Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02480 Brassica napus
A09p51120 Brassica napus
Aa31LG10G13170 Aethionema arabicum
Aa31LG5G3150 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3215 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.912 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.473 Anthoceros agrestis
Actinidia07306 Actinidia chinensis
Actinidia30156 Actinidia chinensis
Actinidia30442 Actinidia chinensis
Actinidia37518 Actinidia chinensis
Actinidia39341 Actinidia chinensis
Ah.01g003800 Amaranthus hybridus
Ah.02g112020 Amaranthus hybridus
AL1G13480 Arabidopsis lyrata
AL5G40360 Arabidopsis lyrata
Aqoxy1G03176 Aquilegia oxysepala
Aqoxy5G00208 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.47VIJ3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BVJT87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FX64UI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S0A29X Arachis hypogaea
AT1G03900 Arabidopsis thaliana
AT3G58600 Arabidopsis thaliana
ATR0602G063 Amborella trichopoda
ATR0736G205 Amborella trichopoda
Atru.chr5.1730 Acer truncatum
Atru.chr6.2813 Acer truncatum
AUR62011857 Chenopodium quinoa
AUR62024702 Chenopodium quinoa
AUR62038921 Chenopodium quinoa
AUR62038996 Chenopodium quinoa
BcaB02g08247 Brassica carinata
BcaB02g08254 Brassica carinata
BcaC02g10018 Brassica carinata
BcaC05g24487 Brassica carinata
BcaC05g24489 Brassica carinata
BcaC05g24490 Brassica carinata
BolC4t24959H Brassica oleracea
BolC5t29002H Brassica oleracea
BolC8t46881H Brassica oleracea
BraA04t15976Z Brassica rapa
BraA08t35616Z Brassica rapa
BraA09t40557Z Brassica rapa
BraA10t42512Z Brassica rapa
C04p33920 Brassica napus
CAN.G1855.1 Capsicum annuum
CAN.G456.27 Capsicum annuum
CANSAT01G0103 Cannabis sativa
CANSAT64G1759 Cannabis sativa
CARHR003220 Cardamine hirsuta
CARHR168990 Cardamine hirsuta
Carub.0001s0304 Capsella rubella
Carub.0005s2536 Capsella rubella
Ca_01461_v3 Cicer arietinum L.
Ca_09671_v3 Cicer arietinum L.
CBR_g11103 Chara braunii
CBR_g11118 Chara braunii
CBR_g30030 Chara braunii
Cc01_g18190 Coffea canephora
Cc05_g08140 Coffea canephora
CDE03G0166 Ceratophyllum demersum
CDE04G0285 Ceratophyllum demersum
CDE04G0524 Ceratophyllum demersum
CDE07G2052 Ceratophyllum demersum
Cfa002444 Carpinus fangiana
Cfa014717 Carpinus fangiana
Cfa021745 Carpinus fangiana
Ciclev10016120m.g Citrus clementina
Ciclev10021562m.g Citrus clementina
CiPaw.03G186900 Carya illinoinensis
CiPaw.03G266300 Carya illinoinensis
CiPaw.04G187900 Carya illinoinensis
ClCG00G001490 Citrullus lanatus
ClCG02G017940 Citrullus lanatus
ClCG07G001150 Citrullus lanatus
COL.COLO4_04022 Corchorus olitorius
COL.COLO4_33546 Corchorus olitorius
Cpa.g.sc165.15 Carica papaya
Cpa.g.sc209.32 Carica papaya
Cre07.g318000 Chlamydomonas reinhardtii
Cre13.g580500 Chlamydomonas reinhardtii
CsaV3_3G022120 Cucumis sativus L.
CsaV3_6G018490 Cucumis sativus L.
