Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p36790 Brassica napus
A03p23920 Brassica napus
A05p32330 Brassica napus
Aa31LG1G24810 Aethionema arabicum
Aa31LG8G4410 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.763 Anthoceros agrestis
Actinidia01065 Actinidia chinensis
Actinidia18507 Actinidia chinensis
Actinidia26429 Actinidia chinensis
Actinidia31727 Actinidia chinensis
Ah.05g177380 Amaranthus hybridus
Ah.07g201130 Amaranthus hybridus
AL3G30550 Arabidopsis lyrata
AL4G41670 Arabidopsis lyrata
Aqoxy5G02803 Aquilegia oxysepala
Aqoxy5G02877 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.39Z329 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5G75KN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E051EM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E0PE5U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GT5X5C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IDQN4N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VQU8DB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z0DKXY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZTJ4JW Arachis hypogaea
AT2G43030 Arabidopsis thaliana
AT3G17465 Arabidopsis thaliana
ATR0693G201 Amborella trichopoda
ATR0796G018 Amborella trichopoda
Atru.chr2.1621 Acer truncatum
Atru.chr4.3151 Acer truncatum
AUR62007379 Chenopodium quinoa
AUR62018609 Chenopodium quinoa
AUR62023332 Chenopodium quinoa
AUR62038001 Chenopodium quinoa
BcaB04g18943 Brassica carinata
BcaB04g20838 Brassica carinata
BcaB06g25841 Brassica carinata
BcaB06g29278 Brassica carinata
BcaC01g03762 Brassica carinata
BcaC01g05267 Brassica carinata
BcaC02g08597 Brassica carinata
BcaC02g11409 Brassica carinata
BcaC05g28788 Brassica carinata
BcaC09g48707 Brassica carinata
BcaNung06481 Brassica carinata
BolC1t04639H Brassica oleracea
BolC1t04644H Brassica oleracea
BolC3t15219H Brassica oleracea
BolC3t17164H Brassica oleracea
BolC3t17166H Brassica oleracea
BolC4t24932H Brassica oleracea
BolC4t26787H Brassica oleracea
BolC4t28636H Brassica oleracea
BolC5t33637H Brassica oleracea
BolC6t38344H Brassica oleracea
BraA01t03740Z Brassica rapa
BraA03t11607Z Brassica rapa
BraA05t22061Z Brassica rapa
C01p46710 Brassica napus
C01p46730 Brassica napus
C03p28540 Brassica napus
C03p48820 Brassica napus
C03p48850 Brassica napus
C05p48970 Brassica napus
CAN.G103.17 Capsicum annuum
CAN.G407.30 Capsicum annuum
CANSAT25G1467 Cannabis sativa
CANSAT78G0846 Cannabis sativa
CARHR092790 Cardamine hirsuta
CARHR138100 Cardamine hirsuta
CARHR283820 Cardamine hirsuta
Carub.0003s1719 Capsella rubella
Carub.0004s2551 Capsella rubella
Ca_06467_v3 Cicer arietinum L.
Ca_15285_v3 Cicer arietinum L.
Ca_15421_v3 Cicer arietinum L.
CBR_g23410 Chara braunii
CBR_g27892 Chara braunii
Cc02_g26530 Coffea canephora
Cc03_g00130 Coffea canephora
CDE01G0206 Ceratophyllum demersum
CDE01G0715 Ceratophyllum demersum
CDE06G1113 Ceratophyllum demersum
CDE08G1023 Ceratophyllum demersum
CDE12G0965 Ceratophyllum demersum
Cfa003703 Carpinus fangiana
Cfa015730 Carpinus fangiana
Ciclev10007196m.g Citrus clementina
Ciclev10032370m.g Citrus clementina
CiPaw.01G129200 Carya illinoinensis
CiPaw.02G048000 Carya illinoinensis
CiPaw.02G069200 Carya illinoinensis
ClCG05G006870 Citrullus lanatus
ClCG06G000570 Citrullus lanatus
COL.COLO4_21824 Corchorus olitorius
COL.COLO4_34516 Corchorus olitorius
Cpa.g.sc146.23 Carica papaya
Cpa.g.sc73.31 Carica papaya
Cre01.g022250 Chlamydomonas reinhardtii
Cre01.g050316 Chlamydomonas reinhardtii
Cre48.g761197 Chlamydomonas reinhardtii
CsaV3_3G015540 Cucumis sativus L.
