Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p28090 Brassica napus
A06p15800 Brassica napus
A09p20590 Brassica napus
Aa31LG5G3430 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3400 Anthoceros agrestis
Actinidia00796 Actinidia chinensis
Actinidia08464 Actinidia chinensis
Actinidia25182 Actinidia chinensis
Ah.13g071770 Amaranthus hybridus
AL1G32390 Arabidopsis lyrata
AL8G16280 Arabidopsis lyrata
Aqoxy2G03456 Aquilegia oxysepala
Aqoxy5G00408 Aquilegia oxysepala
Aqoxy5G00409 Aquilegia oxysepala
Aqoxy5G00410 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BH7WK9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KM44SA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P5HFKM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RQXR90 Arachis hypogaea
AT1G19670 Arabidopsis thaliana
AT5G43860 Arabidopsis thaliana
ATR0665G050 Amborella trichopoda
ATR0665G125 Amborella trichopoda
ATR0665G321 Amborella trichopoda
Atru.chr4.2381 Acer truncatum
Atru.chr4.2405 Acer truncatum
Atru.chr5.1506 Acer truncatum
Atru.ctg752_3.15 Acer truncatum
AUR62010545 Chenopodium quinoa
AUR62010546 Chenopodium quinoa
AUR62017347 Chenopodium quinoa
AUR62017349 Chenopodium quinoa
AUR62017350 Chenopodium quinoa
AUR62024085 Chenopodium quinoa
AUR62034689 Chenopodium quinoa
BcaB07g30554 Brassica carinata
BcaB07g30999 Brassica carinata
BcaC03g16610 Brassica carinata
BcaC04g21898 Brassica carinata
BolC2t10478H Brassica oleracea
BolC2t10484H Brassica oleracea
BolC5t30519H Brassica oleracea
BolC9t55506H Brassica oleracea
BraA02t07845Z Brassica rapa
BraA06t24690Z Brassica rapa
BraA09t37665Z Brassica rapa
C02p44390 Brassica napus
C05p18110 Brassica napus
C09p26030 Brassica napus
CAN.G1094.13 Capsicum annuum
CAN.G1572.3 Capsicum annuum
CAN.G231.15 Capsicum annuum
CAN.G231.16 Capsicum annuum
CAN.G771.6 Capsicum annuum
CANSAT11G1189 Cannabis sativa
CANSAT78G1821 Cannabis sativa
CARHR020190 Cardamine hirsuta
CARHR179570 Cardamine hirsuta
Carub.0001s1921 Capsella rubella
Carub.0008s0475 Capsella rubella
CBR_g50396 Chara braunii
Cc01_g19080 Coffea canephora
Cc03_g04230 Coffea canephora
Cc03_g04420 Coffea canephora
Cc05_g03030 Coffea canephora
CDE02G2392 Ceratophyllum demersum
CDE05G3068 Ceratophyllum demersum
Cfa008453 Carpinus fangiana
Ciclev10005453m.g Citrus clementina
Ciclev10021095m.g Citrus clementina
Ciclev10021103m.g Citrus clementina
Ciclev10024279m.g Citrus clementina
CiPaw.01G195900 Carya illinoinensis
CiPaw.02G121500 Carya illinoinensis
ClCG00G002890 Citrullus lanatus
ClCG06G006460 Citrullus lanatus
ClCG07G000460 Citrullus lanatus
COL.COLO4_09199 Corchorus olitorius
COL.COLO4_21558 Corchorus olitorius
Cpa.g.sc44.117 Carica papaya
CsaV3_2G013440 Cucumis sativus L.
CsaV3_2G013640 Cucumis sativus L.
CsaV3_5G025230 Cucumis sativus L.
