Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02020 Brassica napus
A04p28530 Brassica napus
A05p08580 Brassica napus
A10p24710 Brassica napus
Aa31LG5G22700 Aethionema arabicum
Aa31sc157G20 Aethionema arabicum
Actinidia02994 Actinidia chinensis
Actinidia11241 Actinidia chinensis
Actinidia19739 Actinidia chinensis
Actinidia26532 Actinidia chinensis
Actinidia38219 Actinidia chinensis
Ah.08g212170 Amaranthus hybridus
AL4G33740 Arabidopsis lyrata
AL6G24170 Arabidopsis lyrata
Aqoxy2G01951 Aquilegia oxysepala
Aqoxy4G03076 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1FT10B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.46K392 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B7QMA8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GPSB4L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KMKI2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KTYY32 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MSYP3Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QR9DU5 Arachis hypogaea
AT2G37370 Arabidopsis thaliana
AT5G13560 Arabidopsis thaliana
ATR0759G004 Amborella trichopoda
Atru.chr12.581 Acer truncatum
Atru.chr8.2497 Acer truncatum
AUR62035983 Chenopodium quinoa
AUR62041631 Chenopodium quinoa
BcaB01g05349 Brassica carinata
BcaB02g09287 Brassica carinata
BcaB06g28986 Brassica carinata
BcaC02g07520 Brassica carinata
BcaC02g11853 Brassica carinata
BcaC04g19107 Brassica carinata
BcaNung01145 Brassica carinata
BcaNung01891 Brassica carinata
BcaNung06331 Brassica carinata
BcaNung06332 Brassica carinata
BcaNung07146 Brassica carinata
BolC2t06564H Brassica oleracea
BolC2t06567H Brassica oleracea
BolC4t22660H Brassica oleracea
BolC4t28088H Brassica oleracea
BolC9t59198H Brassica oleracea
BraA02t05174Z Brassica rapa
BraA04t18331Z Brassica rapa
BraA05t19826Z Brassica rapa
BraA10t44534Z Brassica rapa
C02p06230 Brassica napus
C04p10670 Brassica napus
C04p65850 Brassica napus
C09p63540 Brassica napus
CAN.G1193.1 Capsicum annuum
CAN.G1557.3 Capsicum annuum
CAN.G350.13 Capsicum annuum
CAN.G350.14 Capsicum annuum
CAN.G350.15 Capsicum annuum
CANSAT56G2271 Cannabis sativa
CANSAT80G2521 Cannabis sativa
CARHR132230 Cardamine hirsuta
CARHR199880 Cardamine hirsuta
Carub.0004s1927 Capsella rubella
Carub.0006s1172 Capsella rubella
Ca_09590_v3 Cicer arietinum L.
Ca_11316_v3 Cicer arietinum L.
CBR_g3031 Chara braunii
Cc02_g08560 Coffea canephora
CDE04G0782 Ceratophyllum demersum
CDE07G0510 Ceratophyllum demersum
Cfa017456 Carpinus fangiana
Ciclev10013477m.g Citrus clementina
Ciclev10030880m.g Citrus clementina
CiPaw.02G178900 Carya illinoinensis
CiPaw.10G140700 Carya illinoinensis
ClCG02G013630 Citrullus lanatus
ClCG04G008590 Citrullus lanatus
ClCG04G008600 Citrullus lanatus
COL.COLO4_02810 Corchorus olitorius
COL.COLO4_07089 Corchorus olitorius
COL.COLO4_10883 Corchorus olitorius
Cpa.g.c35913 Carica papaya
Cpa.g.sc1.311 Carica papaya
Cpa.g.sc114.14 Carica papaya
Cpa.g.sc114.15 Carica papaya
CsaV3_4G024570 Cucumis sativus L.
CsaV3_5G006560 Cucumis sativus L.
