Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p21850 Brassica napus
A05p39540 Brassica napus
A07p19240 Brassica napus
Aa31LG3G1950 Aethionema arabicum
Aa31LG5G7420 Aethionema arabicum
Actinidia26449 Actinidia chinensis
Actinidia37215 Actinidia chinensis
Ah.08g219140 Amaranthus hybridus
AL3G20630 Arabidopsis lyrata
AL4G23310 Arabidopsis lyrata
Aqoxy4G02967 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4PJH6V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.700R0F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8TSI1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9F3TVY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9XV86M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C96M7R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U8V305 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W1F8YE Arachis hypogaea
AT2G28780 Arabidopsis thaliana
AT3G09450 Arabidopsis thaliana
ATR0559G166 Amborella trichopoda
ATR0559G229 Amborella trichopoda
ATR0661G002 Amborella trichopoda
Atru.chr1.787 Acer truncatum
Atru.chr3.3844 Acer truncatum
Atru.chr3.3845 Acer truncatum
Atru.chr8.1937 Acer truncatum
AUR62001818 Chenopodium quinoa
AUR62009604 Chenopodium quinoa
BcaB02g10201 Brassica carinata
BcaB06g28248 Brassica carinata
BcaC02g08139 Brassica carinata
BcaC02g11009 Brassica carinata
BcaC05g29674 Brassica carinata
BolC4t23743H Brassica oleracea
BolC4t27322H Brassica oleracea
BolC5t34507H Brassica oleracea
BraA04t17751Z Brassica rapa
BraA05t22735Z Brassica rapa
BraA07t29633Z Brassica rapa
C04p22230 Brassica napus
C04p57960 Brassica napus
C05p58570 Brassica napus
CAN.G1362.1 Capsicum annuum
CAN.G394.45 Capsicum annuum
CAN.G502.1 Capsicum annuum
CAN.G661.6 Capsicum annuum
CAN.G97.42 Capsicum annuum
CANSAT54G0244 Cannabis sativa
CARHR083860 Cardamine hirsuta
CARHR121900 Cardamine hirsuta
Carub.0003s0855 Capsella rubella
Carub.0004s0977 Capsella rubella
Ca_01335_v3 Cicer arietinum L.
Ca_08776_v3 Cicer arietinum L.
Ca_08777_v3 Cicer arietinum L.
Ca_16317_v3 Cicer arietinum L.
CBR_g12469 Chara braunii
Cc01_g12590 Coffea canephora
Cc06_g02820 Coffea canephora
Cc08_g08670 Coffea canephora
Cc08_g08680 Coffea canephora
Cfa011471 Carpinus fangiana
Cfa011472 Carpinus fangiana
Cfa017406 Carpinus fangiana
Cfa017407 Carpinus fangiana
Cfa017408 Carpinus fangiana
Ciclev10011084m.g Citrus clementina
Ciclev10030119m.g Citrus clementina
CiPaw.10G144500 Carya illinoinensis
CiPaw.13G097200 Carya illinoinensis
CiPaw.14G070500 Carya illinoinensis
ClCG03G001680 Citrullus lanatus
ClCG03G001690 Citrullus lanatus
ClCG04G008310 Citrullus lanatus
COL.COLO4_14831 Corchorus olitorius
COL.COLO4_14833 Corchorus olitorius
COL.COLO4_18477 Corchorus olitorius
Cpa.g.sc190.8 Carica papaya
CsaV3_1G033960 Cucumis sativus L.
CsaV3_1G033980 Cucumis sativus L.
CsaV3_4G024830 Cucumis sativus L.
