Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p32180 Brassica napus
A01p33440 Brassica napus
A03p43070 Brassica napus
A04p00080 Brassica napus
A09p55090 Brassica napus
Aa31LG10G17270 Aethionema arabicum
Aa31LG8G9440 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis
Actinidia03565 Actinidia chinensis
Actinidia04496 Actinidia chinensis
Actinidia08457 Actinidia chinensis
Actinidia18524 Actinidia chinensis
Actinidia27516 Actinidia chinensis
Actinidia29334 Actinidia chinensis
Actinidia40105 Actinidia chinensis
AL3G37320 Arabidopsis lyrata
AL5G46280 Arabidopsis lyrata
Aqoxy2G03486 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0228NK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D98VB5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I7ZHZM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LX9R2K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ML3LVJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NGGE7T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R6GRWT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YZC8KD Arachis hypogaea
AT3G22942 Arabidopsis thaliana
AT3G63420 Arabidopsis thaliana
ATR0626G331 Amborella trichopoda
ATR0665G333 Amborella trichopoda
Atru.chr4.2318 Acer truncatum
Atru.chr5.1536 Acer truncatum
AUR62028028 Chenopodium quinoa
BcaB02g08059 Brassica carinata
BcaB03g14641 Brassica carinata
BcaB04g20484 Brassica carinata
BcaC01g03410 Brassica carinata
BcaC07g40808 Brassica carinata
BcaC09g49225 Brassica carinata
BcaC09g49226 Brassica carinata
BolC1t04075H Brassica oleracea
BolC3t17553H Brassica oleracea
BolC4t24518H Brassica oleracea
BraA01t03343Z Brassica rapa
BraA01t03465Z Brassica rapa
BraA03t13449Z Brassica rapa
BraA04t15728Z Brassica rapa
BraA09t40916Z Brassica rapa
C01p41210 Brassica napus
C03p52860 Brassica napus
C04p29870 Brassica napus
C08p38030 Brassica napus
CAN.G749.11 Capsicum annuum
CAN.G940.19 Capsicum annuum
CAN.G947.19 Capsicum annuum
CANSAT25G1930 Cannabis sativa
CANSAT25G3773 Cannabis sativa
CANSAT78G0524 Cannabis sativa
CARHR098880 Cardamine hirsuta
CARHR291560 Cardamine hirsuta
Carub.0003s2307 Capsella rubella
Carub.0005s3004 Capsella rubella
Ca_09722_v3 Cicer arietinum L.
Cc03_g04470 Coffea canephora
Cc03_g16050 Coffea canephora
CDE05G1226 Ceratophyllum demersum
CDE05G1970 Ceratophyllum demersum
Ciclev10006282m.g Citrus clementina
Ciclev10022979m.g Citrus clementina
CiPaw.01G193600 Carya illinoinensis
CiPaw.02G118700 Carya illinoinensis
CiPaw.07G086200 Carya illinoinensis
CiPaw.07G215100 Carya illinoinensis
CiPaw.08G017400 Carya illinoinensis
ClCG05G004760 Citrullus lanatus
ClCG05G017400 Citrullus lanatus
ClCG06G006560 Citrullus lanatus
ClCG07G000530 Citrullus lanatus
COL.COLO4_09172 Corchorus olitorius
COL.COLO4_13177 Corchorus olitorius
COL.COLO4_13178 Corchorus olitorius
Cpa.g.sc42.61 Carica papaya
CsaV3_2G013330 Cucumis sativus L.
CsaV3_2G013810 Cucumis sativus L.
CsaV3_3G012780 Cucumis sativus L.
CsaV3_3G046910 Cucumis sativus L.