CSS0006098 Camellia sinensis var. sinensis
CSS0018068 Camellia sinensis var. sinensis
CSS0029275 Camellia sinensis var. sinensis
DCAR_012482 Daucus carota
DCAR_014947 Daucus carota
DCAR_015242 Daucus carota
DCAR_015698 Daucus carota
DCAR_019157 Daucus carota
Dinv25944 Davidia involucrata
Dinv35666 Davidia involucrata
Duzib093G0680 Durio zibethinus
Duzib114G1018 Durio zibethinus
Duzib128G0207 Durio zibethinus
Duzib128G0545 Durio zibethinus
ECA238G1105 Erigeron canadensis
ECA238G1402 Erigeron canadensis
ECA248G0489 Erigeron canadensis
EL10Ac2g03481 Beta vulgaris
Eucgr.A01215 Eucalyptus grandis
Eucgr.G02771 Eucalyptus grandis
FAN01G2818 Fragaria x ananassa
FAN02G4074 Fragaria x ananassa
FAN03G3213 Fragaria x ananassa
FAN05G2025 Fragaria x ananassa
FAN05G3048 Fragaria x ananassa
FAN05G3888 Fragaria x ananassa
FAN05G5123 Fragaria x ananassa
FAN06G0204 Fragaria x ananassa
FAN06G4957 Fragaria x ananassa
FAN09G3987 Fragaria x ananassa
FAN10G1751 Fragaria x ananassa
FAN14G4160 Fragaria x ananassa
FvH4_6g14710 Fragaria vesca
FvH4_7g20871 Fragaria vesca
Glyma.10G046300 Glycine max
Glyma.10G292100 Glycine max
Glyma.13G134400 Glycine max
Glyma.20G241400 Glycine max
Gohir.A05G352300 Gossypium hirsutum
Gohir.A10G209900 Gossypium hirsutum
Gohir.A13G093535 Gossypium hirsutum
Gohir.D04G060532 Gossypium hirsutum
Gohir.D04G060600 Gossypium hirsutum
Gohir.D10G218200 Gossypium hirsutum
Gohir.D13G097500 Gossypium hirsutum
Gorai.001G249200 Gossypium raimondii
Gorai.011G244900 Gossypium raimondii
Gorai.012G067500 Gossypium raimondii
GSVIVG01025589001 Vitis vinifera
GSVIVG01032617001 Vitis vinifera
HanXRQChr05g0149381 Helianthus annuus
HanXRQChr07g0191731 Helianthus annuus
HanXRQChr07g0196081 Helianthus annuus
HanXRQChr11g0349481 Helianthus annuus
HanXRQChr14g0444611 Helianthus annuus
Haze_16977 Corylus avellana
Haze_20704 Corylus avellana
HPP92_000640 Vanilla planifolia
HPP92_000707 Vanilla planifolia
HPP92_000710 Vanilla planifolia
HPP92_019809 Vanilla planifolia
Hund30771 Selenicereus undatus
Lalb_Chr02g0153331 Lupinus albus
Lalb_Chr06g0164131 Lupinus albus
Lalb_Chr21g0307211 Lupinus albus
Lj1C930G3 Lonicera japonica
Lj5A228T46 Lonicera japonica
Lj5g0002945 Lotus japonicus
Lj5g0009891 Lotus japonicus
Lsat_1_v5_gn_1_54860 Lactuca sativa
Lsat_1_v5_gn_2_111361 Lactuca sativa
Lsat_1_v5_gn_2_52021 Lactuca sativa
Lsat_1_v5_gn_2_68321 Lactuca sativa
Lsat_1_v5_gn_2_9340 Lactuca sativa
Lsat_1_v5_gn_4_173021 Lactuca sativa
Manes.07G107300 Manihot esculenta
Manes.08G072951 Manihot esculenta
Manes.09G088332 Manihot esculenta
Manes.10G038600 Manihot esculenta
Mapoly0007s0083 Marchantia polymorpha
MBI14_g35935_MAGBIO Magnolia biondii
MBI14_g41359_MAGBIO Magnolia biondii
MD04G1116900 Malus domestica
MD04G1117000 Malus domestica
MD07G1186500 Malus domestica
MD12G1132600 Malus domestica
MD13G1157000 Malus domestica
Medtr1g067400 Medicago truncatula
Medtr1g115610 Medicago truncatula
MELO3C003090.2 Cucumis melo
MELO3C023813.2 Cucumis melo
Migut.F00787 Erythranthe guttata
Migut.J00387 Erythranthe guttata
Nitab4.5_0000426g0160 Nicotiana tabacum
Nitab4.5_0000426g0180 Nicotiana tabacum
Nitab4.5_0000643g0100 Nicotiana tabacum
Nitab4.5_0003274g0040 Nicotiana tabacum
Nitab4.5_0006800g0020 Nicotiana tabacum
Nitab4.5_0008987g0020 Nicotiana tabacum
Nitab4.5_0010302g0010 Nicotiana tabacum
Nitab4.5_0010302g0020 Nicotiana tabacum
Nn2g12844 Nelumbo nucifera
Nn8g40989 Nelumbo nucifera
