Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p26290 Brassica napus
Aa31LG8G9000 Aethionema arabicum
Actinidia07217 Actinidia chinensis
Actinidia18583 Actinidia chinensis
Actinidia23510 Actinidia chinensis
Actinidia24186 Actinidia chinensis
Actinidia36958 Actinidia chinensis
Actinidia40145 Actinidia chinensis
Ah.04g157050 Amaranthus hybridus
Ah.04g157080 Amaranthus hybridus
Ah.04g163710 Amaranthus hybridus
Ah.08g216030 Amaranthus hybridus
Ah.13g072680 Amaranthus hybridus
AL3G36740 Arabidopsis lyrata
Aqoxy2G01357 Aquilegia oxysepala
Aqoxy2G03391 Aquilegia oxysepala
Aqoxy4G02858 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5P4QKH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CLV3JT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q8TT5G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TMAT12 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WY8BRN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y62G5D Arachis hypogaea
AT3G22430 Arabidopsis thaliana
ATR0697G286 Amborella trichopoda
ATR0820G154 Amborella trichopoda
Atru.chr12.977 Acer truncatum
Atru.chr3.3356 Acer truncatum
Atru.ctg752_3.77 Acer truncatum
AUR62009803 Chenopodium quinoa
AUR62030725 Chenopodium quinoa
AUR62033632 Chenopodium quinoa
AUR62034749 Chenopodium quinoa
AUR62036362 Chenopodium quinoa
AUR62039251 Chenopodium quinoa
AUR62043074 Chenopodium quinoa
BcaB06g26348 Brassica carinata
BcaC05g28069 Brassica carinata
BolC5t32833H Brassica oleracea
BraA05t21506Z Brassica rapa
C05p40910 Brassica napus
CAN.G490.5 Capsicum annuum
CAN.G490.6 Capsicum annuum
CAN.G534.15 Capsicum annuum
CAN.G644.19 Capsicum annuum
CANSAT54G1082 Cannabis sativa
CANSAT54G1757 Cannabis sativa
CANSAT56G1674 Cannabis sativa
CANSAT78G0613 Cannabis sativa
CARHR098340 Cardamine hirsuta
Carub.0003s2261 Capsella rubella
Ca_10501_v3 Cicer arietinum L.
Ca_10897_v3 Cicer arietinum L.
Ca_10898_v3 Cicer arietinum L.
Cc01_g09630 Coffea canephora
Cc02_g09970 Coffea canephora
Cc03_g03780 Coffea canephora
CDE02G0428 Ceratophyllum demersum
CDE05G2383 Ceratophyllum demersum
CDE06G0922 Ceratophyllum demersum
CDE08G1015 Ceratophyllum demersum
CDE08G1497 Ceratophyllum demersum
Cfa011244 Carpinus fangiana
Cfa015645 Carpinus fangiana
Ciclev10005503m.g Citrus clementina
Ciclev10005817m.g Citrus clementina
Ciclev10030758m.g Citrus clementina
CiPaw.01G166000 Carya illinoinensis
CiPaw.02G097300 Carya illinoinensis
CiPaw.13G037400 Carya illinoinensis
CiPaw.14G029600 Carya illinoinensis
ClCG02G021960 Citrullus lanatus
ClCG06G006230 Citrullus lanatus
ClCG08G008160 Citrullus lanatus
COL.COLO4_19955 Corchorus olitorius
COL.COLO4_20106 Corchorus olitorius
COL.COLO4_21477 Corchorus olitorius
COL.COLO4_21478 Corchorus olitorius
Cpa.g.sc19.12 Carica papaya
Cpa.g.sc509.3 Carica papaya
Cpa.g.sc58.107 Carica papaya
Cpa.g.sc58.109 Carica papaya
CsaV3_6G004130 Cucumis sativus L.
CsaV3_6G014790 Cucumis sativus L.
CsaV3_7G022500 Cucumis sativus L.
