Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01500 Brassica napus
A04p19960 Brassica napus
A09p50020 Brassica napus
A10p25430 Brassica napus
Aa31LG10G12020 Aethionema arabicum
Aa31LG3G14840 Aethionema arabicum
Aa31LG5G11700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1687 Anthoceros agrestis
Actinidia06953 Actinidia chinensis
Actinidia09273 Actinidia chinensis
Actinidia09274 Actinidia chinensis
Actinidia16368 Actinidia chinensis
Actinidia39172 Actinidia chinensis
Ah.13g076990 Amaranthus hybridus
AL4G39400 Arabidopsis lyrata
AL5G38580 Arabidopsis lyrata
AL6G23190 Arabidopsis lyrata
Aqoxy2G00332 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.RJF4AH Arachis hypogaea
AT3G57090 Arabidopsis thaliana
AT5G12390 Arabidopsis thaliana
ATR1093G011 Amborella trichopoda
Atru.chr1.1288 Acer truncatum
AUR62030358 Chenopodium quinoa
AUR62040841 Chenopodium quinoa
BcaB06g28085 Brassica carinata
BcaC02g08330 Brassica carinata
BcaC04g19185 Brassica carinata
BcaC07g40026 Brassica carinata
BcaC07g40046 Brassica carinata
BcaC07g40075 Brassica carinata
BcaC07g40076 Brassica carinata
BcaNung01193 Brassica carinata
BcaNung03618 Brassica carinata
BcaNung06868 Brassica carinata
BolC2t06518H Brassica oleracea
BolC4t27092H Brassica oleracea
BolC8t50858H Brassica oleracea
BolC9t59284H Brassica oleracea
BraA02t05131Z Brassica rapa
BraA04t17580Z Brassica rapa
BraA09t40454Z Brassica rapa
BraA10t44607Z Brassica rapa
C02p05730 Brassica napus
C04p55610 Brassica napus
C08p32430 Brassica napus
C09p64500 Brassica napus
CAN.G100.77 Capsicum annuum
CAN.G1167.4 Capsicum annuum
CAN.G1255.2 Capsicum annuum
CAN.G206.115 Capsicum annuum
CAN.G575.97 Capsicum annuum
CAN.G641.49 Capsicum annuum
CANSAT64G0031 Cannabis sativa
CARHR136480 Cardamine hirsuta
CARHR167290 Cardamine hirsuta
CARHR200720 Cardamine hirsuta
Carub.0004s2366 Capsella rubella
Carub.0005s2391 Capsella rubella
Carub.0006s1089 Capsella rubella
Ca_06222_v3 Cicer arietinum L.
Ca_08404_v3 Cicer arietinum L.
CBR_g30283 Chara braunii
Cc01_g05680 Coffea canephora
Cc03_g07840 Coffea canephora
Cc04_g06420 Coffea canephora
Cc04_g10960 Coffea canephora
Cc06_g18780 Coffea canephora
CDE09G0406 Ceratophyllum demersum
Cfa009839 Carpinus fangiana
Cfa016698 Carpinus fangiana
Ciclev10022600m.g Citrus clementina
CiPaw.10G038700 Carya illinoinensis
CiPaw.14G114200 Carya illinoinensis
CiPaw.14G114300 Carya illinoinensis
CiPaw.14G114400 Carya illinoinensis
CiPaw.14G114600 Carya illinoinensis
CiPaw.14G114700 Carya illinoinensis
ClCG03G012730 Citrullus lanatus
ClCG09G016030 Citrullus lanatus
COL.COLO4_35827 Corchorus olitorius
COL.COLO4_37557 Corchorus olitorius
Cpa.g.c46803 Carica papaya
Cpa.g.sc5.202 Carica papaya
Cre15.g635200 Chlamydomonas reinhardtii
CsaV3_1G043230 Cucumis sativus L.
CsaV3_4G027830 Cucumis sativus L.
