Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p15860 Brassica napus
A07p35680 Brassica napus
A10p24660 Brassica napus
A10p27040 Brassica napus
Aa31LG1G12960 Aethionema arabicum
Aa31LG4G11480 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.853 Anthoceros agrestis
Actinidia03022 Actinidia chinensis
Actinidia12311 Actinidia chinensis
Actinidia26628 Actinidia chinensis
Actinidia28944 Actinidia chinensis
Actinidia33238 Actinidia chinensis
Ah.02g129290 Amaranthus hybridus
Ah.03g134590 Amaranthus hybridus
Ah.10g033350 Amaranthus hybridus
Ah.16g108180 Amaranthus hybridus
AL2G28490 Arabidopsis lyrata
AL6G24220 Arabidopsis lyrata
Aqoxy3G00470 Aquilegia oxysepala
Aqoxy7G01421 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.42ETRE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8HGI8X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BLC183 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EV1KHF Arachis hypogaea
AT1G69380 Arabidopsis thaliana
AT5G13610 Arabidopsis thaliana
ATR0594G061 Amborella trichopoda
ATR0730G203 Amborella trichopoda
Atru.chr11.1701 Acer truncatum
Atru.chr12.626 Acer truncatum
AUR62005867 Chenopodium quinoa
AUR62020805 Chenopodium quinoa
AUR62027901 Chenopodium quinoa
AUR62032859 Chenopodium quinoa
BcaB03g15898 Brassica carinata
BcaB03g15899 Brassica carinata
BcaB05g24445 Brassica carinata
BcaC03g15078 Brassica carinata
BcaC04g19093 Brassica carinata
BcaC04g19094 Brassica carinata
BcaNung05089 Brassica carinata
BolC2t08704H Brassica oleracea
BolC6t39377H Brassica oleracea
BolC9t59193H Brassica oleracea
BolC9t59454H Brassica oleracea
BraA07t31156Z Brassica rapa
BraA10t44529Z Brassica rapa
BraA10t44755Z Brassica rapa
C02p26320 Brassica napus
C06p40540 Brassica napus
C09p63470 Brassica napus
C09p66730 Brassica napus
CAN.G1340.19 Capsicum annuum
CAN.G944.1 Capsicum annuum
CANSAT56G4525 Cannabis sativa
CANSAT64G1366 Cannabis sativa
CARHR062260 Cardamine hirsuta
CARHR199830 Cardamine hirsuta
Carub.0002s1598 Capsella rubella
Carub.0006s1177 Capsella rubella
Carub.0007s0615 Capsella rubella
Ca_04896_v3 Cicer arietinum L.
Ca_21497_v3 Cicer arietinum L.
CBR_g4017 Chara braunii
Cc09_g02540 Coffea canephora
Cc11_g12430 Coffea canephora
CDE04G2811 Ceratophyllum demersum
CDE04G3173 Ceratophyllum demersum
CDE07G1629 Ceratophyllum demersum
Cfa001584 Carpinus fangiana
Cfa008916 Carpinus fangiana
Ciclev10031677m.g Citrus clementina
Ciclev10031839m.g Citrus clementina
CiPaw.01G277400 Carya illinoinensis
CiPaw.05G128600 Carya illinoinensis
ClCG02G013830 Citrullus lanatus
ClCG09G022070 Citrullus lanatus
COL.COLO4_23761 Corchorus olitorius
COL.COLO4_27946 Corchorus olitorius
Cpa.g.c46741 Carica papaya
Cpa.g.sc1.268 Carica papaya
Cpa.g.sc1264.1 Carica papaya
CsaV3_5G006340 Cucumis sativus L.
CsaV3_5G020790 Cucumis sativus L.
CsaV3_5G022960 Cucumis sativus L.
