Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05590 Brassica napus
A09p47190 Brassica napus
Aa31LG5G23280 Aethionema arabicum
Aa31LG9G9990 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.693 Anthoceros agrestis
Actinidia01021 Actinidia chinensis
Actinidia13629 Actinidia chinensis
Actinidia31758 Actinidia chinensis
Ah.10g029690 Amaranthus hybridus
Ah.12g064730 Amaranthus hybridus
AL4G35900 Arabidopsis lyrata
AL5G35230 Arabidopsis lyrata
Aqoxy4G03319 Aquilegia oxysepala
Aqoxy7G04132 Aquilegia oxysepala
Aqoxy7G04134 Aquilegia oxysepala
Aqoxy7G04135 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7ZHB4F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D321TY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0GZ50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S8LDEV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SD95XD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V8N4SQ Arachis hypogaea
AT2G38630 Arabidopsis thaliana
AT3G54190 Arabidopsis thaliana
ATR0681G115 Amborella trichopoda
ATR1127G074 Amborella trichopoda
Atru.chr12.225 Acer truncatum
Atru.chr8.41 Acer truncatum
AUR62031671 Chenopodium quinoa
AUR62032554 Chenopodium quinoa
BcaB01g00211 Brassica carinata
BcaB02g07745 Brassica carinata
BcaB02g08477 Brassica carinata
BcaC01g05523 Brassica carinata
BcaC02g09089 Brassica carinata
BcaC07g39761 Brassica carinata
BolC4t25407H Brassica oleracea
BolC8t50547H Brassica oleracea
BraA04t16258Z Brassica rapa
BraA09t40180Z Brassica rapa
C03p25380 Brassica napus
C04p38320 Brassica napus
C08p29450 Brassica napus
CAN.G174.6 Capsicum annuum
CAN.G297.4 Capsicum annuum
CANSAT01G0725 Cannabis sativa
CANSAT56G1681 Cannabis sativa
CANSAT79G0003 Cannabis sativa
CARHR133300 Cardamine hirsuta
CARHR158710 Cardamine hirsuta
CARHR164090 Cardamine hirsuta
Carub.0004s2061 Capsella rubella
Carub.0005s2078 Capsella rubella
Ca_05545_v3 Cicer arietinum L.
Ca_07802_v3 Cicer arietinum L.
Ca_07815_v3 Cicer arietinum L.
Ca_16845_v3 Cicer arietinum L.
CBR_g31349 Chara braunii
Cc02_g05000 Coffea canephora
CDE06G0741 Ceratophyllum demersum
CDE07G0503 Ceratophyllum demersum
Cfa001176 Carpinus fangiana
Ciclev10011641m.g Citrus clementina
Ciclev10031365m.g Citrus clementina
Ciclev10033947m.g Citrus clementina
CiPaw.01G308200 Carya illinoinensis
CiPaw.02G199700 Carya illinoinensis
CiPaw.09G225000 Carya illinoinensis
ClCG04G006080 Citrullus lanatus
COL.COLO4_00147 Corchorus olitorius
COL.COLO4_07711 Corchorus olitorius
Cpa.g.sc19.32 Carica papaya
Cpa.g.sc60.32 Carica papaya
Cpa.g.sc60.34 Carica papaya
CsaV3_4G027480 Cucumis sativus L.
