Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p25210 Brassica napus
A06p18900 Brassica napus
A06p27950 Brassica napus
A06p34580 Brassica napus
Aa31LG4G17340 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5504 Anthoceros agrestis
Actinidia08898 Actinidia chinensis
Actinidia09607 Actinidia chinensis
Actinidia34006 Actinidia chinensis
Ah.02g114700 Amaranthus hybridus
Ah.03g135680 Amaranthus hybridus
AL5G28310 Arabidopsis lyrata
AL6G34950 Arabidopsis lyrata
Aqoxy5G03199 Aquilegia oxysepala
Aqoxy5G03200 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.NW2AGJ Arachis hypogaea
AT3G48800 Arabidopsis thaliana
AT5G23680 Arabidopsis thaliana
ATR0582G053 Amborella trichopoda
Atru.chr11.2414 Acer truncatum
Atru.chr6.1893 Acer truncatum
Atru.chr9.440 Acer truncatum
AUR62005698 Chenopodium quinoa
AUR62028858 Chenopodium quinoa
BcaB01g00778 Brassica carinata
BcaB05g22986 Brassica carinata
BcaB08g34715 Brassica carinata
BcaC01g02377 Brassica carinata
BcaC07g39360 Brassica carinata
BcaC09g49903 Brassica carinata
BcaNung01848 Brassica carinata
BcaNung01849 Brassica carinata
BcaNung01850 Brassica carinata
BcaNung05210 Brassica carinata
BolC1t03082H Brassica oleracea
BolC3t18852H Brassica oleracea
BolC7t44919H Brassica oleracea
BolC8t50008H Brassica oleracea
BraA01t02431Z Brassica rapa
BraA06t24973Z Brassica rapa
BraA06t25735Z Brassica rapa
BraA06t26386Z Brassica rapa
C01p31480 Brassica napus
C03p65940 Brassica napus
C07p43910 Brassica napus
C08p23820 Brassica napus
CAN.G302.5 Capsicum annuum
CAN.G637.56 Capsicum annuum
CANSAT01G2027 Cannabis sativa
CANSAT80G0059 Cannabis sativa
CANSAT80G1450 Cannabis sativa
CARHR157610 Cardamine hirsuta
CARHR189880 Cardamine hirsuta
Carub.0005s1496 Capsella rubella
Carub.0006s2143 Capsella rubella
Ca_07089_v3 Cicer arietinum L.
Ca_16079_v3 Cicer arietinum L.
Ca_17577_v3 Cicer arietinum L.
CBR_g31169 Chara braunii
CBR_g70740 Chara braunii
Cc00_g28550 Coffea canephora
Cc04_g08240 Coffea canephora
Cc04_g09450 Coffea canephora
CDE01G0585 Ceratophyllum demersum
CDE02G2516 Ceratophyllum demersum
CDE02G4310 Ceratophyllum demersum
CDE09G0951 Ceratophyllum demersum
Cfa018728 Carpinus fangiana
Ciclev10021188m.g Citrus clementina
Ciclev10031840m.g Citrus clementina
Ciclev10032137m.g Citrus clementina
CiPaw.05G103300 Carya illinoinensis
CiPaw.06G108100 Carya illinoinensis
CiPaw.11G002000 Carya illinoinensis
ClCG06G015410 Citrullus lanatus
ClCG06G018240 Citrullus lanatus
COL.COLO4_16694 Corchorus olitorius
COL.COLO4_24292 Corchorus olitorius
Cpa.g.sc3.228 Carica papaya
Cpa.g.sc4.114 Carica papaya
CsaV3_1G000210 Cucumis sativus L.
CsaV3_1G003310 Cucumis sativus L.
