Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p31650 Brassica napus
A03p10470 Brassica napus
A09p17970 Brassica napus
A10p18780 Brassica napus
Aa31LG1G13480 Aethionema arabicum
Aa31LG4G13540 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1257 Anthoceros agrestis
Actinidia30221 Actinidia chinensis
Actinidia39660 Actinidia chinensis
AL5G21890 Arabidopsis lyrata
AL6G32900 Arabidopsis lyrata
Aqoxy7G01038 Aquilegia oxysepala
Aqoxy7G02919 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8GXM4F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GLDH4J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QE00FV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S73L53 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SD7R6J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V7S84L Arachis hypogaea
AT3G43850 Arabidopsis thaliana
AT5G21940 Arabidopsis thaliana
ATR0580G260 Amborella trichopoda
ATR0598G330 Amborella trichopoda
Atru.chr7.1837 Acer truncatum
AUR62009073 Chenopodium quinoa
AUR62020594 Chenopodium quinoa
AUR62044015 Chenopodium quinoa
BcaB01g04754 Brassica carinata
BcaB02g10771 Brassica carinata
BcaB05g22762 Brassica carinata
BcaB07g31174 Brassica carinata
BcaB08g36465 Brassica carinata
BcaB08g36467 Brassica carinata
BcaC01g06619 Brassica carinata
BcaC02g10043 Brassica carinata
BcaC03g13845 Brassica carinata
BcaC04g19535 Brassica carinata
BcaC04g22180 Brassica carinata
BcaC09g49292 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00990 Brassica napus
BolC1t04003H Brassica oleracea
BolC2t07119H Brassica oleracea
BolC3t13675H Brassica oleracea
BolC4t24926H Brassica oleracea
BolC9t55157H Brassica oleracea
BolC9t58340H Brassica oleracea
BraA01t03294Z Brassica rapa
BraA02t05628Z Brassica rapa
BraA03t10359Z Brassica rapa
BraA09t37431Z Brassica rapa
BraA10t43958Z Brassica rapa
C01p40500 Brassica napus
C03p12050 Brassica napus
C04p33580 Brassica napus
C09p22390 Brassica napus
C09p54800 Brassica napus
CANSAT25G2850 Cannabis sativa
CANSAT56G1230 Cannabis sativa
CARHR150370 Cardamine hirsuta
CARHR191590 Cardamine hirsuta
Carub.0005s0964 Capsella rubella
Carub.0006s1958 Capsella rubella
Ca_13116_v3 Cicer arietinum L.
Ca_15830_v3 Cicer arietinum L.
Ca_21323_v3 Cicer arietinum L.
Cc06_g12170 Coffea canephora
Cc08_g01070 Coffea canephora
CDE04G2528 Ceratophyllum demersum
CDE05G3576 Ceratophyllum demersum
CDE06G0156 Ceratophyllum demersum
CDE06G0466 Ceratophyllum demersum
CDE07G1514 Ceratophyllum demersum
Cfa002989 Carpinus fangiana
Cfa017864 Carpinus fangiana
Ciclev10008999m.g Citrus clementina
Ciclev10009592m.g Citrus clementina
Ciclev10024347m.g Citrus clementina
CiPaw.03G206500 Carya illinoinensis
CiPaw.04G143200 Carya illinoinensis
ClCG05G015790 Citrullus lanatus
ClCG08G009780 Citrullus lanatus
COL.COLO4_18098 Corchorus olitorius
COL.COLO4_21151 Corchorus olitorius
Cpa.g.sc126.12 Carica papaya
Cpa.g.sc28.40 Carica papaya
CsaV3_4G036090 Cucumis sativus L.
CsaV3_6G031910 Cucumis sativus L.
