Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p44220 Brassica napus
A04p09170 Brassica napus
A05p14350 Brassica napus
A05p14380 Brassica napus
Aa31sc134G10 Aethionema arabicum
Aa31sc565G10 Aethionema arabicum
Aa31sc60G130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1661 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4067 Anthoceros agrestis
Actinidia16426 Actinidia chinensis
Actinidia20362 Actinidia chinensis
Actinidia29874 Actinidia chinensis
Actinidia34523 Actinidia chinensis
Ah.03g140230 Amaranthus hybridus
Ah.03g142320 Amaranthus hybridus
Ah.12g064970 Amaranthus hybridus
AL6G33390 Arabidopsis lyrata
AL9U11810 Arabidopsis lyrata
Aqoxy3G04331 Aquilegia oxysepala
Aqoxy6G02598 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2HB33B Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.37ANK5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.577AC6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7G6K90 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DN6Q8Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LY0THA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NIG821 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q4LQ7J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y06RFV Arachis hypogaea
AT4G12790 Arabidopsis thaliana
AT5G22370 Arabidopsis thaliana
ATR0681G256 Amborella trichopoda
ATR0716G017 Amborella trichopoda
ATR0753G108 Amborella trichopoda
Atru.chr13.837 Acer truncatum
Atru.chr6.474 Acer truncatum
AUR62008457 Chenopodium quinoa
AUR62008627 Chenopodium quinoa
AUR62021638 Chenopodium quinoa
AUR62022473 Chenopodium quinoa
AUR62033144 Chenopodium quinoa
AUR62037414 Chenopodium quinoa
BcaB02g10377 Brassica carinata
BcaB03g16149 Brassica carinata
BcaB08g34457 Brassica carinata
BcaC01g03221 Brassica carinata
BcaC02g09468 Brassica carinata
BcaC02g11214 Brassica carinata
BcaC05g29648 Brassica carinata
BcaC07g40589 Brassica carinata
BolC3t17747H Brassica oleracea
BolC4t23446H Brassica oleracea
BolC4t25890H Brassica oleracea
BraA03t13551Z Brassica rapa
BraA04t16610Z Brassica rapa
BraA05t20364Z Brassica rapa
BraA05t20366Z Brassica rapa
C01p25920 Brassica napus
C03p54610 Brassica napus
C04p19130 Brassica napus
C04p43130 Brassica napus
C07p36580 Brassica napus
C09p04080 Brassica napus
CAN.G2034.3 Capsicum annuum
CAN.G724.29 Capsicum annuum
CANSAT35G1200 Cannabis sativa
CANSAT54G1334 Cannabis sativa
CANSAT54G3057 Cannabis sativa
CARHR085170 Cardamine hirsuta
CARHR191160 Cardamine hirsuta
CARHR218080 Cardamine hirsuta
Carub.0006s2012 Capsella rubella
Carub.0007s3003 Capsella rubella
Ca_02473_v3 Cicer arietinum L.
Ca_16270_v3 Cicer arietinum L.
CBR_g16045 Chara braunii
CBR_g26460 Chara braunii
Cc04_g10330 Coffea canephora
Cc10_g05000 Coffea canephora
CDE03G0519 Ceratophyllum demersum
CDE04G1029 Ceratophyllum demersum
Cfa010632 Carpinus fangiana
Cfa013773 Carpinus fangiana
Cfa025501 Carpinus fangiana
Ciclev10032421m.g Citrus clementina
CiPaw.07G174400 Carya illinoinensis
CiPaw.13G058300 Carya illinoinensis
ClCG05G020630 Citrullus lanatus
ClCG09G007880 Citrullus lanatus
COL.COLO4_28501 Corchorus olitorius
COL.COLO4_29923 Corchorus olitorius
Cpa.g.sc142.33 Carica papaya
Cpa.g.sc8.26 Carica papaya
Cre02.g081200 Chlamydomonas reinhardtii
Cre04.g212650 Chlamydomonas reinhardtii
CsaV3_4G035080 Cucumis sativus L.
CsaV3_7G027190 Cucumis sativus L.