CSS0002586 Camellia sinensis var. sinensis
CSS0004587 Camellia sinensis var. sinensis
CSS0038490 Camellia sinensis var. sinensis
CSS0042081 Camellia sinensis var. sinensis
DCAR_007514 Daucus carota
DCAR_016357 Daucus carota
DCAR_026257 Daucus carota
DCAR_026258 Daucus carota
Dinv09218 Davidia involucrata
Dinv11217 Davidia involucrata
Dinv17461 Davidia involucrata
Dinv23200 Davidia involucrata
Dinv38639 Davidia involucrata
Duzib068G0017 Durio zibethinus
Duzib068G0189 Durio zibethinus
Duzib084G0534 Durio zibethinus
Duzib205G0125 Durio zibethinus
Duzib205G0973 Durio zibethinus
ECA232G1079 Erigeron canadensis
ECA246G0615 Erigeron canadensis
EL10Ac5g11329 Beta vulgaris
EL10Ac6g13591 Beta vulgaris
Eucgr.G01957 Eucalyptus grandis
Eucgr.K02200 Eucalyptus grandis
Eucgr.K02629 Eucalyptus grandis
FAN04G1150 Fragaria x ananassa
FAN08G1941 Fragaria x ananassa
FAN12G0561 Fragaria x ananassa
FAN13G2498 Fragaria x ananassa
FAN18G4021 Fragaria x ananassa
FvH4_4g22930 Fragaria vesca
FvH4_5g09120 Fragaria vesca
Glyma.04G199700 Glycine max
Glyma.05G201800 Glycine max
Glyma.06G165800 Glycine max
Glyma.08G009200 Glycine max
Glyma.08G258000 Glycine max
Glyma.18G282400 Glycine max
Gohir.A03G055000 Gossypium hirsutum
Gohir.A03G071500 Gossypium hirsutum
Gohir.A07G047700 Gossypium hirsutum
Gohir.A07G058500 Gossypium hirsutum
Gohir.A09G247800 Gossypium hirsutum
Gohir.A11G037901 Gossypium hirsutum
Gohir.A12G192900 Gossypium hirsutum
Gohir.D03G098100 Gossypium hirsutum
Gohir.D03G111900 Gossypium hirsutum
Gohir.D07G052000 Gossypium hirsutum
Gohir.D07G063400 Gossypium hirsutum
Gohir.D09G248600 Gossypium hirsutum
Gohir.D11G041200 Gossypium hirsutum
Gohir.D12G195000 Gossypium hirsutum
Gorai.001G055000 Gossypium raimondii
Gorai.001G066900 Gossypium raimondii
Gorai.003G103200 Gossypium raimondii
Gorai.003G118200 Gossypium raimondii
Gorai.006G272900 Gossypium raimondii
Gorai.007G044300 Gossypium raimondii
Gorai.008G209700 Gossypium raimondii
GSVIVG01008623001 Vitis vinifera
HanXRQChr02g0034211 Helianthus annuus
HanXRQChr08g0236351 Helianthus annuus
HanXRQChr16g0502201 Helianthus annuus
Haze_07120 Corylus avellana
Haze_12481 Corylus avellana
Hma1.2p1_0093F.1_g047040 Hydrangea macrophylla
Hma1.2p1_0168F.1_g074140 Hydrangea macrophylla
Hma1.2p1_0459F.1_g157130 Hydrangea macrophylla
HPP92_001932 Vanilla planifolia
HPP92_011745 Vanilla planifolia
HPP92_013601 Vanilla planifolia
HPP92_021624 Vanilla planifolia
Hund02484 Selenicereus undatus
Hund25504 Selenicereus undatus
Lalb_Chr07g0183691 Lupinus albus
Lalb_Chr07g0183711 Lupinus albus
Lalb_Chr10g0092171 Lupinus albus
Lalb_Chr13g0297071 Lupinus albus
Lj1g0001094 Lotus japonicus
Lj1g0025612 Lotus japonicus
Lj4g0003672 Lotus japonicus
Lj9P484T49 Lonicera japonica
Lsat_1_v5_gn_1_32321 Lactuca sativa
Lsat_1_v5_gn_4_113580 Lactuca sativa
Lsat_1_v5_gn_5_10720 Lactuca sativa
Manes.06G080500 Manihot esculenta
Manes.06G125000 Manihot esculenta
Manes.08G102500 Manihot esculenta
Manes.09G186400 Manihot esculenta
Manes.14G046500 Manihot esculenta
Mapoly0108s0003 Marchantia polymorpha
Mapoly0110s0051 Marchantia polymorpha
MBI07_g40355_MAGBIO Magnolia biondii
MBI15_g04988_MAGBIO Magnolia biondii
MD04G1000300 Malus domestica
MD06G1133400 Malus domestica
MD13G1128000 Malus domestica
MD13G1128300 Malus domestica
MD14G1149800 Malus domestica
MD16G1128400 Malus domestica
Medtr3g498865 Medicago truncatula
Medtr7g021220 Medicago truncatula
Medtr8g099820 Medicago truncatula
MELO3C017254.2 Cucumis melo
MELO3C026174.2 Cucumis melo
Migut.D01227 Erythranthe guttata
Migut.K01040 Erythranthe guttata