CSS0000380 Camellia sinensis var. sinensis
CSS0042466 Camellia sinensis var. sinensis
DCAR_010698 Daucus carota
DCAR_018494 Daucus carota
Dinv08785 Davidia involucrata
Dinv15458 Davidia involucrata
Dinv34638 Davidia involucrata
Duzib138G1348 Durio zibethinus
Duzib187G1999 Durio zibethinus
Duzib211G0026 Durio zibethinus
ECA233G0098 Erigeron canadensis
ECA247G3608 Erigeron canadensis
EL10Ac9g20914 Beta vulgaris
EL10As5g23478 Beta vulgaris
Eucgr.A01905 Eucalyptus grandis
Eucgr.K03254 Eucalyptus grandis
FAN02G4503 Fragaria x ananassa
FAN09G3060 Fragaria x ananassa
FAN09G4488 Fragaria x ananassa
FAN14G0453 Fragaria x ananassa
FAN15G1886 Fragaria x ananassa
FAN20G2656 Fragaria x ananassa
FAN24G3112 Fragaria x ananassa
FAN27G1824 Fragaria x ananassa
FvH4_2g21210 Fragaria vesca
FvH4_6g27130 Fragaria vesca
Glyma.10G038100 Glycine max
Glyma.12G209800 Glycine max
Glyma.13G124500 Glycine max
Glyma.13G291500 Glycine max
Gohir.A07G149900 Gossypium hirsutum
Gohir.A07G213780 Gossypium hirsutum
Gohir.A11G060300 Gossypium hirsutum
Gohir.D07G156200 Gossypium hirsutum
Gohir.D07G220100 Gossypium hirsutum
Gohir.D11G064400 Gossypium hirsutum
Gorai.001G179100 Gossypium raimondii
Gorai.001G254400 Gossypium raimondii
Gorai.007G069600 Gossypium raimondii
GSVIVG01020685001 Vitis vinifera
GSVIVG01028358001 Vitis vinifera
HanXRQChr02g0033551 Helianthus annuus
HanXRQChr10g0280811 Helianthus annuus
HanXRQChr15g0467691 Helianthus annuus
HanXRQChr16g0523891 Helianthus annuus
HanXRQChr17g0556741 Helianthus annuus
Haze_13349 Corylus avellana
Haze_24665 Corylus avellana
Hma1.2p1_0046F.1_g027630 Hydrangea macrophylla
Hma1.2p1_0046F.1_g027640 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078970 Hydrangea macrophylla
Hma1.2p1_0548F.1_g176655 Hydrangea macrophylla
Hma1.2p1_0576F.1_g181940 Hydrangea macrophylla
Hma1.2p1_0583F.1_g183020 Hydrangea macrophylla
HPP92_008551 Vanilla planifolia
HPP92_008595 Vanilla planifolia
HPP92_014032 Vanilla planifolia
HPP92_028364 Vanilla planifolia
HPP92_028365 Vanilla planifolia
Hund00913 Selenicereus undatus
Hund07830 Selenicereus undatus
Hund09609 Selenicereus undatus
Lalb_Chr02g0152561 Lupinus albus
Lalb_Chr14g0367411 Lupinus albus
Lalb_Chr21g0313971 Lupinus albus
Lalb_Chr22g0356871 Lupinus albus
Lj1A69G67 Lonicera japonica
Lj3g0014209 Lotus japonicus
Lj5g0013714 Lotus japonicus
Lj8A103G83 Lonicera japonica
Lsat_1_v5_gn_5_182881 Lactuca sativa
Lsat_1_v5_gn_6_36421 Lactuca sativa
Lsat_1_v5_gn_8_140141 Lactuca sativa
Lsat_1_v5_gn_8_41181 Lactuca sativa
Lsat_1_v5_gn_9_10500 Lactuca sativa
Manes.13G035500 Manihot esculenta
Manes.13G035700 Manihot esculenta
Manes.13G137900 Manihot esculenta
Mapoly0012s0162 Marchantia polymorpha
Mapoly0061s0032 Marchantia polymorpha
MBI07_g21391_MAGBIO Magnolia biondii
MBI13_g36730_MAGBIO Magnolia biondii
MBI13_g36731_MAGBIO Magnolia biondii
MBI14_g47764_MAGBIO Magnolia biondii
MCO06G272 Micromonas commoda
MD05G1194700 Malus domestica
MD09G1239500 Malus domestica
MD10G1181300 Malus domestica
MD17G1232600 Malus domestica
Medtr1g069765 Medicago truncatula
Medtr2g091185 Medicago truncatula
MELO3C012869.2 Cucumis melo
MELO3C019760.2 Cucumis melo
Migut.D00440 Erythranthe guttata
Migut.M00254 Erythranthe guttata
MSTRG.14315 Avicennia marina
MSTRG.18329 Avicennia marina
MSTRG.21483 Avicennia marina
Nitab4.5_0000326g0150 Nicotiana tabacum
Nitab4.5_0003827g0060 Nicotiana tabacum
Nitab4.5_0005593g0010 Nicotiana tabacum
Nitab4.5_0006107g0010 Nicotiana tabacum