CSS0007288 Camellia sinensis var. sinensis
CSS0013041 Camellia sinensis var. sinensis
CSS0016330 Camellia sinensis var. sinensis
CSS0031210 Camellia sinensis var. sinensis
DCAR_014651 Daucus carota
DCAR_014652 Daucus carota
DCAR_018053 Daucus carota
DCAR_018054 Daucus carota
Dinv25377 Davidia involucrata
Dinv34516 Davidia involucrata
Duzib066G0007 Durio zibethinus
Duzib114G0547 Durio zibethinus
Duzib128G0373 Durio zibethinus
Duzib151G0346 Durio zibethinus
ECA232G3737 Erigeron canadensis
ECA233G3758 Erigeron canadensis
ECA247G0187 Erigeron canadensis
EL10Ac2g02697 Beta vulgaris
Eucgr.A00860 Eucalyptus grandis
Eucgr.G03173 Eucalyptus grandis
FAN01G1791 Fragaria x ananassa
FAN02G0393 Fragaria x ananassa
FAN03G1767 Fragaria x ananassa
FAN05G1171 Fragaria x ananassa
FAN06G1093 Fragaria x ananassa
FAN09G1600 Fragaria x ananassa
FAN10G1754 Fragaria x ananassa
FAN14G2315 Fragaria x ananassa
FvH4_6g09240 Fragaria vesca
FvH4_7g26350 Fragaria vesca
Glyma.02G220400 Glycine max
Glyma.04G224900 Glycine max
Glyma.06G139900 Glycine max
Glyma.06G141801 Glycine max
Glyma.09G270600 Glycine max
Glyma.09G270650 Glycine max
Glyma.09G270700 Glycine max
Glyma.14G187400 Glycine max
Glyma.18G219000 Glycine max
Gohir.A05G276600 Gossypium hirsutum
Gohir.A13G008700 Gossypium hirsutum
Gohir.D05G278300 Gossypium hirsutum
Gohir.D13G009400 Gossypium hirsutum
Gorai.009G291800 Gossypium raimondii
Gorai.013G010100 Gossypium raimondii
GSVIVG01029846001 Vitis vinifera
GSVIVG01032872001 Vitis vinifera
HanXRQChr03g0086891 Helianthus annuus
HanXRQChr05g0144221 Helianthus annuus
HanXRQChr05g0152031 Helianthus annuus
HanXRQChr09g0252421 Helianthus annuus
HanXRQChr10g0312101 Helianthus annuus
HanXRQChr14g0460991 Helianthus annuus
Haze_17384 Corylus avellana
Haze_21218 Corylus avellana
Hma1.2p1_0264F.1_g105740 Hydrangea macrophylla
HPP92_026311 Vanilla planifolia
Hund13423 Selenicereus undatus
Hund15776 Selenicereus undatus
Lalb_Chr08g0239351 Lupinus albus
Lalb_Chr11g0067591 Lupinus albus
Lalb_Chr17g0344751 Lupinus albus
Lalb_Chr17g0344761 Lupinus albus
Lalb_Chr23g0272091 Lupinus albus
Lj1A970G56 Lonicera japonica
Lj1g0000819 Lotus japonicus
Lj1g0023965 Lotus japonicus
Lj2A54T81 Lonicera japonica
Lj8C50G17 Lonicera japonica
Lsat_1_v5_gn_0_44961 Lactuca sativa
Lsat_1_v5_gn_2_127520 Lactuca sativa
Lsat_1_v5_gn_2_14861 Lactuca sativa
Lsat_1_v5_gn_4_103120 Lactuca sativa
Lsat_1_v5_gn_5_61741 Lactuca sativa
Lsat_1_v5_gn_5_68740 Lactuca sativa
Lsat_1_v5_gn_8_108421 Lactuca sativa
Lsat_1_v5_gn_8_10961 Lactuca sativa
Lsat_1_v5_gn_9_40060 Lactuca sativa
Lsat_1_v5_gn_9_60480 Lactuca sativa
Manes.08G167000 Manihot esculenta
Manes.09G120200 Manihot esculenta
Mapoly0009s0067 Marchantia polymorpha
MBI03_g33874_MAGBIO Magnolia biondii
MBI15_g05583_MAGBIO Magnolia biondii
MBI19_g38004_MAGBIO Magnolia biondii
MD01G1172600 Malus domestica
MD04G1179700 Malus domestica
MD07G1238900 Malus domestica
MD07G1248100 Malus domestica
MD12G1194800 Malus domestica
MD12G1194900 Malus domestica
Medtr3g093520 Medicago truncatula
Medtr4g102580 Medicago truncatula
Medtr4g102610 Medicago truncatula
Medtr5g068570 Medicago truncatula
Medtr7g074450 Medicago truncatula
MELO3C025272.2 Cucumis melo
Migut.F00559 Erythranthe guttata
Migut.F01220 Erythranthe guttata
MSTRG.152 Avicennia marina
MSTRG.27247 Avicennia marina
MSTRG.8868 Avicennia marina
Nitab4.5_0000071g0330 Nicotiana tabacum
Nitab4.5_0000103g0060 Nicotiana tabacum
Nitab4.5_0001130g0020 Nicotiana tabacum
Nitab4.5_0005479g0050 Nicotiana tabacum
Oeu001365.1 Olea europaea
Oeu008099.1 Olea europaea
Oeu017136.1 Olea europaea
