossypium raimondii
GSVIVG01012480001 Vitis vinifera
GSVIVG01037848001 Vitis vinifera
HanXRQChr03g0069911 Helianthus annuus
HanXRQChr12g0362711 Helianthus annuus
Haze_10233 Corylus avellana
Hma1.2p1_1023F.1_g248830 Hydrangea macrophylla
Hma1.2p1_1773F.1_g301720 Hydrangea macrophylla
HPP92_009535 Vanilla planifolia
HPP92_009546 Vanilla planifolia
Hund12570 Selenicereus undatus
Hund17706 Selenicereus undatus
Lalb_Chr05g0210771 Lupinus albus
Lalb_Chr10g0098521 Lupinus albus
Lalb_Chr10g0098531 Lupinus albus
Lj1g0013878 Lotus japonicus
Lj2A325G49 Lonicera japonica
Lj2g0021352 Lotus japonicus
Lj2g0021373 Lotus japonicus
Lj5C218T18 Lonicera japonica
Lsat_1_v5_gn_3_105841 Lactuca sativa
Lsat_1_v5_gn_3_18161 Lactuca sativa
Lsat_1_v5_gn_6_59520 Lactuca sativa
Lsat_1_v5_gn_7_85260 Lactuca sativa
Lsat_1_v5_gn_8_136161 Lactuca sativa
Lsat_1_v5_gn_8_46820 Lactuca sativa
Lsat_1_v5_gn_9_111820 Lactuca sativa
Manes.01G031300 Manihot esculenta
Manes.10G079800 Manihot esculenta
Mapoly0036s0153 Marchantia polymorpha
MBI16_g22909_MAGBIO Magnolia biondii
MBI16_g31592_MAGBIO Magnolia biondii
MBI19_g16131_MAGBIO Magnolia biondii
MBI19_g16133_MAGBIO Magnolia biondii
MCO16G403 Micromonas commoda
MD05G1098500 Malus domestica
MD10G1104300 Malus domestica
MD13G1067000 Malus domestica
MD13G1067100 Malus domestica
MD13G1067200 Malus domestica
MD16G1066300 Malus domestica
Medtr5g005120 Medicago truncatula
Medtr5g043000 Medicago truncatula
Medtr7g033060 Medicago truncatula
MELO3C000865.2 Cucumis melo
MELO3C017995.2 Cucumis melo
MELO3C033654.2 Cucumis melo
MELO3C033655.2 Cucumis melo
Migut.B00441 Erythranthe guttata
Migut.L01231 Erythranthe guttata
Migut.N01143 Erythranthe guttata
MSTRG.16683 Avicennia marina
MSTRG.5319 Avicennia marina
MSTRG.730 Avicennia marina
Nitab4.5_0000334g0100 Nicotiana tabacum
Nitab4.5_0001105g0080 Nicotiana tabacum
Nitab4.5_0011843g0030 Nicotiana tabacum
Nitab4.5_0012134g0010 Nicotiana tabacum
Nn1g04590 Nelumbo nucifera
Nn2g15747 Nelumbo nucifera
Nn4g23306 Nelumbo nucifera
Oeu021364.1 Olea europaea
Oeu037278.2 Olea europaea
Os03g0448600 Oryza sativa ssp. japonica
Os03g0758700 Oryza sativa ssp. japonica
Os07g0588500 Oryza sativa ssp. japonica
Peaxi162Scf00016g02810 Petunia axillaris
Peaxi162Scf00016g02844 Petunia axillaris
Peaxi162Scf00364g00232 Petunia axillaris
PGR120G0005 Punica granatum
PGR142G2817 Punica granatum
PGSC0003DMG400025750 Solanum tuberosum
PGSC0003DMG400027317 Solanum tuberosum
PGSC0003DMG400028334 Solanum tuberosum
Phvul.004G113600 Phaseolus vulgaris
Phvul.007G044000 Phaseolus vulgaris
Phvul.007G044700 Phaseolus vulgaris
Potri.001G295100 Populus trichocarpa
Potri.008G092100 Populus trichocarpa
Potri.009G089200 Populus trichocarpa
Potri.010G162700 Populus trichocarpa
