Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p28780 Brassica napus
A03p52190 Brassica napus
A03p52200 Brassica napus
A06p46810 Brassica napus
A06p47560 Brassica napus
Aa31LG5G3270 Aethionema arabicum
Aa31LG6G2340 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.765 Anthoceros agrestis
Actinidia30133 Actinidia chinensis
Actinidia33708 Actinidia chinensis
AL2G21040 Arabidopsis lyrata
AL7G34160 Arabidopsis lyrata
AL8G14400 Arabidopsis lyrata
AL8G14450 Arabidopsis lyrata
AL8G16090 Arabidopsis lyrata
Aqoxy1G01450 Aquilegia oxysepala
Aqoxy2G03742 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.I4Y26E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K7YURS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q8EGAM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YB8WP5 Arachis hypogaea
AT4G19880 Arabidopsis thaliana
AT5G44000 Arabidopsis thaliana
AT5G44990 Arabidopsis thaliana
AT5G45020 Arabidopsis thaliana
ATR0736G191 Amborella trichopoda
ATR0787G057 Amborella trichopoda
ATR1152G053 Amborella trichopoda
Atru.chr10.496 Acer truncatum
Atru.chr5.1821 Acer truncatum
AUR62008787 Chenopodium quinoa
AUR62025453 Chenopodium quinoa
AUR62033029 Chenopodium quinoa
AUR62033030 Chenopodium quinoa
AUR62040763 Chenopodium quinoa
AUR62040764 Chenopodium quinoa
BcaB07g30484 Brassica carinata
BcaC03g16717 Brassica carinata
BcaC06g30622 Brassica carinata
BcaC06g31577 Brassica carinata
BcaC06g31664 Brassica carinata
BcaC06g34494 Brassica carinata
BcaC06g34605 Brassica carinata
BcaNung02545 Brassica carinata
BolC2t10626H Brassica oleracea
BolC2t10634H Brassica oleracea
BolC7t43184H Brassica oleracea
BolC7t43319H Brassica oleracea
BolC7t45560H Brassica oleracea
BraA02t07910Z Brassica rapa
BraA03t14291Z Brassica rapa
BraA06t27553Z Brassica rapa
BraA06t27624Z Brassica rapa
C02p45630 Brassica napus
C02p45730 Brassica napus
C07p26570 Brassica napus
C07p50580 Brassica napus
CAN.G149.51 Capsicum annuum
CAN.G685.2 Capsicum annuum
CAN.G771.38 Capsicum annuum
CANSAT01G2299 Cannabis sativa
CANSAT35G1115 Cannabis sativa
CARHR177710 Cardamine hirsuta
CARHR177730 Cardamine hirsuta
CARHR179340 Cardamine hirsuta
CARHR226660 Cardamine hirsuta
Carub.0007s2133 Capsella rubella
Carub.0008s0330 Capsella rubella
Carub.0008s0331 Capsella rubella
Carub.0008s0455 Capsella rubella
Ca_09652_v3 Cicer arietinum L.
Ca_18764_v3 Cicer arietinum L.
Ca_29218_v3 Cicer arietinum L.
CBR_g19102 Chara braunii
CBR_g495 Chara braunii
CBR_g5623 Chara braunii
CBR_g8646 Chara braunii
Cc01_g17880 Coffea canephora
Cc09_g06130 Coffea canephora
Cc09_g06140 Coffea canephora
CDE02G0085 Ceratophyllum demersum
CDE02G2921 Ceratophyllum demersum
Cfa000713 Carpinus fangiana
Cfa025246 Carpinus fangiana
Cfa027191 Carpinus fangiana
Ciclev10015774m.g Citrus clementina
Ciclev10017875m.g Citrus clementina
Ciclev10020368m.g Citrus clementina
CiPaw.04G189300 Carya illinoinensis
CiPaw.09G077500 Carya illinoinensis
CiPaw.09G077600 Carya illinoinensis
CiPaw.09G077700 Carya illinoinensis
CiPaw.10G064800 Carya illinoinensis
ClCG01G009460 Citrullus lanatus
ClCG07G001360 Citrullus lanatus
COL.COLO4_10580 Corchorus olitorius
COL.COLO4_30990 Corchorus olitorius
Cpa.g.sc135.12 Carica papaya
Cpa.g.sc87.16 Carica papaya
Cre03.g154950 Chlamydomonas reinhardtii
Cre12.g538100 Chlamydomonas reinhardtii
Cre14.g611517 Chlamydomonas reinhardtii
CsaV3_1G046320 Cucumis sativus L.