CSS0015111 Camellia sinensis var. sinensis
CSS0030671 Camellia sinensis var. sinensis
CSS0041857 Camellia sinensis var. sinensis
DCAR_006475 Daucus carota
DCAR_015268 Daucus carota
DCAR_027446 Daucus carota
Dinv11815 Davidia involucrata
Dinv16697 Davidia involucrata
Dinv16698 Davidia involucrata
Dinv31368 Davidia involucrata
Duzib106G1530 Durio zibethinus
Duzib128G1096 Durio zibethinus
Duzib251G0312 Durio zibethinus
ECA233G5092 Erigeron canadensis
ECA238G3210 Erigeron canadensis
ECA246G3544 Erigeron canadensis
EL10Ac2g03545 Beta vulgaris
EL10Ac6g13283 Beta vulgaris
Eucgr.B03187 Eucalyptus grandis
Eucgr.J01125 Eucalyptus grandis
FAN01G2195 Fragaria x ananassa
FAN03G0497 Fragaria x ananassa
FAN06G1257 Fragaria x ananassa
FAN07G1369 Fragaria x ananassa
FAN10G0603 Fragaria x ananassa
FAN12G2889 Fragaria x ananassa
FAN17G1413 Fragaria x ananassa
FAN22G0093 Fragaria x ananassa
FvH4_4g30570 Fragaria vesca
FvH4_7g20360 Fragaria vesca
Glyma.01G054300 Glycine max
Glyma.02G112800 Glycine max
Glyma.10G116500 Glycine max
Gohir.A05G305700 Gossypium hirsutum
Gohir.A13G021300 Gossypium hirsutum
Gohir.A13G079400 Gossypium hirsutum
Gohir.D05G305800 Gossypium hirsutum
Gohir.D13G021900 Gossypium hirsutum
Gohir.D13G079100 Gossypium hirsutum
Gorai.009G325800 Gossypium raimondii
Gorai.013G024700 Gossypium raimondii
Gorai.013G090500 Gossypium raimondii
GSVIVG01010097001 Vitis vinifera
GSVIVG01016351001 Vitis vinifera
HanXRQChr08g0219931 Helianthus annuus
HanXRQChr13g0414331 Helianthus annuus
HanXRQChr14g0460911 Helianthus annuus
HanXRQChr17g0545421 Helianthus annuus
Haze_11943 Corylus avellana
Haze_16945 Corylus avellana
Hma1.2p1_0192F.1_g083520 Hydrangea macrophylla
Hma1.2p1_0354F.1_g133680 Hydrangea macrophylla
HPP92_000793 Vanilla planifolia
HPP92_012066 Vanilla planifolia
HPP92_012070 Vanilla planifolia
HPP92_017527 Vanilla planifolia
HPP92_026790 Vanilla planifolia
Hund22464 Selenicereus undatus
Hund25200 Selenicereus undatus
Lalb_Chr04g0255811 Lupinus albus
Lalb_Chr10g0098551 Lupinus albus
Lalb_Chr19g0129061 Lupinus albus
Lj1A925T68 Lonicera japonica
Lj2g0015054 Lotus japonicus
Lj3C1032G18 Lonicera japonica
Lj6g0006383 Lotus japonicus
Lj8C94G18 Lonicera japonica
Lsat_1_v5_gn_2_116240 Lactuca sativa
Lsat_1_v5_gn_3_51640 Lactuca sativa
Lsat_1_v5_gn_8_18080 Lactuca sativa
Lsat_1_v5_gn_9_62960 Lactuca sativa
Manes.01G031200 Manihot esculenta
Manes.10G041200 Manihot esculenta
Mapoly0059s0101 Marchantia polymorpha
MBI14_g17613_MAGBIO Magnolia biondii
MBI16_g00638_MAGBIO Magnolia biondii
MBI18_g06567_MAGBIO Magnolia biondii
MCO14G042 Micromonas commoda
MD01G1113300 Malus domestica
MD07G1180700 Malus domestica
MD13G1066700 Malus domestica
MD16G1065900 Malus domestica
Medtr1g049180 Medicago truncatula
Medtr5g043180 Medicago truncatula
MELO3C002986.2 Cucumis melo
MELO3C011723.2 Cucumis melo
Migut.F02021 Erythranthe guttata
Migut.L01229 Erythranthe guttata
MSTRG.13438 Avicennia marina
MSTRG.27447 Avicennia marina
Nitab4.5_0000061g0310 Nicotiana tabacum
Nitab4.5_0000334g0140 Nicotiana tabacum
Nitab4.5_0003582g0090 Nicotiana tabacum
Nitab4.5_0004304g0010 Nicotiana tabacum
Nn2g10633 Nelumbo nucifera
Nn3g17357 Nelumbo nucifera
Oeu013471.1 Olea europaea
Oeu016757.1 Olea europaea
Oeu057243.1 Olea europaea
Oeu057651.1 Olea europaea
Os01g0764300 Oryza sativa ssp. japonica
Os07g0694800 Oryza sativa ssp. japonica
Peaxi162Scf00022g00144 Petunia axillaris