DCAR_003719 Daucus carota
Dinv25559 Davidia involucrata
Dinv42393 Davidia involucrata
Duzib150G0040 Durio zibethinus
Duzib150G0522 Durio zibethinus
Duzib168G0434 Durio zibethinus
Duzib168G0700 Durio zibethinus
Duzib187G0542 Durio zibethinus
Duzib187G0643 Durio zibethinus
ECA236G2407 Erigeron canadensis
ECA236G3225 Erigeron canadensis
ECA240G3215 Erigeron canadensis
EL10Ac2g03763 Beta vulgaris
Eucgr.C00733 Eucalyptus grandis
Eucgr.G00010 Eucalyptus grandis
Eucgr.L01062 Eucalyptus grandis
Eucgr.L02957 Eucalyptus grandis
FAN19G2477 Fragaria x ananassa
FAN20G2770 Fragaria x ananassa
FAN23G0242 Fragaria x ananassa
FAN24G0235 Fragaria x ananassa
FAN26G2408 Fragaria x ananassa
FAN26G3160 Fragaria x ananassa
FAN27G0989 Fragaria x ananassa
FAN28G0571 Fragaria x ananassa
FvH4_1g08640 Fragaria vesca
FvH4_2g30890 Fragaria vesca
Glyma.04G056500 Glycine max
Glyma.06G056600 Glycine max
Glyma.13G110500 Glycine max
Glyma.14G098200 Glycine max
Glyma.17G049200 Glycine max
Glyma.17G226500 Glycine max
Gohir.A05G033650 Gossypium hirsutum
Gohir.A05G033800 Gossypium hirsutum
Gohir.A05G038300 Gossypium hirsutum
Gohir.A06G079800 Gossypium hirsutum
Gohir.A07G015000 Gossypium hirsutum
Gohir.A07G019200 Gossypium hirsutum
Gohir.D05G035066 Gossypium hirsutum
Gohir.D05G035200 Gossypium hirsutum
Gohir.D05G039800 Gossypium hirsutum
Gohir.D05G039900 Gossypium hirsutum
Gohir.D06G079400 Gossypium hirsutum
Gohir.D07G014700 Gossypium hirsutum
Gohir.D07G019000 Gossypium hirsutum
Gorai.001G015500 Gossypium raimondii
Gorai.001G019700 Gossypium raimondii
Gorai.009G035600 Gossypium raimondii
Gorai.009G035700 Gossypium raimondii
Gorai.009G040300 Gossypium raimondii
Gorai.010G092500 Gossypium raimondii
GSVIVG01015083001 Vitis vinifera
HanXRQChr03g0065681 Helianthus annuus
HanXRQChr04g0126021 Helianthus annuus
HanXRQChr12g0354351 Helianthus annuus
Haze_18306 Corylus avellana
Haze_26012 Corylus avellana
Hma1.2p1_0169F.1_g074530 Hydrangea macrophylla
Hma1.2p1_0179F.1_g079530 Hydrangea macrophylla
HPP92_010298 Vanilla planifolia
HPP92_015829 Vanilla planifolia
HPP92_016200 Vanilla planifolia
HPP92_028260 Vanilla planifolia
Hund03294 Selenicereus undatus
Hund19411 Selenicereus undatus
Lalb_Chr08g0244771 Lupinus albus
Lalb_Chr11g0063351 Lupinus albus
Lalb_Chr12g0200151 Lupinus albus
Lalb_Chr14g0366431 Lupinus albus
Lj1g0009724 Lotus japonicus
Lj4A912T26 Lonicera japonica
Lj4g0014317 Lotus japonicus
Lj5g0016863 Lotus japonicus
Lsat_1_v5_gn_5_140720 Lactuca sativa
Lsat_1_v5_gn_7_58260 Lactuca sativa
Lsat_1_v5_gn_8_70600 Lactuca sativa
Lsat_1_v5_gn_8_86441 Lactuca sativa
Manes.03G053700 Manihot esculenta
Manes.16G086200 Manihot esculenta
Manes.16G086300 Manihot esculenta
Manes.16G095300 Manihot esculenta
Mapoly0169s0007 Marchantia polymorpha
MBI13_g12064_MAGBIO Magnolia biondii
MBI13_g36258_MAGBIO Magnolia biondii
MBI13_g42822_MAGBIO Magnolia biondii
MBI16_g09343_MAGBIO Magnolia biondii
MBI19_g10230_MAGBIO Magnolia biondii
MBI19_g43891_MAGBIO Magnolia biondii
MBI19_g44267_MAGBIO Magnolia biondii
MD02G1091300 Malus domestica
MD08G1072700 Malus domestica
MD15G1049100 Malus domestica
MD15G1217500 Malus domestica
Medtr1g015650 Medicago truncatula
Medtr3g105210 Medicago truncatula
Medtr4g125330 Medicago truncatula
MELO3C011491.2 Cucumis melo
MELO3C016917.2 Cucumis melo
Migut.A00067 Erythranthe guttata
Migut.E01783 Erythranthe guttata
Migut.J00926 Erythranthe guttata