CSS0004322 Camellia sinensis var. sinensis
CSS0013505 Camellia sinensis var. sinensis
CSS0022181 Camellia sinensis var. sinensis
CSS0023672 Camellia sinensis var. sinensis
CSS0033382 Camellia sinensis var. sinensis
CSS0034812 Camellia sinensis var. sinensis
CSS0041455 Camellia sinensis var. sinensis
DCAR_002068 Daucus carota
DCAR_012710 Daucus carota
DCAR_018604 Daucus carota
Dinv04044 Davidia involucrata
Dinv04656 Davidia involucrata
Dinv28782 Davidia involucrata
Duzib093G2145 Durio zibethinus
Duzib116G0103 Durio zibethinus
Duzib133G0945 Durio zibethinus
Duzib138G0576 Durio zibethinus
ECA232G3417 Erigeron canadensis
ECA232G3607 Erigeron canadensis
ECA236G3045 Erigeron canadensis
ECA240G2488 Erigeron canadensis
ECA247G0029 Erigeron canadensis
EL10Ac1g02374 Beta vulgaris
EL10Ac6g13986 Beta vulgaris
Eucgr.F02247 Eucalyptus grandis
Eucgr.F02248 Eucalyptus grandis
Eucgr.H00684 Eucalyptus grandis
FAN02G0377 Fragaria x ananassa
FAN05G5505 Fragaria x ananassa
FAN14G3055 Fragaria x ananassa
FAN15G1368 Fragaria x ananassa
FAN20G0022 Fragaria x ananassa
FAN24G1428 Fragaria x ananassa
FAN27G0731 Fragaria x ananassa
FvH4_2g33040 Fragaria vesca
FvH4_6g36140 Fragaria vesca
FvH4_6g36141 Fragaria vesca
FvH4_6g37261 Fragaria vesca
Glyma.04G046100 Glycine max
Glyma.06G046900 Glycine max
Glyma.08G288700 Glycine max
Gohir.A06G024300 Gossypium hirsutum
Gohir.A07G089100 Gossypium hirsutum
Gohir.A11G144600 Gossypium hirsutum
Gohir.D06G021400 Gossypium hirsutum
Gohir.D07G094000 Gossypium hirsutum
Gohir.D11G151633 Gossypium hirsutum
Gorai.001G100800 Gossypium raimondii
Gorai.007G161900 Gossypium raimondii
Gorai.010G026000 Gossypium raimondii
GSVIVG01001907001 Vitis vinifera
GSVIVG01009339001 Vitis vinifera
HanXRQChr05g0159331 Helianthus annuus
HanXRQChr08g0231361 Helianthus annuus
HanXRQChr12g0373001 Helianthus annuus
Haze_03574 Corylus avellana
Haze_22431 Corylus avellana
Haze_26372 Corylus avellana
Haze_27366 Corylus avellana
Hma1.2p1_0852F.1_g228560 Hydrangea macrophylla
Hma1.2p1_1289F.1_g273370 Hydrangea macrophylla
HPP92_006935 Vanilla planifolia
HPP92_011874 Vanilla planifolia
Hund05297 Selenicereus undatus
Hund09474 Selenicereus undatus
Lalb_Chr01g0020781 Lupinus albus
Lalb_Chr03g0037871 Lupinus albus
Lalb_Chr23g0267541 Lupinus albus
Lj1g0012643 Lotus japonicus
Lj2C1109G24 Lonicera japonica
Lj4C71G18 Lonicera japonica
Lj6g0014346 Lotus japonicus
Lj8C156G11 Lonicera japonica
Lsat_1_v5_gn_4_161560 Lactuca sativa
Lsat_1_v5_gn_9_17160 Lactuca sativa
Manes.12G057506 Manihot esculenta
Manes.12G057903 Manihot esculenta
Manes.12G058106 Manihot esculenta
Manes.12G058205 Manihot esculenta
Manes.12G058907 Manihot esculenta
Manes.18G046900 Manihot esculenta
Mapoly0032s0094 Marchantia polymorpha
Mapoly0043s0065 Marchantia polymorpha
MBI06_g35524_MAGBIO Magnolia biondii
MBI19_g03264_MAGBIO Magnolia biondii
MCO01G727 Micromonas commoda
MCO09G761 Micromonas commoda
MD08G1081600 Malus domestica
MD09G1158900 Malus domestica
MD09G1159000 Malus domestica
MD15G1068400 Malus domestica
MD17G1145200 Malus domestica
Medtr3g080040 Medicago truncatula
Medtr5g089950 Medicago truncatula
Medtr8g062340 Medicago truncatula
MELO3C015718.2 Cucumis melo
MELO3C016822.2 Cucumis melo
Migut.C01163 Erythranthe guttata
Migut.D00763 Erythranthe guttata
MSTRG.18513 Avicennia marina
MSTRG.25034 Avicennia marina
Nitab4.5_0000231g0320 Nicotiana tabacum