CSS0003007 Camellia sinensis var. sinensis
CSS0010739 Camellia sinensis var. sinensis
CSS0027116 Camellia sinensis var. sinensis
CSS0032034 Camellia sinensis var. sinensis
CSS0039291 Camellia sinensis var. sinensis
CSS0041019 Camellia sinensis var. sinensis
CSS0045658 Camellia sinensis var. sinensis
CSS0046360 Camellia sinensis var. sinensis
DCAR_002118 Daucus carota
DCAR_016875 Daucus carota
DCAR_023842 Daucus carota
DCAR_031629 Daucus carota
Dinv05067 Davidia involucrata
Dinv08496 Davidia involucrata
Dinv36186 Davidia involucrata
Duzib056G0005 Durio zibethinus
Duzib093G2144 Durio zibethinus
Duzib128G1317 Durio zibethinus
Duzib170G0201 Durio zibethinus
ECA233G1614 Erigeron canadensis
ECA236G4941 Erigeron canadensis
ECA247G0875 Erigeron canadensis
ECA247G2162 Erigeron canadensis
ECA247G2818 Erigeron canadensis
ECA248G1717 Erigeron canadensis
EL10Ac3g07195 Beta vulgaris
Eucgr.B03723 Eucalyptus grandis
Eucgr.K01630 Eucalyptus grandis
FAN05G2425 Fragaria x ananassa
FAN05G3639 Fragaria x ananassa
FAN11G2018 Fragaria x ananassa
FAN11G2268 Fragaria x ananassa
FAN16G0501 Fragaria x ananassa
FAN16G2312 Fragaria x ananassa
FAN21G2012 Fragaria x ananassa
FAN21G2035 Fragaria x ananassa
FAN25G0320 Fragaria x ananassa
FAN25G0343 Fragaria x ananassa
FvH4_3g07330 Fragaria vesca
FvH4_3g28070 Fragaria vesca
FvH4_6g25160 Fragaria vesca
Glyma.02G280700 Glycine max
Glyma.03G129400 Glycine max
Glyma.14G033900 Glycine max
Glyma.19G131600 Glycine max
Gohir.A09G118600 Gossypium hirsutum
Gohir.A13G217900 Gossypium hirsutum
Gohir.D09G115428 Gossypium hirsutum
Gohir.D13G221666 Gossypium hirsutum
Gorai.006G133200 Gossypium raimondii
Gorai.013G252800 Gossypium raimondii
GSVIVG01033593001 Vitis vinifera
GSVIVG01033594001 Vitis vinifera
GSVIVG01037248001 Vitis vinifera
HanXRQChr04g0124771 Helianthus annuus
HanXRQChr06g0176551 Helianthus annuus
HanXRQChr08g0224161 Helianthus annuus
HanXRQChr09g0242031 Helianthus annuus
HanXRQChr12g0354001 Helianthus annuus
HanXRQChr12g0380301 Helianthus annuus
Haze_19721 Corylus avellana
Haze_19726 Corylus avellana
Haze_23207 Corylus avellana
Hma1.2p1_0037F.1_g023860 Hydrangea macrophylla
Hma1.2p1_0115F.1_g056010 Hydrangea macrophylla
Hma1.2p1_0470F.1_g159230 Hydrangea macrophylla
HPP92_012102 Vanilla planifolia
Hund07446 Selenicereus undatus
Hund19108 Selenicereus undatus
Hund21988 Selenicereus undatus
Lalb_Chr14g0365911 Lupinus albus
Lalb_Chr17g0348011 Lupinus albus
Lalb_Chr22g0357341 Lupinus albus
Lj1A1105T23 Lonicera japonica
Lj1A289G38 Lonicera japonica
Lj1A297G61 Lonicera japonica
Lj1g0021568 Lotus japonicus
LjContig00049g0026676 Lotus japonicus
Lsat_1_v5_gn_1_3400 Lactuca sativa
Lsat_1_v5_gn_2_25161 Lactuca sativa
Lsat_1_v5_gn_5_70900 Lactuca sativa
Lsat_1_v5_gn_6_98420 Lactuca sativa
Lsat_1_v5_gn_8_82540 Lactuca sativa
Manes.01G181200 Manihot esculenta
Manes.09G007900 Manihot esculenta
Mapoly0147s0019 Marchantia polymorpha
MBI13_g29516_MAGBIO Magnolia biondii
MCO11G438 Micromonas commoda
MD03G1168500 Malus domestica
MD03G1168600 Malus domestica
MD11G1194400 Malus domestica
MD14G1084200 Malus domestica
Medtr5g090010 Medicago truncatula
Medtr7g090210 Medicago truncatula
MELO3C015136.2 Cucumis melo
MELO3C019045.2 Cucumis melo
Migut.D00649 Erythranthe guttata
Migut.J01679 Erythranthe guttata
MSTRG.18455 Avicennia marina
MSTRG.21353 Avicennia marina
MSTRG.6384 Avicennia marina
Nitab4.5_0000515g0070 Nicotiana tabacum