CSS0004684 Camellia sinensis var. sinensis
CSS0028283 Camellia sinensis var. sinensis
CSS0033432 Camellia sinensis var. sinensis
CSS0035004 Camellia sinensis var. sinensis
CSS0042634 Camellia sinensis var. sinensis
DCAR_005858 Daucus carota
DCAR_024190 Daucus carota
Dinv14041 Davidia involucrata
Dinv14042 Davidia involucrata
Dinv22508 Davidia involucrata
Duzib052G0105 Durio zibethinus
Duzib052G0132 Durio zibethinus
Duzib133G0577 Durio zibethinus
Duzib138G1335 Durio zibethinus
ECA236G1644 Erigeron canadensis
ECA236G4228 Erigeron canadensis
ECA247G0320 Erigeron canadensis
EL10Ac2g03908 Beta vulgaris
EL10Ac3g06447 Beta vulgaris
EL10Ac5g12663 Beta vulgaris
Eucgr.B01020 Eucalyptus grandis
Eucgr.B01021 Eucalyptus grandis
Eucgr.B01022 Eucalyptus grandis
Eucgr.B01023 Eucalyptus grandis
Eucgr.L03228 Eucalyptus grandis
FAN12G3816 Fragaria x ananassa
FAN15G1443 Fragaria x ananassa
FAN15G3311 Fragaria x ananassa
FAN17G0413 Fragaria x ananassa
FAN24G1324 Fragaria x ananassa
FAN27G0116 Fragaria x ananassa
FAN27G0293 Fragaria x ananassa
FAN27G0610 Fragaria x ananassa
FvH4_2g23050 Fragaria vesca
FvH4_2g23051 Fragaria vesca
FvH4_4g00030 Fragaria vesca
FvH4_4g00040 Fragaria vesca
FvH4_4g00050 Fragaria vesca
FvH4_4g01061 Fragaria vesca
Glyma.07G096800 Glycine max
Glyma.07G096900 Glycine max
Glyma.07G096950 Glycine max
Glyma.07G097000 Glycine max
Glyma.09G181000 Glycine max
Glyma.10G003200 Glycine max
Gohir.A08G187200 Gossypium hirsutum
Gohir.A10G124100 Gossypium hirsutum
Gohir.D08G205500 Gossypium hirsutum
Gohir.D10G152933 Gossypium hirsutum
Gorai.004G217500 Gossypium raimondii
Gorai.011G170100 Gossypium raimondii
GSVIVG01001205001 Vitis vinifera
GSVIVG01001207001 Vitis vinifera
GSVIVG01001210001 Vitis vinifera
GSVIVG01018036001 Vitis vinifera
HanXRQChr01g0005461 Helianthus annuus
HanXRQChr01g0005551 Helianthus annuus
HanXRQChr05g0137091 Helianthus annuus
HanXRQChr17g0534671 Helianthus annuus
Haze_06516 Corylus avellana
Haze_06526 Corylus avellana
Haze_11225 Corylus avellana
Hma1.2p1_0172F.1_g075900 Hydrangea macrophylla
Hma1.2p1_0549F.1_g176950 Hydrangea macrophylla
HPP92_024353 Vanilla planifolia
HPP92_024354 Vanilla planifolia
Hund11125 Selenicereus undatus
Hund11126 Selenicereus undatus
Hund12140 Selenicereus undatus
Lalb_Chr19g0127911 Lupinus albus
Lalb_Chr19g0127931 Lupinus albus
Lj2A1166T42 Lonicera japonica
Lj2g0003105 Lotus japonicus
Lj5g0001502 Lotus japonicus
Lj6A644T31 Lonicera japonica
Lj6C645T4 Lonicera japonica
Lj6g0025608 Lotus japonicus
Lj6P644T21 Lonicera japonica
Lsat_1_v5_gn_8_66120 Lactuca sativa
Lsat_1_v5_gn_8_66180 Lactuca sativa
Manes.01G204500 Manihot esculenta
Manes.03G173700 Manihot esculenta
Manes.05G081000 Manihot esculenta
Manes.05G081300 Manihot esculenta
Mapoly0008s0176 Marchantia polymorpha
Mapoly0008s0177 Marchantia polymorpha
Mapoly0008s0178 Marchantia polymorpha
Mapoly0050s0025 Marchantia polymorpha
Mapoly0050s0026 Marchantia polymorpha
MBI01_g45161_MAGBIO Magnolia biondii
MBI11_g12660_MAGBIO Magnolia biondii
MD03G1259000 Malus domestica
MD03G1259100 Malus domestica
MD11G1279400 Malus domestica
MD13G1198800 Malus domestica
MD16G1198900 Malus domestica
MD16G1199000 Malus domestica
Medtr1g041385 Medicago truncatula
Medtr1g041390 Medicago truncatula
Medtr6g082500 Medicago truncatula
MELO3C002961.2 Cucumis melo
MELO3C014286.2 Cucumis melo
MELO3C014304.2 Cucumis melo
Migut.D00581 Erythranthe guttata
Migut.G00380 Erythranthe guttata
Migut.O00579 Erythranthe guttata
MSTRG.12477 Avicennia marina
MSTRG.9952 Avicennia marina
Nitab4.5_0000252g0240 Nicotiana tabacum