Nitab4.5_0000497g0180 Nicotiana tabacum
Nitab4.5_0001015g0010 Nicotiana tabacum
Nitab4.5_0003502g0130 Nicotiana tabacum
Nitab4.5_0003725g0080 Nicotiana tabacum
Nitab4.5_0013369g0010 Nicotiana tabacum
Nn8g38671 Nelumbo nucifera
Oeu003683.1 Olea europaea
Oeu053621.1 Olea europaea
Os02g0555000 Oryza sativa ssp. japonica
Os03g0337700 Oryza sativa ssp. japonica
Os03g0714400 Oryza sativa ssp. japonica
Peaxi162Scf00081g02227 Petunia axillaris
Peaxi162Scf00169g00008 Petunia axillaris
Peaxi162Scf00169g00012 Petunia axillaris
Peaxi162Scf00995g00325 Petunia axillaris
Peaxi162Scf02641g00002 Petunia axillaris
PGR031G2095 Punica granatum
PGR083G1673 Punica granatum
PGR119G0195 Punica granatum
PGSC0003DMG400010619 Solanum tuberosum
PGSC0003DMG400020294 Solanum tuberosum
Phvul.006G048300 Phaseolus vulgaris
Phvul.009G072100 Phaseolus vulgaris
Potri.014G015700 Populus trichocarpa
Potri.014G174200 Populus trichocarpa
Pp3c19_7220 Physcomitrium patens
Pp3c20_1680 Physcomitrium patens
PRCOL_00000639 Prasinoderma coloniale
PRCOL_00002035 Prasinoderma coloniale
Prupe.1G422300 Prunus persica
Prupe.3G166900 Prunus persica
Psat4g133760 Pisum sativum
Psat5g112120 Pisum sativum
PSO017G4753 Papaver somniferum
PSO063G3354 Papaver somniferum
PSO170G4140 Papaver somniferum
PSO339G4044 Papaver somniferum
PSO782G5218 Papaver somniferum
QL06p016631 Quercus lobata
QL11p010737 Quercus lobata
QL12p038161 Quercus lobata
RcHm_v2.0_Chr2g0150081 Rosa chinensis
RcHm_v2.0_Chr3g0481161 Rosa chinensis
RcHm_v2.0_Chr6g0309671 Rosa chinensis
RcHm_v2.0_Chr7g0223091 Rosa chinensis
Rhsim08G0093300 Rhododendron simsii
Sabra14G0009600 Salix brachista
Sabra14G0133500 Salix brachista
SalBow7G1193 Salvia bowleyana
Sc02g0007920 Simmondsia chinensis
Sc02g0007930 Simmondsia chinensis
Sc26g0001390 Simmondsia chinensis
Sed0019553 Sechium edule
Sed0020338 Sechium edule
Sed0021942 Sechium edule
SEGI_09812 Sequoiadendron giganteum
SEGI_20238 Sequoiadendron giganteum
SGA_v2.0_scaffold158G37507 Striga asiatica
SGA_v2.0_scaffold238G43957 Striga asiatica
SGA_v2.0_scaffold69G23153 Striga asiatica
SGA_v2.0_scaffold8G04485 Striga asiatica
SHI08418 Sapria himalayana
SHI10211 Sapria himalayana
SMO119G0294 Selaginella moellendorffii
SMO200G0002 Selaginella moellendorffii
SMO200G0096 Selaginella moellendorffii
Solyc04g077790.3 Solanum lycopersicum
Solyc09g020140.3 Solanum lycopersicum
Sopen04g031400 Solanum pennellii
Sopen09g013030 Solanum pennellii
Sp4g13660 Schrenkiella parvula
Sp7g09370 Schrenkiella parvula
TAR381G0970 Trochodendron aralioides
TAR636G0268 Trochodendron aralioides
THA.LOC104815388 Tarenaya hassleriana
THA.LOC104826642 Tarenaya hassleriana
Thecc.01G205600 Theobroma cacao
Thecc.08G088300 Theobroma cacao
Thhalv10003026m.g Eutrema salsugineum
Thhalv10017005m.g Eutrema salsugineum
Thhalv10025507m.g Eutrema salsugineum
TPR.G33879 Trifolium pratense
TPR.G33904 Trifolium pratense
TPR.G36301 Trifolium pratense
TPR.G36398 Trifolium pratense
TPR.G38550 Trifolium pratense
TWI53G1627 Tripterygium wilfordii
TWI56G0347 Tripterygium wilfordii
unitig_0.g794 Utricularia gibba
unitig_62.g23649 Utricularia gibba
vmacro14676 Vaccinium macrocarpon
vmacro18024 Vaccinium macrocarpon
VMungo0540G2305 Vigna mungo
VMungo1309G2121 Vigna mungo
Zm00001eb112910 Zea mays
Zm00001eb216170 Zea mays
Zm00001eb243750 Zea mays

User provided reference genes

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