Nitab4.5_0001290g0030 Nicotiana tabacum
Nitab4.5_0002310g0040 Nicotiana tabacum
Nitab4.5_0002726g0040 Nicotiana tabacum
Nitab4.5_0004018g0050 Nicotiana tabacum
Nitab4.5_0013859g0010 Nicotiana tabacum
Nn2g14908 Nelumbo nucifera
Nn7g36604 Nelumbo nucifera
Oeu025896.1 Olea europaea
Oeu029493.1 Olea europaea
Oeu029494.1 Olea europaea
Oeu061289.1 Olea europaea
Os01g0951800 Oryza sativa ssp. japonica
Os03g0356484 Oryza sativa ssp. japonica
Os05g0383000 Oryza sativa ssp. japonica
Peaxi162Scf00004g04121 Petunia axillaris
Peaxi162Scf00272g00826 Petunia axillaris
Peaxi162Scf01029g00416 Petunia axillaris
PGR102G0435 Punica granatum
PGR142G2520 Punica granatum
PGSC0003DMG400004644 Solanum tuberosum
PGSC0003DMG400008128 Solanum tuberosum
PGSC0003DMG400031242 Solanum tuberosum
Phvul.001G125100 Phaseolus vulgaris
Phvul.008G200000 Phaseolus vulgaris
Potri.006G041900 Populus trichocarpa
Potri.009G047300 Populus trichocarpa
Potri.016G038900 Populus trichocarpa
Pp3c14_18180 Physcomitrium patens
Pp3c17_23630 Physcomitrium patens
Prupe.4G258900 Prunus persica
Prupe.7G043800 Prunus persica
Psat2g019240 Pisum sativum
Psat3g077840 Pisum sativum
PSO210G5090 Papaver somniferum
PSO339G0995 Papaver somniferum
PSO339G3192 Papaver somniferum
PSO339G4753 Papaver somniferum
PSO384G1276 Papaver somniferum
PSO384G2959 Papaver somniferum
PSO384G3652 Papaver somniferum
PSO585G0028 Papaver somniferum
PSO585G0037 Papaver somniferum
QL07p008440 Quercus lobata
RcHm_v2.0_Chr2g0125041 Rosa chinensis
RcHm_v2.0_Chr5g0011611 Rosa chinensis
RcHm_v2.0_Chr5g0050751 Rosa chinensis
Rhsim04G0110400 Rhododendron simsii
Rhsim13G0212700 Rhododendron simsii
Sabra06G0028600 Salix brachista
Sabra09G0034600 Salix brachista
Sabra16G0040500 Salix brachista
Sabra16G0040700 Salix brachista
Sabra16G0045300 Salix brachista
SalBow6G2637 Salvia bowleyana
SalBow6G5015 Salvia bowleyana
Sc19g0008310 Simmondsia chinensis
Sed0000034 Sechium edule
Sed0013087 Sechium edule
Sed0021006 Sechium edule
SEGI_03910 Sequoiadendron giganteum
SEGI_17322 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30326 Striga asiatica
SGA_v2.0_scaffold8G04553 Striga asiatica
SMO203G0006 Selaginella moellendorffii
SMO357G0020 Selaginella moellendorffii
Solyc10g079550.3 Solanum lycopersicum
Solyc11g065100.3 Solanum lycopersicum
Solyc12g099770.2 Solanum lycopersicum
Sopen10g030190 Solanum pennellii
Sopen11g024840 Solanum pennellii
Sopen12g034400 Solanum pennellii
Sp4g05360 Schrenkiella parvula
Sp5g05470 Schrenkiella parvula
Sp6g31250 Schrenkiella parvula
TAR369G0505 Trochodendron aralioides
TAR623G0279 Trochodendron aralioides
THA.LOC104799119 Tarenaya hassleriana
THA.LOC104803275 Tarenaya hassleriana
Thecc.05G140200 Theobroma cacao
Thecc.09G244800 Theobroma cacao
Thhalv10006275m.g Eutrema salsugineum
Thhalv10014835m.g Eutrema salsugineum
Thhalv10017329m.g Eutrema salsugineum
TPR.G19358 Trifolium pratense
TPR.G9318 Trifolium pratense
TWI53G1562 Tripterygium wilfordii
TWI77G0857 Tripterygium wilfordii
unitig_52.g16898 Utricularia gibba
unitig_62.g23899 Utricularia gibba
unitig_62.g23900 Utricularia gibba
unitig_90.g27451 Utricularia gibba
vmacro04016 Vaccinium macrocarpon
vmacro04018 Vaccinium macrocarpon
vmacro09032 Vaccinium macrocarpon
VMungo0647G2399 Vigna mungo
VMungo1383G3168 Vigna mungo
Zm00001eb347110 Zea mays
Zm00001eb394510 Zea mays

User provided reference genes

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