CSS0005169 Camellia sinensis var. sinensis
CSS0033098 Camellia sinensis var. sinensis
CSS0035785 Camellia sinensis var. sinensis
CSS0045550 Camellia sinensis var. sinensis
DCAR_006351 Daucus carota
DCAR_012177 Daucus carota
DCAR_027217 Daucus carota
Dinv01755 Davidia involucrata
Dinv06794 Davidia involucrata
Dinv13995 Davidia involucrata
Dinv20806 Davidia involucrata
Dinv42583 Davidia involucrata
Dinv44536 Davidia involucrata
Duzib106G1173 Durio zibethinus
Duzib114G0931 Durio zibethinus
Duzib151G0125 Durio zibethinus
Duzib168G1650 Durio zibethinus
Duzib212G0102 Durio zibethinus
ECA233G1823 Erigeron canadensis
ECA240G3014 Erigeron canadensis
EL10Ac4g08663 Beta vulgaris
EL10Ac7g15783 Beta vulgaris
EL10As3g23290 Beta vulgaris
Eucgr.B03884 Eucalyptus grandis
Eucgr.H03481 Eucalyptus grandis
Eucgr.J01002 Eucalyptus grandis
FAN01G2365 Fragaria x ananassa
FAN03G0072 Fragaria x ananassa
FAN06G0045 Fragaria x ananassa
FAN07G0096 Fragaria x ananassa
FAN10G0348 Fragaria x ananassa
FAN11G0858 Fragaria x ananassa
FAN12G2432 Fragaria x ananassa
FAN16G2766 Fragaria x ananassa
FAN17G0990 Fragaria x ananassa
FAN22G1262 Fragaria x ananassa
FAN22G1532 Fragaria x ananassa
FAN25G2392 Fragaria x ananassa
FvH4_3g29670 Fragaria vesca
FvH4_4g15540 Fragaria vesca
FvH4_7g05850 Fragaria vesca
Glyma.10G202800 Glycine max
Glyma.10G248100 Glycine max
Glyma.20G146000 Glycine max
Glyma.20G187500 Glycine max
Gohir.A05G395100 Gossypium hirsutum
Gohir.A07G108250 Gossypium hirsutum
Gohir.A09G056100 Gossypium hirsutum
Gohir.D04G019900 Gossypium hirsutum
Gohir.D07G112001 Gossypium hirsutum
Gohir.D09G055300 Gossypium hirsutum
Gorai.001G120400 Gossypium raimondii
Gorai.006G068300 Gossypium raimondii
Gorai.012G023700 Gossypium raimondii
GSVIVG01017976001 Vitis vinifera
GSVIVG01018197001 Vitis vinifera
GSVIVG01031382001 Vitis vinifera
GSVIVG01034740001 Vitis vinifera
HanXRQChr05g0145901 Helianthus annuus
HanXRQChr08g0217861 Helianthus annuus
Haze_00900 Corylus avellana
Haze_02585 Corylus avellana
Hma1.2p1_0246F.1_g101720 Hydrangea macrophylla
Hma1.2p1_1344F.1_g277120 Hydrangea macrophylla
HPP92_009790 Vanilla planifolia
HPP92_024362 Vanilla planifolia
Lalb_Chr02g0140601 Lupinus albus
Lalb_Chr02g0151431 Lupinus albus
Lalb_Chr14g0374161 Lupinus albus
Lalb_Chr14g0374171 Lupinus albus
Lalb_Chr21g0313261 Lupinus albus
Lj1A223G52 Lonicera japonica
Lj2A29T81 Lonicera japonica
Lj2A990G28 Lonicera japonica
Lj2C29T14 Lonicera japonica
Lj3P735T17 Lonicera japonica
Lj5g0003431 Lotus japonicus
Lj5g0012410 Lotus japonicus
Lj6A608G62 Lonicera japonica
Lsat_1_v5_gn_7_67261 Lactuca sativa
Lsat_1_v5_gn_8_24480 Lactuca sativa
Manes.03G178600 Manihot esculenta
Manes.10G057200 Manihot esculenta
Manes.11G158900 Manihot esculenta
Mapoly0044s0053 Marchantia polymorpha
Mapoly0114s0031 Marchantia polymorpha
MD02G1254600 Malus domestica
MD03G1136700 Malus domestica
MD07G1067200 Malus domestica
MD13G1193000 Malus domestica
MD16G1193900 Malus domestica
Medtr1g103730 Medicago truncatula
Medtr1g103740 Medicago truncatula
Medtr1g492940 Medicago truncatula
MELO3C012650.2 Cucumis melo
MELO3C019889.2 Cucumis melo
MELO3C021446.2 Cucumis melo
Migut.D02361 Erythranthe guttata
Migut.G00339 Erythranthe guttata
Migut.O00646 Erythranthe guttata
MSTRG.4031 Avicennia marina
Nitab4.5_0000962g0080 Nicotiana tabacum
Nitab4.5_0004070g0010 Nicotiana tabacum
Nitab4.5_0004258g0040 Nicotiana tabacum
Nitab4.5_0005390g0030 Nicotiana tabacum
Nitab4.5_0006089g0010 Nicotiana tabacum
Nitab4.5_0024240g0010 Nicotiana tabacum
