Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p24220 Brassica napus
A03p32010 Brassica napus
A09p00320 Brassica napus
Aa31LG5G250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3286 Anthoceros agrestis
Actinidia25376 Actinidia chinensis
Actinidia31807 Actinidia chinensis
Actinidia32925 Actinidia chinensis
Actinidia38292 Actinidia chinensis
Actinidia38293 Actinidia chinensis
Ah.05g176100 Amaranthus hybridus
AL6G52700 Arabidopsis lyrata
Aqoxy7G00436 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.07L2J4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1A5FNX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3XC1JS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4C22T2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GZ3C1E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HEER1U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JM8ET5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JP3BZ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VW3TQU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XEUR17 Arachis hypogaea
AT4G00755 Arabidopsis thaliana
ATR0757G201 Amborella trichopoda
Atru.chr5.410 Acer truncatum
AUR62004297 Chenopodium quinoa
AUR62022745 Chenopodium quinoa
BcaB01g02156 Brassica carinata
BcaB01g02187 Brassica carinata
BcaB01g02273 Brassica carinata
BcaB01g02274 Brassica carinata
BcaB01g02276 Brassica carinata
BcaB01g02277 Brassica carinata
BcaC03g16049 Brassica carinata
BcaC04g24148 Brassica carinata
BolC2t09826H Brassica oleracea
BolC3t16175H Brassica oleracea
BolC9t52994H Brassica oleracea
BraA02t07412Z Brassica rapa
BraA03t12373Z Brassica rapa
BraA09t35729Z Brassica rapa
C02p38120 Brassica napus
C03p39030 Brassica napus
C09p00600 Brassica napus
CAN.G116.23 Capsicum annuum
CAN.G170.40 Capsicum annuum
CAN.G170.41 Capsicum annuum
CAN.G170.42 Capsicum annuum
CAN.G170.44 Capsicum annuum
CAN.G170.45 Capsicum annuum
CAN.G170.46 Capsicum annuum
CAN.G913.14 Capsicum annuum
CANSAT21G0559 Cannabis sativa
CANSAT21G1167 Cannabis sativa
CANSAT56G0506 Cannabis sativa
CARHR248940 Cardamine hirsuta
Carub.0006s3645 Capsella rubella
Ca_07860_v3 Cicer arietinum L.
Ca_07861_v3 Cicer arietinum L.
Ca_29715_v3 Cicer arietinum L.
Ca_29716_v3 Cicer arietinum L.
CBR_g18757 Chara braunii
CBR_g6393 Chara braunii
Cc00_g13230 Coffea canephora
Cc02_g03370 Coffea canephora
Cc02_g37310 Coffea canephora
Cc06_g12290 Coffea canephora
CDE11G1135 Ceratophyllum demersum
Cfa004189 Carpinus fangiana
Cfa004190 Carpinus fangiana
Cfa008284 Carpinus fangiana
Ciclev10020777m.g Citrus clementina
CiPaw.01G054300 Carya illinoinensis
CiPaw.01G054500 Carya illinoinensis
CiPaw.02G025200 Carya illinoinensis
CiPaw.02G025400 Carya illinoinensis
CiPaw.03G102900 Carya illinoinensis
CiPaw.04G067100 Carya illinoinensis
ClCG00G005780 Citrullus lanatus
ClCG01G005610 Citrullus lanatus
ClCG01G005620 Citrullus lanatus
ClCG05G001870 Citrullus lanatus
COL.COLO4_12618 Corchorus olitorius
COL.COLO4_14268 Corchorus olitorius
Cpa.g.sc107.11 Carica papaya
Cpa.g.sc18.191 Carica papaya
Cre11.g468383 Chlamydomonas reinhardtii
CsaV3_3G009260 Cucumis sativus L.
CsaV3_5G005840 Cucumis sativus L.