Pp3c10_19320 Physcomitrium patens
Pp3c11_23580 Physcomitrium patens
Pp3c12_14410 Physcomitrium patens
Pp3c7_2520 Physcomitrium patens
PRCOL_00006606 Prasinoderma coloniale
Prupe.1G281000 Prunus persica
Prupe.8G143300 Prunus persica
Psat2g127480 Pisum sativum
Psat4g227840 Pisum sativum
PSO017G4125 Papaver somniferum
PSO170G0394 Papaver somniferum
PSO170G6207 Papaver somniferum
PSO357G0303 Papaver somniferum
PSO541G4953 Papaver somniferum
PSO675G5028 Papaver somniferum
QL03p070017 Quercus lobata
QL11p030894 Quercus lobata
RcHm_v2.0_Chr4g0439001 Rosa chinensis
RcHm_v2.0_Chr6g0253521 Rosa chinensis
Rhsim11G0153700 Rhododendron simsii
Rhsim12G0133500 Rhododendron simsii
RhsimUnG0124900 Rhododendron simsii
Sabra09G0069100 Salix brachista
Sabra16G0184500 Salix brachista
SalBow3G2017 Salvia bowleyana
Sc14g0008050 Simmondsia chinensis
Sc18g0003480 Simmondsia chinensis
Sed0005166 Sechium edule
Sed0011895 Sechium edule
Sed0014703 Sechium edule
SEGI_03950 Sequoiadendron giganteum
SEGI_04620 Sequoiadendron giganteum
SEGI_17434 Sequoiadendron giganteum
SEGI_40753 Sequoiadendron giganteum
SGA_v2.0_scaffold16G07746 Striga asiatica
SGA_v2.0_scaffold170G38776 Striga asiatica
SGA_v2.0_scaffold225G43030 Striga asiatica
SGA_v2.0_scaffold237G43843 Striga asiatica
SGA_v2.0_scaffold32G13002 Striga asiatica
SHI26353 Sapria himalayana
SHI26355 Sapria himalayana
SHI26367 Sapria himalayana
SMO116G0292 Selaginella moellendorffii
Solyc01g107160.3 Solanum lycopersicum
Solyc05g012720.3 Solanum lycopersicum
Solyc11g007640.2 Solanum lycopersicum
Sopen01g049420 Solanum pennellii
Sopen05g007550 Solanum pennellii
Sp1g36790 Schrenkiella parvula
Sp3g17630 Schrenkiella parvula
Sp5g24450 Schrenkiella parvula
TAR381G0570 Trochodendron aralioides
TAR622G1234 Trochodendron aralioides
TAR625G0713 Trochodendron aralioides
TAR628G1237 Trochodendron aralioides
THA.LOC104808613 Tarenaya hassleriana
THA.LOC104815226 Tarenaya hassleriana
THA.LOC104825383 Tarenaya hassleriana
Thecc.02G115700 Theobroma cacao
Thecc.02G338300 Theobroma cacao
Thhalv10011632m.g Eutrema salsugineum
Thhalv10018903m.g Eutrema salsugineum
Thhalv10021448m.g Eutrema salsugineum
TPR.G17616 Trifolium pratense
TPR.G19947 Trifolium pratense
TPR.G30752 Trifolium pratense
TPR.G35933 Trifolium pratense
TPR.G39575 Trifolium pratense
TPR.G4815 Trifolium pratense
TPR.G8288 Trifolium pratense
TWI14G0004 Tripterygium wilfordii
TWI23G1219 Tripterygium wilfordii
TWI75G0147 Tripterygium wilfordii
unitig_26.g9432 Utricularia gibba
vmacro01968 Vaccinium macrocarpon
vmacro16357 Vaccinium macrocarpon
VMungo0720G0450 Vigna mungo
VMungo0720G2618 Vigna mungo
VMungo1215G0232 Vigna mungo
Zm00001eb011600 Zea mays
Zm00001eb057920 Zea mays

User provided reference genes

Program Settings