Nn1g02320 Nelumbo nucifera
Nn4g26323 Nelumbo nucifera
Nn6g35014 Nelumbo nucifera
Nn7g37310 Nelumbo nucifera
Oeu011619.2 Olea europaea
Oeu020078.1 Olea europaea
Oeu050195.1 Olea europaea
Oeu059860.1 Olea europaea
Os03g0159200 Oryza sativa ssp. japonica
Os11g0579700 Oryza sativa ssp. japonica
Peaxi162Scf00002g05421 Petunia axillaris
Peaxi162Scf00092g01019 Petunia axillaris
Peaxi162Scf00244g01214 Petunia axillaris
PGR004G1373 Punica granatum
PGR044G0491 Punica granatum
PGR102G1882 Punica granatum
PGSC0003DMG400019495 Solanum tuberosum
PGSC0003DMG400026527 Solanum tuberosum
PGSC0003DMG400030084 Solanum tuberosum
Phvul.007G057400 Phaseolus vulgaris
Phvul.007G104100 Phaseolus vulgaris
Potri.008G024500 Populus trichocarpa
Potri.008G152900 Populus trichocarpa
Potri.009G147201 Populus trichocarpa
Potri.010G087400 Populus trichocarpa
Potri.010G235700 Populus trichocarpa
Prupe.1G013600 Prunus persica
Prupe.2G084400 Prunus persica
Prupe.6G121100 Prunus persica
Psat6g176920 Pisum sativum
Psat6g207480 Pisum sativum
PSO210G3829 Papaver somniferum
PSO384G5061 Papaver somniferum
PSO443G0025 Papaver somniferum
PSO832G1500 Papaver somniferum
QL04p042592 Quercus lobata
QL06p002477 Quercus lobata
RcHm_v2.0_Chr1g0332961 Rosa chinensis
RcHm_v2.0_Chr4g0416221 Rosa chinensis
RcHm_v2.0_Chr5g0055031 Rosa chinensis
Rhsim03G0104900 Rhododendron simsii
Rhsim04G0202200 Rhododendron simsii
Rhsim13G0106900 Rhododendron simsii
Sabra08G0016500 Salix brachista
Sabra08G0116500 Salix brachista
Sabra10G0055300 Salix brachista
Sabra10G0055400 Salix brachista
Sabra10G0182800 Salix brachista
SalBow2G1797 Salvia bowleyana
SalBow2G3435 Salvia bowleyana
SalBow6G0002 Salvia bowleyana
Sc09g0005520 Simmondsia chinensis
Sc15g0003290 Simmondsia chinensis
Sc19g0004150 Simmondsia chinensis
Sed0017107 Sechium edule
Sed0017994 Sechium edule
Sed0017996 Sechium edule
Sed0026294 Sechium edule
SEGI_09221 Sequoiadendron giganteum
SEGI_20010 Sequoiadendron giganteum
SEGI_23348 Sequoiadendron giganteum
SEGI_25058 Sequoiadendron giganteum
SEGI_25454 Sequoiadendron giganteum
SEGI_33353 Sequoiadendron giganteum
SEGI_35071 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36352 Striga asiatica
SGA_v2.0_scaffold257G45713 Striga asiatica
SGA_v2.0_scaffold39G15232 Striga asiatica
SGA_v2.0_scaffold39G15233 Striga asiatica
Solyc09g076040.3 Solanum lycopersicum
Solyc11g007310.3 Solanum lycopersicum
Solyc11g066990.2 Solanum lycopersicum
Sopen09g030870 Solanum pennellii
Sopen11g003200 Solanum pennellii
Sopen11g026700 Solanum pennellii
Sp3g20200 Schrenkiella parvula
TAR362G0281 Trochodendron aralioides
TAR362G0728 Trochodendron aralioides
TAR362G0961 Trochodendron aralioides
TAR365G0854 Trochodendron aralioides
TAR633G0746 Trochodendron aralioides
TAR636G0035 Trochodendron aralioides
TAR636G0317 Trochodendron aralioides
TAR636G3230 Trochodendron aralioides
THA.LOC104808546 Tarenaya hassleriana
Thecc.04G232000 Theobroma cacao
Thecc.09G289700 Theobroma cacao
Thecc.10G104000 Theobroma cacao
Thhalv10020450m.g Eutrema salsugineum
TPR.G2524 Trifolium pratense
TPR.G5506 Trifolium pratense
TWI09G0856 Tripterygium wilfordii
TWI15G0532 Tripterygium wilfordii
TWI38G0268 Tripterygium wilfordii
TWI73G1015 Tripterygium wilfordii
TWI79G0679 Tripterygium wilfordii
vmacro07230 Vaccinium macrocarpon
VMungo0720G0449 Vigna mungo
Zm00001eb138970 Zea mays
Zm00001eb200440 Zea mays
Zm00001eb403270 Zea mays

User provided reference genes

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