CSS0001839 Camellia sinensis var. sinensis
CSS0001963 Camellia sinensis var. sinensis
CSS0010081 Camellia sinensis var. sinensis
CSS0022149 Camellia sinensis var. sinensis
DCAR_014599 Daucus carota
DCAR_025166 Daucus carota
Dinv28475 Davidia involucrata
Dinv35182 Davidia involucrata
Dinv43762 Davidia involucrata
Duzib133G0355 Durio zibethinus
Duzib138G0352 Durio zibethinus
Duzib268G1167 Durio zibethinus
ECA234G1136 Erigeron canadensis
ECA234G3999 Erigeron canadensis
ECA238G2784 Erigeron canadensis
ECA240G2552 Erigeron canadensis
EL10Ac1g00985 Beta vulgaris
Eucgr.A02811 Eucalyptus grandis
Eucgr.D02242 Eucalyptus grandis
FAN01G0175 Fragaria x ananassa
FAN03G0709 Fragaria x ananassa
FAN06G3531 Fragaria x ananassa
FAN06G4335 Fragaria x ananassa
FAN10G0644 Fragaria x ananassa
FAN10G1707 Fragaria x ananassa
FvH4_7g13210 Fragaria vesca
Glyma.09G145800 Glycine max
Glyma.09G264800 Glycine max
Glyma.16G197900 Glycine max
Glyma.18G227100 Glycine max
Gohir.A02G048902 Gossypium hirsutum
Gohir.A07G144100 Gossypium hirsutum
Gohir.A11G085300 Gossypium hirsutum
Gohir.A12G260300 Gossypium hirsutum
Gohir.D07G150000 Gossypium hirsutum
Gohir.D11G089400 Gossypium hirsutum
Gohir.D12G261100 Gossypium hirsutum
Gorai.001G171700 Gossypium raimondii
Gorai.007G095400 Gossypium raimondii
Gorai.008G279900 Gossypium raimondii
GSVIVG01010615001 Vitis vinifera
GSVIVG01027515001 Vitis vinifera
HanXRQChr14g0462091 Helianthus annuus
HanXRQChr15g0471061 Helianthus annuus
HanXRQChr16g0523561 Helianthus annuus
HanXRQChr16g0523571 Helianthus annuus
HanXRQChr17g0556991 Helianthus annuus
HanXRQChr17g0557001 Helianthus annuus
HanXRQChr17g0560021 Helianthus annuus
HanXRQChr17g0560031 Helianthus annuus
HanXRQChr17g0560041 Helianthus annuus
Haze_13751 Corylus avellana
Haze_15218 Corylus avellana
Haze_15219 Corylus avellana
Hma1.2p1_0033F.1_g020530 Hydrangea macrophylla
Hma1.2p1_0033F.1_g020540 Hydrangea macrophylla
Hma1.2p1_0270F.1_g108400 Hydrangea macrophylla
HPP92_014443 Vanilla planifolia
Hund16960 Selenicereus undatus
Hund27321 Selenicereus undatus
Lalb_Chr01g0009151 Lupinus albus
Lalb_Chr01g0021181 Lupinus albus
Lj1g0009359 Lotus japonicus
Lj2g0027786 Lotus japonicus
Lj8A28G33 Lonicera japonica
Lj9A577G57 Lonicera japonica
Lsat_1_v5_gn_2_133080 Lactuca sativa
Lsat_1_v5_gn_4_38120 Lactuca sativa
Manes.01G261800 Manihot esculenta
Manes.05G039700 Manihot esculenta
Manes.06G144200 Manihot esculenta
Mapoly0132s0014 Marchantia polymorpha
MBI04_g02073_MAGBIO Magnolia biondii
MD01G1051100 Malus domestica
MD07G1128000 Malus domestica
Medtr0032s0050 Medicago truncatula
Medtr0032s0060 Medicago truncatula
Medtr6g042460 Medicago truncatula
Medtr7g076190 Medicago truncatula
MELO3C005372.2 Cucumis melo
MELO3C006146.2 Cucumis melo
Migut.B01681 Erythranthe guttata
Migut.B01696 Erythranthe guttata
Migut.B01697 Erythranthe guttata
Migut.F00371 Erythranthe guttata
MSTRG.106 Avicennia marina
MSTRG.17236 Avicennia marina
MSTRG.27135 Avicennia marina
MSTRG.28204 Avicennia marina
MSTRG.8759 Avicennia marina
Nitab4.5_0000134g0200 Nicotiana tabacum
Nitab4.5_0001083g0100 Nicotiana tabacum
Nitab4.5_0001559g0040 Nicotiana tabacum
Nitab4.5_0002080g0060 Nicotiana tabacum
Nitab4.5_0002718g0060 Nicotiana tabacum
Nitab4.5_0002718g0070 Nicotiana tabacum
Nitab4.5_0002784g0010 Nicotiana tabacum
Nitab4.5_0004550g0140 Nicotiana tabacum
Nn1g01369 Nelumbo nucifera
Nn6g34242 Nelumbo nucifera