Migut.L01566 Erythranthe guttata
MSTRG.10510 Avicennia marina
MSTRG.11633 Avicennia marina
MSTRG.14086 Avicennia marina
MSTRG.1709 Avicennia marina
Nitab4.5_0000024g0200 Nicotiana tabacum
Nitab4.5_0000073g0150 Nicotiana tabacum
Nitab4.5_0000446g0060 Nicotiana tabacum
Nitab4.5_0003042g0010 Nicotiana tabacum
Nitab4.5_0026719g0010 Nicotiana tabacum
Nn8g38647 Nelumbo nucifera
Oeu003969.1 Olea europaea
Oeu010312.1 Olea europaea
Oeu063420.2 Olea europaea
Os02g0778700 Oryza sativa ssp. japonica
Os06g0203700 Oryza sativa ssp. japonica
Os08g0458200 Oryza sativa ssp. japonica
Os08g0516900 Oryza sativa ssp. japonica
Os09g0499000 Oryza sativa ssp. japonica
Peaxi162Scf00127g01910 Petunia axillaris
Peaxi162Scf00486g00045 Petunia axillaris
Peaxi162Scf00554g00919 Petunia axillaris
PGSC0003DMG400005597 Solanum tuberosum
PGSC0003DMG400013007 Solanum tuberosum
PGSC0003DMG400024395 Solanum tuberosum
Phvul.001G037900 Phaseolus vulgaris
Phvul.003G130700 Phaseolus vulgaris
Potri.006G219800 Populus trichocarpa
Potri.018G048100 Populus trichocarpa
Pp3c15_22000 Physcomitrium patens
Pp3c9_17320 Physcomitrium patens
Prupe.1G403400 Prunus persica
Prupe.7G199000 Prunus persica
Psat4g018000 Pisum sativum
Psat5g030080 Pisum sativum
Psat6g021760 Pisum sativum
PSO135G0093 Papaver somniferum
PSO724G0250 Papaver somniferum
QL02p017163 Quercus lobata
QL11p000753 Quercus lobata
RcHm_v2.0_Chr1g0322321 Rosa chinensis
RcHm_v2.0_Chr2g0094921 Rosa chinensis
RcHm_v2.0_Chr3g0491201 Rosa chinensis
RcHm_v2.0_Chr4g0419681 Rosa chinensis
RcHm_v2.0_Chr6g0311951 Rosa chinensis
Rhsim03G0227600 Rhododendron simsii
Sabra06G0169700 Salix brachista
Sabra18G0046100 Salix brachista
SalBow4G0745 Salvia bowleyana
SalBow6G4243 Salvia bowleyana
Sc06g0001140 Simmondsia chinensis
Sc18g0002550 Simmondsia chinensis
Sed0009145 Sechium edule
Sed0016963 Sechium edule
Sed0023350 Sechium edule
SGA_v2.0_scaffold163G37996 Striga asiatica
SGA_v2.0_scaffold21G09488 Striga asiatica
SGA_v2.0_scaffold385G50446 Striga asiatica
SMO137G0004 Selaginella moellendorffii
SMO196G0045 Selaginella moellendorffii
Solyc05g025900.3 Solanum lycopersicum
Solyc07g041830.4 Solanum lycopersicum
Solyc08g061490.3 Solanum lycopersicum
Sopen05g021410 Solanum pennellii
Sopen07g021290 Solanum pennellii
Sopen08g016830 Solanum pennellii
Sp5g17360 Schrenkiella parvula
Sp6g23250 Schrenkiella parvula
TAR383G0971 Trochodendron aralioides
TAR624G0910 Trochodendron aralioides
TAR626G1645 Trochodendron aralioides
TAR636G1796 Trochodendron aralioides
THA.LOC104810954 Tarenaya hassleriana
THA.LOC104815089 Tarenaya hassleriana
Thecc.09G064500 Theobroma cacao
Thecc.09G076900 Theobroma cacao
Thhalv10014420m.g Eutrema salsugineum
TPR.G12555 Trifolium pratense
TPR.G13173 Trifolium pratense
TPR.G3512 Trifolium pratense
TPR.G595 Trifolium pratense
TWI32G0832 Tripterygium wilfordii
TWI34G1691 Tripterygium wilfordii
TWI63G1697 Tripterygium wilfordii
unitig_578.g16407 Utricularia gibba
unitig_748.g7539 Utricularia gibba
unitig_8.g4685 Utricularia gibba
vmacro06341 Vaccinium macrocarpon
vmacro17202 Vaccinium macrocarpon
VMungo0647G0789 Vigna mungo
VMungo1215G3089 Vigna mungo
Zm00001eb035860 Zea mays
Zm00001eb102210 Zea mays
Zm00001eb110160 Zea mays
Zm00001eb174750 Zea mays
Zm00001eb193120 Zea mays
Zm00001eb256950 Zea mays
Zm00001eb278630 Zea mays
Zm00001eb317350 Zea mays

User provided reference genes

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