MSTRG.464 Avicennia marina
Nitab4.5_0000060g0010 Nicotiana tabacum
Nitab4.5_0000208g0020 Nicotiana tabacum
Nitab4.5_0001408g0050 Nicotiana tabacum
Nitab4.5_0003009g0020 Nicotiana tabacum
Nitab4.5_0007858g0020 Nicotiana tabacum
Nitab4.5_0012236g0020 Nicotiana tabacum
Nn2g15281 Nelumbo nucifera
Nn2g15282 Nelumbo nucifera
Nn3g17544 Nelumbo nucifera
Nn4g22185 Nelumbo nucifera
Oeu003274.1 Olea europaea
Oeu055476.1 Olea europaea
Oeu058898.1 Olea europaea
Os03g0850300 Oryza sativa ssp. japonica
Os12g0478900 Oryza sativa ssp. japonica
Peaxi162Scf00128g01713 Petunia axillaris
Peaxi162Scf00171g00115 Petunia axillaris
PGR044G0596 Punica granatum
PGR083G0760 Punica granatum
PGR119G0501 Punica granatum
PGSC0003DMG400006479 Solanum tuberosum
PGSC0003DMG400019853 Solanum tuberosum
Phvul.002G283300 Phaseolus vulgaris
Phvul.008G018600 Phaseolus vulgaris
Phvul.008G018900 Phaseolus vulgaris
Phvul.009G163900 Phaseolus vulgaris
Potri.001G062800 Populus trichocarpa
Potri.003G164600 Populus trichocarpa
Potri.012G104700 Populus trichocarpa
Potri.015G104000 Populus trichocarpa
Pp3c16_18930 Physcomitrium patens
Prupe.5G144600 Prunus persica
Psat1g163520 Pisum sativum
Psat3g189240 Pisum sativum
Psat5g054200 Pisum sativum
Psat5g162560 Pisum sativum
Psat7g038560 Pisum sativum
PSO017G3403 Papaver somniferum
PSO017G5249 Papaver somniferum
PSO017G5758 Papaver somniferum
PSO017G6198 Papaver somniferum
PSO478G2317 Papaver somniferum
PSO478G4482 Papaver somniferum
PSO478G4492 Papaver somniferum
QL03p049930 Quercus lobata
QL10p001059 Quercus lobata
QL10p020791 Quercus lobata
RcHm_v2.0_Chr4g0429181 Rosa chinensis
RcHm_v2.0_Chr7g0189071 Rosa chinensis
Rhsim12G0098700 Rhododendron simsii
Sabra01G0045200 Salix brachista
Sabra03G0119800 Salix brachista
Sabra12G0077100 Salix brachista
Sabra15G0123800 Salix brachista
SalBow2G2147 Salvia bowleyana
Sc11g0000170 Simmondsia chinensis
Sc22g0003530 Simmondsia chinensis
Sed0003351 Sechium edule
Sed0007661 Sechium edule
SEGI_25350 Sequoiadendron giganteum
SEGI_40179 Sequoiadendron giganteum
SGA_v2.0_scaffold72G24181 Striga asiatica
SGA_v2.0_scaffold72G24183 Striga asiatica
SGA_v2.0_scaffold87G27185 Striga asiatica
SMO364G0391 Selaginella moellendorffii
Solyc03g097760.2 Solanum lycopersicum
Solyc05g023820.3 Solanum lycopersicum
Sopen03g028520 Solanum pennellii
Sopen05g018410 Solanum pennellii
Sp2g23550 Schrenkiella parvula
Sp5g13230 Schrenkiella parvula
TAR371G0481 Trochodendron aralioides
TAR374G0191 Trochodendron aralioides
TAR622G0025 Trochodendron aralioides
TAR622G0924 Trochodendron aralioides
TAR629G2925 Trochodendron aralioides
THA.LOC104798920 Tarenaya hassleriana
THA.LOC104821531 Tarenaya hassleriana
THA.LOC104824608 Tarenaya hassleriana
Thecc.03G109300 Theobroma cacao
Thecc.03G137800 Theobroma cacao
Thhalv10005476m.g Eutrema salsugineum
Thhalv10010601m.g Eutrema salsugineum
TPR.G21591 Trifolium pratense
TPR.G2933 Trifolium pratense
TPR.G36352 Trifolium pratense
TWI14G0346 Tripterygium wilfordii
TWI18G0895 Tripterygium wilfordii
TWI23G0131 Tripterygium wilfordii
TWI39G0786 Tripterygium wilfordii
TWI75G1229 Tripterygium wilfordii
TWI81G0902 Tripterygium wilfordii
unitig_26.g10424 Utricularia gibba
unitig_749.g13329 Utricularia gibba
vmacro16079 Vaccinium macrocarpon
vmacro16745 Vaccinium macrocarpon
VMungo0251G1409 Vigna mungo
VMungo1127G0264 Vigna mungo
VMungo1127G0508 Vigna mungo
VMungo1127G2218 Vigna mungo
VMungo1383G0264 Vigna mungo
Zm00001eb064520 Zea mays
Zm00001eb132980 Zea mays
Zm00001eb210760 Zea mays

User provided reference genes

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