Oeu004130.1 Olea europaea
Oeu022553.1 Olea europaea
Oeu038684.1 Olea europaea
Oeu038686.1 Olea europaea
Oeu038687.1 Olea europaea
Oeu059234.1 Olea europaea
Os03g0116800 Oryza sativa ssp. japonica
Os03g0861800 Oryza sativa ssp. japonica
Peaxi162Scf00021g00627 Petunia axillaris
Peaxi162Scf00233g00310 Petunia axillaris
Peaxi162Scf00915g00249 Petunia axillaris
PGR031G3094 Punica granatum
PGR042G1890 Punica granatum
PGSC0003DMG400010259 Solanum tuberosum
PGSC0003DMG400014314 Solanum tuberosum
PGSC0003DMG400027774 Solanum tuberosum
PGSC0003DMG400027776 Solanum tuberosum
Phvul.004G121200 Phaseolus vulgaris
Phvul.008G071900 Phaseolus vulgaris
Potri.002G153900 Populus trichocarpa
Potri.014G076200 Populus trichocarpa
Potri.014G076300 Populus trichocarpa
Pp3c14_19630 Physcomitrium patens
Pp3c17_15230 Physcomitrium patens
Pp3c2_30060 Physcomitrium patens
Prupe.2G156300 Prunus persica
Psat0s2826g0120 Pisum sativum
Psat3g113360 Pisum sativum
Psat7g197560 Pisum sativum
PSO063G6691 Papaver somniferum
PSO478G1244 Papaver somniferum
PSO478G2593 Papaver somniferum
PSO478G2620 Papaver somniferum
PSO478G3352 Papaver somniferum
PSO478G4254 Papaver somniferum
PSO782G0605 Papaver somniferum
PSO782G2835 Papaver somniferum
PSO782G4556 Papaver somniferum
PSO782G5079 Papaver somniferum
PSO782G5285 Papaver somniferum
PSO782G5720 Papaver somniferum
QL08p050497 Quercus lobata
QL08p050508 Quercus lobata
QL08p050523 Quercus lobata
QL09p014917 Quercus lobata
RcHm_v2.0_Chr1g0352351 Rosa chinensis
Rhsim09G0196600 Rhododendron simsii
Sabra02G0121900 Salix brachista
Sabra02G0122100 Salix brachista
Sabra14G0055900 Salix brachista
SalBow4G2461 Salvia bowleyana
Sc19g0001670 Simmondsia chinensis
Sc26g0001040 Simmondsia chinensis
Sed0005376 Sechium edule
Sed0005815 Sechium edule
Sed0013216 Sechium edule
SEGI_07806 Sequoiadendron giganteum
SEGI_12771 Sequoiadendron giganteum
SEGI_16563 Sequoiadendron giganteum
SEGI_26235 Sequoiadendron giganteum
SEGI_27971 Sequoiadendron giganteum
SEGI_36181 Sequoiadendron giganteum
SEGI_41060 Sequoiadendron giganteum
SGA_v2.0_scaffold153G37071 Striga asiatica
SGA_v2.0_scaffold95G28867 Striga asiatica
SHI13482 Sapria himalayana
SMO364G0625 Selaginella moellendorffii
Solyc01g091710.4 Solanum lycopersicum
Solyc01g091720.3 Solanum lycopersicum
Solyc03g026170.4 Solanum lycopersicum
Solyc10g017880.2 Solanum lycopersicum
Sopen01g037480 Solanum pennellii
Sopen01g037500 Solanum pennellii
Sopen03g005050 Solanum pennellii
Sopen10g006710 Solanum pennellii
Sp6g00750 Schrenkiella parvula
TAR374G1116 Trochodendron aralioides
TAR375G0035 Trochodendron aralioides
THA.LOC104814096 Tarenaya hassleriana
THA.LOC104823755 Tarenaya hassleriana
Thecc.01G367700 Theobroma cacao
Thecc.01G367900 Theobroma cacao
Thecc.03G171100 Theobroma cacao
Thhalv10028752m.g Eutrema salsugineum
TPR.G20871 Trifolium pratense
TPR.G25049 Trifolium pratense
TPR.G25058 Trifolium pratense
TPR.G25060 Trifolium pratense
TPR.G37831 Trifolium pratense
TWI59G0692 Tripterygium wilfordii
unitig_26.g9308 Utricularia gibba
unitig_749.g14357 Utricularia gibba
vmacro09855 Vaccinium macrocarpon
vmacro09856 Vaccinium macrocarpon
vmacro11339 Vaccinium macrocarpon
vmacro20278 Vaccinium macrocarpon
VMungo0464G2127 Vigna mungo
VMungo1383G3429 Vigna mungo
Zm00001eb001130 Zea mays

User provided reference genes

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