Nitab4.5_0000321g0220 Nicotiana tabacum
Nitab4.5_0000871g0040 Nicotiana tabacum
Nitab4.5_0004412g0010 Nicotiana tabacum
Nitab4.5_0004743g0040 Nicotiana tabacum
Nitab4.5_0011519g0010 Nicotiana tabacum
Nitab4.5_0011519g0020 Nicotiana tabacum
Nn1g02437 Nelumbo nucifera
Nn1g02438 Nelumbo nucifera
Nn6g34156 Nelumbo nucifera
Oeu015671.1 Olea europaea
Oeu017774.1 Olea europaea
Oeu035740.1 Olea europaea
Os02g0286700 Oryza sativa ssp. japonica
Os10g0419600 Oryza sativa ssp. japonica
Peaxi162Scf00192g01618 Petunia axillaris
Peaxi162Scf00230g00038 Petunia axillaris
Peaxi162Scf00783g00012 Petunia axillaris
PGR142G1644 Punica granatum
PGR142G3051 Punica granatum
PGSC0003DMG400006452 Solanum tuberosum
PGSC0003DMG400016268 Solanum tuberosum
PGSC0003DMG400019347 Solanum tuberosum
PGSC0003DMG400021814 Solanum tuberosum
Phvul.004G154100 Phaseolus vulgaris
Phvul.007G278100 Phaseolus vulgaris
Potri.005G214100 Populus trichocarpa
Potri.005G214200 Populus trichocarpa
Potri.010G082300 Populus trichocarpa
Pp3c20_7990 Physcomitrium patens
Prupe.1G020600 Prunus persica
Prupe.8G235600 Prunus persica
Psat1g035200 Pisum sativum
Psat6g103560 Pisum sativum
PSO017G2211 Papaver somniferum
PSO170G4947 Papaver somniferum
PSO210G0891 Papaver somniferum
PSO210G7048 Papaver somniferum
PSO675G2441 Papaver somniferum
PSO832G2818 Papaver somniferum
QL05p038725 Quercus lobata
QL06p001177 Quercus lobata
QL12p041679 Quercus lobata
RcHm_v2.0_Chr6g0290141 Rosa chinensis
Rhsim02G0028600 Rhododendron simsii
Rhsim13G0028300 Rhododendron simsii
RhsimUnG0024600 Rhododendron simsii
Sabra05G0163700 Salix brachista
Sabra08G0119700 Salix brachista
Sabra10G0060900 Salix brachista
SalBow2G0430 Salvia bowleyana
Sc13g0004700 Simmondsia chinensis
Sc19g0003970 Simmondsia chinensis
Sed0022710 Sechium edule
Sed0026619 Sechium edule
SEGI_15049 Sequoiadendron giganteum
SEGI_16713 Sequoiadendron giganteum
SEGI_17532 Sequoiadendron giganteum
SEGI_20131 Sequoiadendron giganteum
SEGI_24082 Sequoiadendron giganteum
SEGI_36532 Sequoiadendron giganteum
SEGI_38330 Sequoiadendron giganteum
SGA_v2.0_scaffold247G44854 Striga asiatica
SGA_v2.0_scaffold353G49721 Striga asiatica
SGA_v2.0_scaffold3G01522 Striga asiatica
SGA_v2.0_scaffold42G16113 Striga asiatica
SMO347G0622 Selaginella moellendorffii
SMO347G0663 Selaginella moellendorffii
SMO358G0466 Selaginella moellendorffii
Solyc06g053980.3 Solanum lycopersicum
Solyc09g065620.3 Solanum lycopersicum
Solyc09g082600.3 Solanum lycopersicum
Solyc12g005300.2 Solanum lycopersicum
Sopen06g019120 Solanum pennellii
Sopen09g027370 Solanum pennellii
Sopen09g031460 Solanum pennellii
Sopen12g001280 Solanum pennellii
Sp1g17510 Schrenkiella parvula
Sp2g08660 Schrenkiella parvula
TAR362G0227 Trochodendron aralioides
TAR633G0960 Trochodendron aralioides
TAR636G0339 Trochodendron aralioides
TAR636G3074 Trochodendron aralioides
THA.LOC104801988 Tarenaya hassleriana
Thecc.04G237900 Theobroma cacao
Thhalv10003248m.g Eutrema salsugineum
Thhalv10008201m.g Eutrema salsugineum
TPR.G18666 Trifolium pratense
TPR.G19819 Trifolium pratense
TPR.G29485 Trifolium pratense
TPR.G32760 Trifolium pratense
TWI18G1343 Tripterygium wilfordii
TWI32G0985 Tripterygium wilfordii
TWI73G0082 Tripterygium wilfordii
unitig_32.g10822 Utricularia gibba
vmacro02608 Vaccinium macrocarpon
vmacro15369 Vaccinium macrocarpon
VMungo0464G1272 Vigna mungo
VMungo0464G1317 Vigna mungo
VMungo0720G0724 Vigna mungo
Zm00001eb039350 Zea mays
Zm00001eb047780 Zea mays
Zm00001eb307720 Zea mays

User provided reference genes

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