Peaxi162Scf00022g00145 Petunia axillaris
Peaxi162Scf00208g00075 Petunia axillaris
Peaxi162Scf00208g00078 Petunia axillaris
Peaxi162Scf00364g00135 Petunia axillaris
PGR044G2186 Punica granatum
PGR102G1537 Punica granatum
PGSC0003DMG400028386 Solanum tuberosum
Phvul.002G090200 Phaseolus vulgaris
Phvul.007G240000 Phaseolus vulgaris
Potri.008G045200 Populus trichocarpa
Potri.008G092400 Populus trichocarpa
Potri.010G162500 Populus trichocarpa
Potri.010G216300 Populus trichocarpa
Pp3c14_16900 Physcomitrium patens
Pp3c17_21470 Physcomitrium patens
Pp3c1_38350 Physcomitrium patens
PRCOL_00000226 Prasinoderma coloniale
Prupe.1G281200 Prunus persica
Prupe.2G220000 Prunus persica
Psat0s4546g0040 Pisum sativum
Psat2g127360 Pisum sativum
Psat3g173480 Pisum sativum
PSO017G0002 Papaver somniferum
PSO170G3338 Papaver somniferum
PSO210G5174 Papaver somniferum
PSO210G7453 Papaver somniferum
PSO339G2318 Papaver somniferum
PSO339G2743 Papaver somniferum
PSO339G3009 Papaver somniferum
PSO339G5381 Papaver somniferum
PSO384G0366 Papaver somniferum
PSO384G1585 Papaver somniferum
PSO478G3031 Papaver somniferum
PSO541G3687 Papaver somniferum
PSO541G6530 Papaver somniferum
PSO675G6794 Papaver somniferum
PSO801G0104 Papaver somniferum
PSO801G0481 Papaver somniferum
QL03p070031 Quercus lobata
QL08p057096 Quercus lobata
RcHm_v2.0_Chr1g0364321 Rosa chinensis
RcHm_v2.0_Chr4g0438971 Rosa chinensis
Rhsim03G0122000 Rhododendron simsii
Rhsim12G0133600 Rhododendron simsii
Sabra08G0031400 Salix brachista
Sabra08G0069200 Salix brachista
Sabra10G0123700 Salix brachista
Sabra10G0167400 Salix brachista
SalBow4G0377 Salvia bowleyana
Sc09g0006810 Simmondsia chinensis
Sc11g0002220 Simmondsia chinensis
Sed0001155 Sechium edule
Sed0011247 Sechium edule
Sed0014330 Sechium edule
SEGI_02401 Sequoiadendron giganteum
SEGI_25135 Sequoiadendron giganteum
SEGI_26338 Sequoiadendron giganteum
SEGI_30035 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33247 Striga asiatica
SGA_v2.0_scaffold287G47148 Striga asiatica
SHI28087 Sapria himalayana
SHI28089 Sapria himalayana
SMO013G0001 Selaginella moellendorffii
SMO236G0007 Selaginella moellendorffii
SMO364G0356 Selaginella moellendorffii
Solyc04g049850.3 Solanum lycopersicum
Solyc05g012690.4 Solanum lycopersicum
Sopen04g020130 Solanum pennellii
Sopen05g007520 Solanum pennellii
Sp5g24430 Schrenkiella parvula
Sp6g30420 Schrenkiella parvula
TAR622G0656 Trochodendron aralioides
TAR623G0861 Trochodendron aralioides
TAR633G2715 Trochodendron aralioides
TAR636G0305 Trochodendron aralioides
TAR636G1626 Trochodendron aralioides
THA.LOC104809890 Tarenaya hassleriana
THA.LOC104822025 Tarenaya hassleriana
Thecc.02G337300 Theobroma cacao
Thecc.02G337800 Theobroma cacao
Thecc.10G066200 Theobroma cacao
Thhalv10013692m.g Eutrema salsugineum
Thhalv10018736m.g Eutrema salsugineum
TPR.G19949 Trifolium pratense
TPR.G22174 Trifolium pratense
TPR.G35692 Trifolium pratense
TPR.G35699 Trifolium pratense
TWI15G0716 Tripterygium wilfordii
TWI38G0472 Tripterygium wilfordii
TWI79G0512 Tripterygium wilfordii
unitig_744.g24285 Utricularia gibba
unitig_899.g14429 Utricularia gibba
vmacro00457 Vaccinium macrocarpon
vmacro16358 Vaccinium macrocarpon
VMungo0720G1291 Vigna mungo
VMungo1166G0001 Vigna mungo
VMungo1215G2569 Vigna mungo
VMungo1309G1393 Vigna mungo
Zm00001eb152270 Zea mays
Zm00001eb331610 Zea mays

User provided reference genes

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