Oeu035171.6 Olea europaea
Oeu058316.1 Olea europaea
Oeu058317.1 Olea europaea
Os01g0155400 Oryza sativa ssp. japonica
Os03g0281300 Oryza sativa ssp. japonica
Os05g0162200 Oryza sativa ssp. japonica
Peaxi162Scf00039g00427 Petunia axillaris
Peaxi162Scf00060g00621 Petunia axillaris
Peaxi162Scf00658g00633 Petunia axillaris
Peaxi162Scf00658g00638 Petunia axillaris
PGR004G1111 Punica granatum
PGR004G1305 Punica granatum
PGR142G0021 Punica granatum
PGSC0003DMG400023933 Solanum tuberosum
Phvul.007G008700 Phaseolus vulgaris
Phvul.007G160300 Phaseolus vulgaris
Phvul.007G160400 Phaseolus vulgaris
Phvul.007G160500 Phaseolus vulgaris
Potri.008G048100 Populus trichocarpa
Potri.010G212900 Populus trichocarpa
Potri.016G080900 Populus trichocarpa
Prupe.2G225300 Prunus persica
Prupe.6G246700 Prunus persica
Psat6g069560 Pisum sativum
Psat6g238320 Pisum sativum
PSO339G4555 Papaver somniferum
PSO339G5867 Papaver somniferum
PSO384G0194 Papaver somniferum
PSO384G0295 Papaver somniferum
QL07p046169 Quercus lobata
QL08p057705 Quercus lobata
QL10p058683 Quercus lobata
RcHm_v2.0_Chr1g0318791 Rosa chinensis
RcHm_v2.0_Chr1g0356591 Rosa chinensis
RcHm_v2.0_Chr1g0365121 Rosa chinensis
RcHm_v2.0_Chr1g0376421 Rosa chinensis
RcHm_v2.0_Chr3g0467931 Rosa chinensis
RcHm_v2.0_Chr7g0185661 Rosa chinensis
RcHm_v2.0_Chr7g0221351 Rosa chinensis
RcHm_v2.0_Chr7g0221371 Rosa chinensis
Rhsim03G0125700 Rhododendron simsii
Rhsim05G0185500 Rhododendron simsii
Sabra08G0034300 Salix brachista
Sabra10G0164800 Salix brachista
Sabra16G0089100 Salix brachista
Sabra19G0108800 Salix brachista
SalBow3G3882 Salvia bowleyana
Sc20g0002370 Simmondsia chinensis
Sc20g0004320 Simmondsia chinensis
Sed0008808 Sechium edule
Sed0014281 Sechium edule
Sed0019600 Sechium edule
Sed0027492 Sechium edule
SEGI_16101 Sequoiadendron giganteum
SEGI_35124 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33857 Striga asiatica
SGA_v2.0_scaffold243G44313 Striga asiatica
SMO141G0283 Selaginella moellendorffii
Solyc04g010220.3 Solanum lycopersicum
Solyc06g036570.1 Solanum lycopersicum
Solyc09g005890.4 Solanum lycopersicum
Solyc09g005900.2 Solanum lycopersicum
Sopen04g005400 Solanum pennellii
Sopen06g008260 Solanum pennellii
Sopen09g001760 Solanum pennellii
Sp4g19680 Schrenkiella parvula
Sp6g30470 Schrenkiella parvula
TAR369G0742 Trochodendron aralioides
TAR623G1778 Trochodendron aralioides
THA.LOC104799368 Tarenaya hassleriana
THA.LOC104806596 Tarenaya hassleriana
Thecc.05G048000 Theobroma cacao
Thecc.10G060500 Theobroma cacao
Thhalv10012885m.g Eutrema salsugineum
Thhalv10016358m.g Eutrema salsugineum
TPR.G11038 Trifolium pratense
TPR.G20924 Trifolium pratense
TPR.G31418 Trifolium pratense
TPR.G31960 Trifolium pratense
TPR.G36492 Trifolium pratense
TWI38G1115 Tripterygium wilfordii
TWI53G1649 Tripterygium wilfordii
unitig_0.g1962 Utricularia gibba
unitig_578.g15725 Utricularia gibba
vmacro07136 Vaccinium macrocarpon
vmacro07137 Vaccinium macrocarpon
vmacro16456 Vaccinium macrocarpon
vmacro20102 Vaccinium macrocarpon
VMungo0647G0825 Vigna mungo
VMungo0720G0203 Vigna mungo
VMungo0720G0714 Vigna mungo
VMungo0720G1838 Vigna mungo
VMungo0720G2740 Vigna mungo
Zm00001eb082530 Zea mays
Zm00001eb109160 Zea mays
Zm00001eb123790 Zea mays
Zm00001eb221210 Zea mays
Zm00001eb282390 Zea mays
Zm00001eb358820 Zea mays
Zm00001eb397330 Zea mays

User provided reference genes

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