CSS0011418 Camellia sinensis var. sinensis
CSS0021636 Camellia sinensis var. sinensis
CSS0047440 Camellia sinensis var. sinensis
DCAR_000696 Daucus carota
DCAR_002359 Daucus carota
DCAR_024192 Daucus carota
Dinv09446 Davidia involucrata
Dinv13530 Davidia involucrata
Dinv14063 Davidia involucrata
Dinv44599 Davidia involucrata
Duzib052G0941 Durio zibethinus
Duzib133G1543 Durio zibethinus
Duzib138G1466 Durio zibethinus
Duzib211G0265 Durio zibethinus
Duzib212G0042 Durio zibethinus
ECA233G4587 Erigeron canadensis
ECA240G0675 Erigeron canadensis
ECA246G4472 Erigeron canadensis
EL10Ac2g03650 Beta vulgaris
EL10Ac3g06275 Beta vulgaris
Eucgr.B01476 Eucalyptus grandis
Eucgr.G01916 Eucalyptus grandis
Eucgr.H03396 Eucalyptus grandis
FAN12G3469 Fragaria x ananassa
FAN15G0768 Fragaria x ananassa
FAN15G1792 Fragaria x ananassa
FAN15G2718 Fragaria x ananassa
FAN17G0856 Fragaria x ananassa
FAN20G0999 Fragaria x ananassa
FAN20G1891 Fragaria x ananassa
FAN22G2026 Fragaria x ananassa
FAN24G2445 Fragaria x ananassa
FAN24G2614 Fragaria x ananassa
FAN27G1471 Fragaria x ananassa
FAN27G2504 Fragaria x ananassa
FvH4_2g22840 Fragaria vesca
FvH4_2g30640 Fragaria vesca
FvH4_4g01800 Fragaria vesca
Glyma.02G143500 Glycine max
Glyma.10G030900 Glycine max
Glyma.10G178700 Glycine max
Glyma.11G175119 Glycine max
Glyma.14G132400 Glycine max
Glyma.17G200900 Glycine max
Glyma.20G211400 Glycine max
Gohir.A08G062800 Gossypium hirsutum
Gohir.A09G220600 Gossypium hirsutum
Gohir.A10G117266 Gossypium hirsutum
Gohir.A11G126050 Gossypium hirsutum
Gohir.D08G071900 Gossypium hirsutum
Gohir.D09G222900 Gossypium hirsutum
Gohir.D10G150000 Gossypium hirsutum
Gohir.D11G131350 Gossypium hirsutum
Gorai.004G075900 Gossypium raimondii
Gorai.006G244200 Gossypium raimondii
Gorai.007G140700 Gossypium raimondii
Gorai.011G167000 Gossypium raimondii
GSVIVG01018076001 Vitis vinifera
GSVIVG01035600001 Vitis vinifera
HanXRQChr03g0092851 Helianthus annuus
HanXRQChr13g0423531 Helianthus annuus
HanXRQChr16g0514691 Helianthus annuus
HanXRQChr17g0538641 Helianthus annuus
Haze_04631 Corylus avellana
Haze_11254 Corylus avellana
Hma1.2p1_0214F.1_g090750 Hydrangea macrophylla
HPP92_000928 Vanilla planifolia
HPP92_014055 Vanilla planifolia
Hund20657 Selenicereus undatus
Lalb_Chr06g0162741 Lupinus albus
Lalb_Chr08g0243661 Lupinus albus
Lalb_Chr19g0127861 Lupinus albus
Lj1g0015278 Lotus japonicus
Lj5g0000230 Lotus japonicus
Lj5g0017731 Lotus japonicus
Lj5g0020100 Lotus japonicus
Lsat_1_v5_gn_3_123940 Lactuca sativa
Lsat_1_v5_gn_3_26381 Lactuca sativa
Lsat_1_v5_gn_5_68120 Lactuca sativa
Manes.02G165500 Manihot esculenta
Manes.03G171400 Manihot esculenta
Manes.05G082600 Manihot esculenta
Manes.15G034200 Manihot esculenta
Manes.18G079300 Manihot esculenta
Mapoly0073s0064 Marchantia polymorpha
MD03G1256500 Malus domestica
MD08G1133500 Malus domestica
MD11G1277200 Malus domestica
MD13G1202200 Malus domestica
MD15G1110600 Malus domestica
MD16G1202400 Malus domestica
Medtr1g010050 Medicago truncatula
Medtr1g071100 Medicago truncatula
Medtr1g076580 Medicago truncatula
Medtr1g076640 Medicago truncatula
MELO3C003646.2 Cucumis melo
MELO3C006489.2 Cucumis melo
MELO3C014277.2 Cucumis melo
MELO3C031169.2 Cucumis melo
Migut.A00517 Erythranthe guttata
Migut.G00406 Erythranthe guttata
MSTRG.11828 Avicennia marina
MSTRG.4075 Avicennia marina