CSS0019386 Camellia sinensis var. sinensis
CSS0022593 Camellia sinensis var. sinensis
DCAR_005311 Daucus carota
DCAR_014842 Daucus carota
DCAR_017876 Daucus carota
Dinv01559 Davidia involucrata
Dinv17872 Davidia involucrata
Dinv35621 Davidia involucrata
Dinv37191 Davidia involucrata
Duzib093G0306 Durio zibethinus
Duzib168G1042 Durio zibethinus
Duzib170G1002 Durio zibethinus
ECA247G1348 Erigeron canadensis
ECA247G2148 Erigeron canadensis
EL10Ac7g15983 Beta vulgaris
Eucgr.B02385 Eucalyptus grandis
Eucgr.K03147 Eucalyptus grandis
FAN02G2260 Fragaria x ananassa
FAN05G3099 Fragaria x ananassa
FAN05G3854 Fragaria x ananassa
FAN09G0883 Fragaria x ananassa
FAN09G2545 Fragaria x ananassa
FAN11G0193 Fragaria x ananassa
FAN11G3448 Fragaria x ananassa
FAN14G1112 Fragaria x ananassa
FAN14G5713 Fragaria x ananassa
FAN16G1574 Fragaria x ananassa
FAN21G2655 Fragaria x ananassa
FAN25G1071 Fragaria x ananassa
FvH4_3g35560 Fragaria vesca
FvH4_3g35590 Fragaria vesca
FvH4_6g14110 Fragaria vesca
FvH4_6g14240 Fragaria vesca
Glyma.03G171200 Glycine max
Glyma.13G334600 Glycine max
Gohir.A01G223500 Gossypium hirsutum
Gohir.A07G096300 Gossypium hirsutum
Gohir.D01G212700 Gossypium hirsutum
Gohir.D07G100700 Gossypium hirsutum
Gorai.001G108600 Gossypium raimondii
Gorai.002G258600 Gossypium raimondii
Gorai.002G258700 Gossypium raimondii
GSVIVG01025002001 Vitis vinifera
GSVIVG01034199001 Vitis vinifera
HanXRQChr04g0107041 Helianthus annuus
HanXRQChr08g0231731 Helianthus annuus
HanXRQChr10g0286791 Helianthus annuus
Haze_20760 Corylus avellana
Haze_24058 Corylus avellana
Hund04984 Selenicereus undatus
Lalb_Chr01g0019301 Lupinus albus
Lalb_Chr25g0289581 Lupinus albus
Lalb_Chr25g0289591 Lupinus albus
Lj1A157T39 Lonicera japonica
Lj1C157T1 Lonicera japonica
Lj1g0008459 Lotus japonicus
Lj2A98T46 Lonicera japonica
Lj2C4G7 Lonicera japonica
Lj3g0011440 Lotus japonicus
Lj3g0020748 Lotus japonicus
Lsat_1_v5_gn_1_120601 Lactuca sativa
Lsat_1_v5_gn_9_18020 Lactuca sativa
Manes.11G132400 Manihot esculenta
Mapoly0005s0035 Marchantia polymorpha
Mapoly0039s0105 Marchantia polymorpha
Mapoly0047s0049 Marchantia polymorpha
Mapoly0047s0051 Marchantia polymorpha
Mapoly0055s0015 Marchantia polymorpha
Mapoly0183s0021 Marchantia polymorpha
MBI14_g11681_MAGBIO Magnolia biondii
MBI14_g11682_MAGBIO Magnolia biondii
MCO04G535 Micromonas commoda
MD03G1096700 Malus domestica
MD04G1122800 Malus domestica
MD04G1123800 Malus domestica
MD04G1125300 Malus domestica
MD04G1125400 Malus domestica
MD11G1142900 Malus domestica
MD11G1143000 Malus domestica
MD11G1143100 Malus domestica
MD12G1139000 Malus domestica
MD12G1140100 Malus domestica
MD12G1140200 Malus domestica
MD12G1140300 Malus domestica
Medtr2g096670 Medicago truncatula
Medtr7g063050 Medicago truncatula
Medtr7g073075 Medicago truncatula
Medtr7g099710 Medicago truncatula
MELO3C003118.2 Cucumis melo
MELO3C020655.2 Cucumis melo
MELO3C020660.2 Cucumis melo
MELO3C029482.2 Cucumis melo
MELO3C031793.2 Cucumis melo
Migut.A00597 Erythranthe guttata
Migut.J00344 Erythranthe guttata
Migut.J00345 Erythranthe guttata
Migut.L01934 Erythranthe guttata
MSTRG.10267 Avicennia marina
MSTRG.11900 Avicennia marina
Nitab4.5_0000202g0210 Nicotiana tabacum
Nitab4.5_0000216g0130 Nicotiana tabacum
Nitab4.5_0000610g0020 Nicotiana tabacum
Nitab4.5_0000610g0090 Nicotiana tabacum
Nitab4.5_0000652g0150 Nicotiana tabacum
Nitab4.5_0000761g0040 Nicotiana tabacum
Nitab4.5_0001304g0030 Nicotiana tabacum
Nitab4.5_0004091g0050 Nicotiana tabacum