Oeu025439.1 Olea europaea
Oeu044174.1 Olea europaea
Oeu045630.1 Olea europaea
Oeu059543.1 Olea europaea
Os01g0817800 Oryza sativa ssp. japonica
Os02g0159400 Oryza sativa ssp. japonica
Os05g0482600 Oryza sativa ssp. japonica
Os12g0498300 Oryza sativa ssp. japonica
Peaxi162Scf00073g02024 Petunia axillaris
Peaxi162Scf00304g00085 Petunia axillaris
PGR004G1541 Punica granatum
PGR004G2398 Punica granatum
PGR031G0734 Punica granatum
PGR044G1795 Punica granatum
PGSC0003DMG402005259 Solanum tuberosum
Phvul.008G078000 Phaseolus vulgaris
Phvul.008G187500 Phaseolus vulgaris
Phvul.009G041100 Phaseolus vulgaris
Potri.006G113000 Populus trichocarpa
Potri.013G091600 Populus trichocarpa
Potri.013G091700 Populus trichocarpa
Potri.013G091800 Populus trichocarpa
Potri.016G142600 Populus trichocarpa
Potri.019G064100 Populus trichocarpa
Pp3c14_20240 Physcomitrium patens
Pp3c17_18630 Physcomitrium patens
Pp3c1_29160 Physcomitrium patens
PRCOL_00001718 Prasinoderma coloniale
Prupe.2G267700 Prunus persica
Prupe.6G299700 Prunus persica
Psat2g060040 Pisum sativum
Psat3g113880 Pisum sativum
Psat4g123520 Pisum sativum
Psat5g070320 Pisum sativum
PSO339G5697 Papaver somniferum
PSO384G4808 Papaver somniferum
QL07p030538 Quercus lobata
QL07p031527 Quercus lobata
QL08p065393 Quercus lobata
RcHm_v2.0_Chr1g0321941 Rosa chinensis
RcHm_v2.0_Chr1g0336431 Rosa chinensis
RcHm_v2.0_Chr1g0372891 Rosa chinensis
RcHm_v2.0_Chr1g0381951 Rosa chinensis
RcHm_v2.0_Chr2g0159901 Rosa chinensis
RcHm_v2.0_Chr3g0459581 Rosa chinensis
RcHm_v2.0_Chr7g0227301 Rosa chinensis
Rhsim02G0102000 Rhododendron simsii
Rhsim03G0155000 Rhododendron simsii
Rhsim05G0234600 Rhododendron simsii
Rhsim09G0187500 Rhododendron simsii
Sabra04G0158600 Salix brachista
Sabra06G0087900 Salix brachista
Sabra19G0077300 Salix brachista
SalBow3G0313 Salvia bowleyana
Sc10g0003120 Simmondsia chinensis
Sc11g0006130 Simmondsia chinensis
Sed0003094 Sechium edule
Sed0010636 Sechium edule
SEGI_08118 Sequoiadendron giganteum
SEGI_17849 Sequoiadendron giganteum
SEGI_18279 Sequoiadendron giganteum
SEGI_22621 Sequoiadendron giganteum
SEGI_25679 Sequoiadendron giganteum
SEGI_35762 Sequoiadendron giganteum
SGA_v2.0_scaffold44G16612 Striga asiatica
SGA_v2.0_scaffold60G20870 Striga asiatica
SHI12963 Sapria himalayana
SMO367G0702 Selaginella moellendorffii
Solyc03g095260.3 Solanum lycopersicum
Solyc06g048480.3 Solanum lycopersicum
Sopen03g025260 Solanum pennellii
Sopen06g014630 Solanum pennellii
Sp4g20970 Schrenkiella parvula
Sp5g08210 Schrenkiella parvula
TAR365G0540 Trochodendron aralioides
TAR383G0064 Trochodendron aralioides
TAR624G1280 Trochodendron aralioides
TAR633G0686 Trochodendron aralioides
TAR636G0114 Trochodendron aralioides
THA.LOC104806289 Tarenaya hassleriana
Thecc.04G062700 Theobroma cacao
Thecc.10G188100 Theobroma cacao
Thhalv10010345m.g Eutrema salsugineum
Thhalv10016625m.g Eutrema salsugineum
TPR.G13967 Trifolium pratense
TPR.G24290 Trifolium pratense
TPR.G37680 Trifolium pratense
TPR.G5835 Trifolium pratense
TPR.G5837 Trifolium pratense
TWI53G1563 Tripterygium wilfordii
TWI74G0129 Tripterygium wilfordii
TWI77G0970 Tripterygium wilfordii
unitig_0.g2516 Utricularia gibba
unitig_578.g16612 Utricularia gibba
vmacro06871 Vaccinium macrocarpon
vmacro09944 Vaccinium macrocarpon
VMungo0647G2099 Vigna mungo
VMungo1309G1988 Vigna mungo
VMungo1383G1417 Vigna mungo
Zm00001eb138210 Zea mays
Zm00001eb257070 Zea mays
Zm00001eb262580 Zea mays
Zm00001eb290980 Zea mays
Zm00001eb352130 Zea mays
Zm00001eb409630 Zea mays

User provided reference genes

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