MSTRG.9944 Avicennia marina
Nitab4.5_0000941g0110 Nicotiana tabacum
Nitab4.5_0001159g0050 Nicotiana tabacum
Nitab4.5_0001327g0040 Nicotiana tabacum
Nitab4.5_0002398g0090 Nicotiana tabacum
Nn1g02504 Nelumbo nucifera
Nn3g19458 Nelumbo nucifera
Nn5g26942 Nelumbo nucifera
Oeu002907.1 Olea europaea
Oeu007491.1 Olea europaea
Oeu043467.1 Olea europaea
Os02g0137800 Oryza sativa ssp. japonica
Os03g0635100 Oryza sativa ssp. japonica
Peaxi162Scf00045g01334 Petunia axillaris
Peaxi162Scf00788g00012 Petunia axillaris
Peaxi162Scf00876g00115 Petunia axillaris
PGR004G0390 Punica granatum
PGR042G0876 Punica granatum
PGR142G4304 Punica granatum
PGSC0003DMG400006078 Solanum tuberosum
PGSC0003DMG400032814 Solanum tuberosum
PGSC0003DMG401016272 Solanum tuberosum
Phvul.001G057600 Phaseolus vulgaris
Phvul.007G111000 Phaseolus vulgaris
Phvul.007G175700 Phaseolus vulgaris
Potri.002G046900 Populus trichocarpa
Potri.002G081500 Populus trichocarpa
Potri.005G179600 Populus trichocarpa
Potri.005G216100 Populus trichocarpa
Potri.015G142500 Populus trichocarpa
Pp3c11_980 Physcomitrium patens
Pp3c2_28760 Physcomitrium patens
Prupe.1G024000 Prunus persica
Prupe.1G462900 Prunus persica
Prupe.2G330000 Prunus persica
Prupe.8G233500 Prunus persica
Psat0s2465g0080 Pisum sativum
Psat6g031800 Pisum sativum
Psat6g114080 Pisum sativum
PSO210G0026 Papaver somniferum
PSO210G4121 Papaver somniferum
PSO210G7530 Papaver somniferum
PSO461G0081 Papaver somniferum
QL06p000522 Quercus lobata
QL12p024631 Quercus lobata
QL12p042451 Quercus lobata
RcHm_v2.0_Chr4g0388841 Rosa chinensis
RcHm_v2.0_Chr6g0289751 Rosa chinensis
RcHm_v2.0_Chr6g0312271 Rosa chinensis
Rhsim02G0031300 Rhododendron simsii
Rhsim04G0195900 Rhododendron simsii
Sabra02G0037800 Salix brachista
Sabra05G0135800 Salix brachista
Sabra05G0165600 Salix brachista
Sabra15G0152500 Salix brachista
SalBow4G1874 Salvia bowleyana
Sc13g0004850 Simmondsia chinensis
Sed0012249 Sechium edule
Sed0012894 Sechium edule
Sed0023641 Sechium edule
Sed0025388 Sechium edule
SEGI_16021 Sequoiadendron giganteum
SEGI_39295 Sequoiadendron giganteum
SGA_v2.0_scaffold79G25610 Striga asiatica
Solyc08g005950.2 Solanum lycopersicum
Solyc09g082940.3 Solanum lycopersicum
Solyc12g096270.2 Solanum lycopersicum
Sopen08g001920 Solanum pennellii
Sopen09g031810 Solanum pennellii
Sopen12g032130 Solanum pennellii
Sp3g20630 Schrenkiella parvula
Sp5g00130 Schrenkiella parvula
TAR362G0818 Trochodendron aralioides
TAR365G0078 Trochodendron aralioides
TAR549G0004 Trochodendron aralioides
THA.LOC104808581 Tarenaya hassleriana
THA.LOC104822806 Tarenaya hassleriana
Thecc.01G269900 Theobroma cacao
Thecc.04G241600 Theobroma cacao
Thhalv10006334m.g Eutrema salsugineum
Thhalv10021823m.g Eutrema salsugineum
Thhalv10022265m.g Eutrema salsugineum
TPR.G11982 Trifolium pratense
TPR.G22810 Trifolium pratense
TPR.G39103 Trifolium pratense
TPR.G480 Trifolium pratense
TWI09G0544 Tripterygium wilfordii
TWI12G0017 Tripterygium wilfordii
TWI18G0883 Tripterygium wilfordii
TWI53G0837 Tripterygium wilfordii
TWI75G0117 Tripterygium wilfordii
unitig_748.g7385 Utricularia gibba
vmacro05086 Vaccinium macrocarpon
vmacro08390 Vaccinium macrocarpon
vmacro15392 Vaccinium macrocarpon
VMungo0647G1284 Vigna mungo
Zm00001eb050990 Zea mays
Zm00001eb231850 Zea mays

User provided reference genes

Program Settings