Nitab4.5_0004912g0090 Nicotiana tabacum
Nitab4.5_0005251g0010 Nicotiana tabacum
Nitab4.5_0007816g0010 Nicotiana tabacum
Nitab4.5_0015401g0020 Nicotiana tabacum
Nn2g10412 Nelumbo nucifera
Oeu010345.1 Olea europaea
Oeu017095.1 Olea europaea
Oeu049227.1 Olea europaea
Oeu049228.1 Olea europaea
Os05g0492300 Oryza sativa ssp. japonica
Os11g0100300 Oryza sativa ssp. japonica
Os12g0100200 Oryza sativa ssp. japonica
Peaxi162Scf00009g02017 Petunia axillaris
Peaxi162Scf00009g02023 Petunia axillaris
Peaxi162Scf00009g02110 Petunia axillaris
Peaxi162Scf00094g01919 Petunia axillaris
Peaxi162Scf00165g01846 Petunia axillaris
Peaxi162Scf00406g00316 Petunia axillaris
Peaxi162Scf00679g00213 Petunia axillaris
PGR004G1690 Punica granatum
PGR102G1125 Punica granatum
PGSC0003DMG400000403 Solanum tuberosum
PGSC0003DMG400008846 Solanum tuberosum
PGSC0003DMG400011060 Solanum tuberosum
PGSC0003DMG400030403 Solanum tuberosum
PGSC0003DMG400037745 Solanum tuberosum
PGSC0003DMG400038189 Solanum tuberosum
Phvul.001G169100 Phaseolus vulgaris
Phvul.L004143 Phaseolus vulgaris
Potri.001G237300 Populus trichocarpa
Potri.006G082000 Populus trichocarpa
Potri.009G028600 Populus trichocarpa
Prupe.6G081000 Prunus persica
Prupe.6G250900 Prunus persica
Prupe.6G252300 Prunus persica
Psat0s5381g0120 Pisum sativum
Psat3g049560 Pisum sativum
Psat5g282800 Pisum sativum
PSO339G0575 Papaver somniferum
PSO339G1204 Papaver somniferum
PSO384G1043 Papaver somniferum
PSO384G1267 Papaver somniferum
QL07p031156 Quercus lobata
QL07p031174 Quercus lobata
QL07p047879 Quercus lobata
QL07p047888 Quercus lobata
RcHm_v2.0_Chr3g0467011 Rosa chinensis
RcHm_v2.0_Chr3g0467201 Rosa chinensis
RcHm_v2.0_Chr5g0063771 Rosa chinensis
Rhsim05G0189900 Rhododendron simsii
Rhsim05G0190000 Rhododendron simsii
Sabra06G0061900 Salix brachista
Sabra09G0019800 Salix brachista
Sabra16G0143000 Salix brachista
SalBow1G0516 Salvia bowleyana
SalBow1G1614 Salvia bowleyana
SalBow4G0648 Salvia bowleyana
Sc01g0004230 Simmondsia chinensis
Sed0003656 Sechium edule
Sed0014844 Sechium edule
Sed0020419 Sechium edule
SEGI_09335 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33804 Striga asiatica
SGA_v2.0_scaffold5286G54623 Striga asiatica
SGA_v2.0_scaffold94G28578 Striga asiatica
SMO199G0110 Selaginella moellendorffii
SMO340G0081 Selaginella moellendorffii
SMO340G0115 Selaginella moellendorffii
SMO361G0017 Selaginella moellendorffii
Solyc06g075970.4 Solanum lycopersicum
Solyc09g010570.1 Solanum lycopersicum
Solyc10g084720.1 Solanum lycopersicum
Solyc11g066140.2 Solanum lycopersicum
Sopen06g032390 Solanum pennellii
Sopen09g005290 Solanum pennellii
Sopen10g034160 Solanum pennellii
Sopen11g025910 Solanum pennellii
Sp3g07830 Schrenkiella parvula
Sp4g11620 Schrenkiella parvula
TAR633G1124 Trochodendron aralioides
THA.LOC104806054 Tarenaya hassleriana
THA.LOC104816079 Tarenaya hassleriana
THA.LOC104816285 Tarenaya hassleriana
THA.LOC104826334 Tarenaya hassleriana
Thecc.05G042100 Theobroma cacao
Thecc.09G325200 Theobroma cacao
Thhalv10016268m.g Eutrema salsugineum
Thhalv10020118m.g Eutrema salsugineum
TPR.G15254 Trifolium pratense
TPR.G34277 Trifolium pratense
TPR.G35242 Trifolium pratense
TWI31G0008 Tripterygium wilfordii
TWI53G1334 Tripterygium wilfordii
vmacro20135 Vaccinium macrocarpon
VMungo1080G0140 Vigna mungo
VMungo1383G0253 Vigna mungo
VMungo1383G1831 Vigna mungo
Zm00001eb163090 Zea mays

User provided reference genes

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