CsaV3_3G028320 Cucumis sativus L.
CSS0000643 Camellia sinensis var. sinensis
CSS0015569 Camellia sinensis var. sinensis
CSS0026267 Camellia sinensis var. sinensis
CSS0035649 Camellia sinensis var. sinensis
CSS0047571 Camellia sinensis var. sinensis
DCAR_000565 Daucus carota
DCAR_003781 Daucus carota
Dinv01672 Davidia involucrata
Dinv05967 Davidia involucrata
Dinv16393 Davidia involucrata
Duzib160G0399 Durio zibethinus
Duzib211G0473 Durio zibethinus
ECA232G4481 Erigeron canadensis
ECA248G1644 Erigeron canadensis
EL10Ac7g17672 Beta vulgaris
EL10Ac8g18838 Beta vulgaris
Eucgr.D01044 Eucalyptus grandis
Eucgr.E01814 Eucalyptus grandis
Eucgr.E01874 Eucalyptus grandis
Eucgr.K01434 Eucalyptus grandis
Eucgr.L02304 Eucalyptus grandis
FAN08G2790 Fragaria x ananassa
FAN15G2269 Fragaria x ananassa
FAN16G2455 Fragaria x ananassa
FAN20G2348 Fragaria x ananassa
FAN21G0604 Fragaria x ananassa
FAN23G0869 Fragaria x ananassa
FAN24G0012 Fragaria x ananassa
FAN25G2844 Fragaria x ananassa
FAN27G0237 Fragaria x ananassa
FvH4_2g20660 Fragaria vesca
FvH4_3g12250 Fragaria vesca
Glyma.07G222400 Glycine max
Glyma.10G040000 Glycine max
Glyma.13G126502 Glycine max
Glyma.20G020300 Glycine max
Gohir.A05G145300 Gossypium hirsutum
Gohir.A07G151400 Gossypium hirsutum
Gohir.D05G147633 Gossypium hirsutum
Gohir.D05G147765 Gossypium hirsutum
Gohir.D07G157800 Gossypium hirsutum
Gorai.001G181000 Gossypium raimondii
Gorai.009G151800 Gossypium raimondii
GSVIVG01012071001 Vitis vinifera
GSVIVG01012072001 Vitis vinifera
GSVIVG01028410001 Vitis vinifera
HanXRQChr11g0336821 Helianthus annuus
HanXRQChr15g0487361 Helianthus annuus
HanXRQChr16g0505341 Helianthus annuus
Haze_24686 Corylus avellana
HPP92_022076 Vanilla planifolia
HPP92_027395 Vanilla planifolia
Hund18280 Selenicereus undatus
Hund22371 Selenicereus undatus
Lalb_Chr06g0170691 Lupinus albus
Lalb_Chr09g0328721 Lupinus albus
Lalb_Chr16g0385231 Lupinus albus
Lj1A1145T22 Lonicera japonica
Lj1A72G57 Lonicera japonica
Lj1A72T53 Lonicera japonica
Lj4g0013141 Lotus japonicus
Lj5g0027430 Lotus japonicus
Lsat_1_v5_gn_5_181360 Lactuca sativa
Lsat_1_v5_gn_8_117141 Lactuca sativa
Manes.13G040400 Manihot esculenta
Manes.16G057800 Manihot esculenta
Mapoly0016s0180 Marchantia polymorpha
Mapoly0185s0008 Marchantia polymorpha
MBI10_g36385_MAGBIO Magnolia biondii
MCO14G015 Micromonas commoda
MCO15G436 Micromonas commoda
MD05G1251900 Malus domestica
MD05G1252100 Malus domestica
MD05G1252400 Malus domestica
MD10G1233200 Malus domestica
MD10G1233400 Malus domestica
Medtr1g069575 Medicago truncatula
Medtr4g084040 Medicago truncatula
MELO3C003843.2 Cucumis melo
MELO3C012844.2 Cucumis melo
MELO3C021757.2 Cucumis melo
Migut.M01979 Erythranthe guttata
Migut.N02226 Erythranthe guttata
MSTRG.16345 Avicennia marina
MSTRG.17523 Avicennia marina
MSTRG.7594 Avicennia marina
Nitab4.5_0001288g0060 Nicotiana tabacum
Nitab4.5_0001288g0070 Nicotiana tabacum
Nitab4.5_0002538g0020 Nicotiana tabacum
Nitab4.5_0003167g0110 Nicotiana tabacum
Nitab4.5_0013428g0010 Nicotiana tabacum
Nn1g02946 Nelumbo nucifera
Nn7g38152 Nelumbo nucifera
Oeu052076.1 Olea europaea
Os02g0319300 Oryza sativa ssp. japonica