Nitab4.5_0007062g0030 Nicotiana tabacum
Nitab4.5_0010797g0040 Nicotiana tabacum
Nn1g06880 Nelumbo nucifera
Nn1g09092 Nelumbo nucifera
Nn3g19697 Nelumbo nucifera
Oeu033802.1 Olea europaea
Oeu034956.1 Olea europaea
Oeu039147.1 Olea europaea
Oeu039672.2 Olea europaea
Os01g0614700 Oryza sativa ssp. japonica
Os10g0476000 Oryza sativa ssp. japonica
Peaxi162Scf00469g00131 Petunia axillaris
Peaxi162Scf00624g00314 Petunia axillaris
PGR042G2102 Punica granatum
PGR044G1680 Punica granatum
PGSC0003DMG400010315 Solanum tuberosum
PGSC0003DMG400020428 Solanum tuberosum
PGSC0003DMG401025510 Solanum tuberosum
PGSC0003DMG402025510 Solanum tuberosum
Phvul.005G096000 Phaseolus vulgaris
Phvul.007G191700 Phaseolus vulgaris
Potri.002G036400 Populus trichocarpa
Potri.005G226400 Populus trichocarpa
Potri.013G117900 Populus trichocarpa
Potri.019G089800 Populus trichocarpa
Pp3c12_5010 Physcomitrium patens
Pp3c15_9330 Physcomitrium patens
Pp3c4_15920 Physcomitrium patens
Pp3c9_8420 Physcomitrium patens
PRCOL_00001917 Prasinoderma coloniale
PRCOL_00004416 Prasinoderma coloniale
Prupe.2G061900 Prunus persica
Prupe.8G221400 Prunus persica
Psat5g275280 Pisum sativum
Psat6g054200 Pisum sativum
PSO210G6351 Papaver somniferum
PSO675G7331 Papaver somniferum
PSO832G3897 Papaver somniferum
QL08p041406 Quercus lobata
QL09p039635 Quercus lobata
RcHm_v2.0_Chr2g0128491 Rosa chinensis
RcHm_v2.0_Chr2g0129091 Rosa chinensis
RcHm_v2.0_Chr6g0287711 Rosa chinensis
RcHm_v2.0_Chr7g0209161 Rosa chinensis
Rhsim04G0074000 Rhododendron simsii
Rhsim12G0095200 Rhododendron simsii
Rhsim12G0096000 Rhododendron simsii
Rhsim13G0036200 Rhododendron simsii
RhsimUnG0084200 Rhododendron simsii
Sabra05G0174800 Salix brachista
Sabra13G0099800 Salix brachista
Sabra19G0100200 Salix brachista
Sabra19G0103400 Salix brachista
SalBow4G1524 Salvia bowleyana
Sc05g0000640 Simmondsia chinensis
Sc21g0003870 Simmondsia chinensis
Sed0006976 Sechium edule
Sed0010821 Sechium edule
Sed0010986 Sechium edule
Sed0018557 Sechium edule
SEGI_33378 Sequoiadendron giganteum
SEGI_40426 Sequoiadendron giganteum
SGA_v2.0_scaffold201G41363 Striga asiatica
SGA_v2.0_scaffold6G03209 Striga asiatica
SGA_v2.0_scaffold6G03211 Striga asiatica
SMO117G0140 Selaginella moellendorffii
SMO347G0337 Selaginella moellendorffii
Solyc06g008340.4 Solanum lycopersicum
Solyc07g053310.3 Solanum lycopersicum
Solyc09g066490.4 Solanum lycopersicum
Sopen06g003190 Solanum pennellii
Sopen07g027270 Solanum pennellii
Sopen09g028220 Solanum pennellii
Sp1g02750 Schrenkiella parvula
Sp2g08940 Schrenkiella parvula
Sp5g04270 Schrenkiella parvula
TAR362G1303 Trochodendron aralioides
TAR624G0815 Trochodendron aralioides
TAR626G1557 Trochodendron aralioides
TAR626G1802 Trochodendron aralioides
TAR633G0449 Trochodendron aralioides
THA.LOC104801150 Tarenaya hassleriana
THA.LOC104823209 Tarenaya hassleriana
THA.LOC104826045 Tarenaya hassleriana
Thecc.01G148600 Theobroma cacao
Thecc.01G255800 Theobroma cacao
Thhalv10003361m.g Eutrema salsugineum
Thhalv10006125m.g Eutrema salsugineum
TPR.G11609 Trifolium pratense
TPR.G5923 Trifolium pratense
TWI12G0280 Tripterygium wilfordii
TWI18G0990 Tripterygium wilfordii
TWI75G1021 Tripterygium wilfordii
unitig_22.g6222 Utricularia gibba
unitig_8.g3736 Utricularia gibba
vmacro02675 Vaccinium macrocarpon
vmacro09219 Vaccinium macrocarpon
VMungo0720G0619 Vigna mungo
VMungo0720G3189 Vigna mungo
VMungo1080G1187 Vigna mungo
Zm00001eb162030 Zea mays
Zm00001eb221890 Zea mays

User provided reference genes

Program Settings