Os02g0814800 Oryza sativa ssp. japonica
Peaxi162Scf00149g00610 Petunia axillaris
Peaxi162Scf00517g00019 Petunia axillaris
PGR042G2322 Punica granatum
PGR083G0976 Punica granatum
PGSC0003DMG400010333 Solanum tuberosum
PGSC0003DMG400020077 Solanum tuberosum
Phvul.002G098300 Phaseolus vulgaris
Phvul.007G189800 Phaseolus vulgaris
Potri.014G192300 Populus trichocarpa
Potri.015G121600 Populus trichocarpa
Pp3c10_14090 Physcomitrium patens
Pp3c10_14096 Physcomitrium patens
Pp3c14_3240 Physcomitrium patens
PRCOL_00003736 Prasinoderma coloniale
PRCOL_00005140 Prasinoderma coloniale
Prupe.4G111700 Prunus persica
Prupe.8G216400 Prunus persica
Psat6g062920 Pisum sativum
Psat7g130560 Pisum sativum
PSO063G2720 Papaver somniferum
PSO541G1548 Papaver somniferum
PSO675G1120 Papaver somniferum
PSO675G4376 Papaver somniferum
PSO675G5936 Papaver somniferum
QL06p029638 Quercus lobata
QL09p041187 Quercus lobata
QL11p016333 Quercus lobata
QL11p016354 Quercus lobata
RcHm_v2.0_Chr5g0020071 Rosa chinensis
RcHm_v2.0_Chr6g0286841 Rosa chinensis
Rhsim03G0086200 Rhododendron simsii
Rhsim13G0039600 Rhododendron simsii
Sabra14G0143500 Salix brachista
Sabra15G0138000 Salix brachista
SalBow6G2699 Salvia bowleyana
SalBow6G5040 Salvia bowleyana
SalBow8G3202 Salvia bowleyana
Sc17g0004430 Simmondsia chinensis
Sc24g0002550 Simmondsia chinensis
Sed0011786 Sechium edule
Sed0022561 Sechium edule
SEGI_01503 Sequoiadendron giganteum
SEGI_16350 Sequoiadendron giganteum
SEGI_31756 Sequoiadendron giganteum
SGA_v2.0_scaffold175G39364 Striga asiatica
SGA_v2.0_scaffold42G16179 Striga asiatica
SMO117G0277 Selaginella moellendorffii
SMO338G0001 Selaginella moellendorffii
SMO358G0163 Selaginella moellendorffii
SMO358G0446 Selaginella moellendorffii
SMO358G0501 Selaginella moellendorffii
SMO358G0526 Selaginella moellendorffii
Solyc02g068900.3 Solanum lycopersicum
Solyc06g083770.4 Solanum lycopersicum
Sopen02g018000 Solanum pennellii
Sopen06g035180 Solanum pennellii
Sp2g08830 Schrenkiella parvula
Sp2g09800 Schrenkiella parvula
Sp7g18370 Schrenkiella parvula
TAR636G0310 Trochodendron aralioides
THA.LOC104801131 Tarenaya hassleriana
THA.LOC104811533 Tarenaya hassleriana
Thecc.01G251700 Theobroma cacao
Thecc.06G142200 Theobroma cacao
Thecc.06G142500 Theobroma cacao
Thecc.06G142700 Theobroma cacao
Thhalv10000959m.g Eutrema salsugineum
Thhalv10001139m.g Eutrema salsugineum
Thhalv10003220m.g Eutrema salsugineum
Thhalv10027346m.g Eutrema salsugineum
TPR.G20988 Trifolium pratense
TPR.G5659 Trifolium pratense
TWI12G0743 Tripterygium wilfordii
TWI38G1896 Tripterygium wilfordii
unitig_32.g10989 Utricularia gibba
unitig_85.g27266 Utricularia gibba
vmacro02706 Vaccinium macrocarpon
vmacro03517 Vaccinium macrocarpon
vmacro03518 Vaccinium macrocarpon
vmacro03519 Vaccinium macrocarpon
VMungo0720G1606 Vigna mungo
Zm00001eb048240 Zea mays
Zm00001eb132220 Zea mays
Zm00001eb132230 Zea mays
Zm00001eb191540 Zea mays
Zm00001eb202530 Zea mays
Zm00001eb270730 Zea mays
Zm00001eb284930 Zea mays
Zm00001eb332250 Zea mays
Zm00001eb363840 Zea mays

User provided reference genes

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