CsaV3_6G006340 Cucumis sativus L.
CSS0000101 Camellia sinensis var. sinensis
CSS0028572 Camellia sinensis var. sinensis
CSS0028606 Camellia sinensis var. sinensis
CSS0028739 Camellia sinensis var. sinensis
CSS0030271 Camellia sinensis var. sinensis
CSS0045814 Camellia sinensis var. sinensis
DCAR_002551 Daucus carota
DCAR_029571 Daucus carota
Dinv18018 Davidia involucrata
Dinv29507 Davidia involucrata
Dinv43957 Davidia involucrata
Duzib128G1009 Durio zibethinus
Duzib212G0306 Durio zibethinus
ECA234G0777 Erigeron canadensis
ECA246G1461 Erigeron canadensis
EL10Ac1g00685 Beta vulgaris
EL10Ac5g11978 Beta vulgaris
Eucgr.D01115 Eucalyptus grandis
Eucgr.H04124 Eucalyptus grandis
FAN01G1771 Fragaria x ananassa
FAN03G3487 Fragaria x ananassa
FAN06G0218 Fragaria x ananassa
FAN07G0753 Fragaria x ananassa
FAN12G3762 Fragaria x ananassa
FAN17G2520 Fragaria x ananassa
FvH4_4g21510 Fragaria vesca
FvH4_7g08200 Fragaria vesca
Glyma.04G002300 Glycine max
Glyma.06G001800 Glycine max
Glyma.12G225000 Glycine max
Glyma.13G276300 Glycine max
Gohir.A02G058500 Gossypium hirsutum
Gohir.A13G159300 Gossypium hirsutum
Gohir.D02G064300 Gossypium hirsutum
Gohir.D13G164200 Gossypium hirsutum
Gorai.005G072600 Gossypium raimondii
Gorai.013G198500 Gossypium raimondii
GSVIVG01017688001 Vitis vinifera
GSVIVG01019355001 Vitis vinifera
HanXRQChr01g0008911 Helianthus annuus
HanXRQChr03g0088221 Helianthus annuus
HanXRQChr05g0149261 Helianthus annuus
HanXRQChr13g0409631 Helianthus annuus
Haze_00766 Corylus avellana
Haze_15784 Corylus avellana
Hma1.2p1_0013F.1_g007910 Hydrangea macrophylla
HPP92_010022 Vanilla planifolia
HPP92_015293 Vanilla planifolia
HPP92_026061 Vanilla planifolia
Hund04488 Selenicereus undatus
Hund14390 Selenicereus undatus
Hund17157 Selenicereus undatus
Lalb_Chr04g0247221 Lupinus albus
Lalb_Chr23g0264931 Lupinus albus
Lj1g0012726 Lotus japonicus
Lj3g0022905 Lotus japonicus
Lj6A701G45 Lonicera japonica
Lj9A617T61 Lonicera japonica
Lsat_1_v5_gn_4_42200 Lactuca sativa
Lsat_1_v5_gn_6_118081 Lactuca sativa
Manes.02G178300 Manihot esculenta
Manes.09G134000 Manihot esculenta
Mapoly0005s0275 Marchantia polymorpha
Mapoly0162s0018 Marchantia polymorpha
MBI13_g24903_MAGBIO Magnolia biondii
MBI18_g28942_MAGBIO Magnolia biondii
MCO03G352 Micromonas commoda
MCO04G432 Micromonas commoda
MD02G1230700 Malus domestica
MD05G1027700 Malus domestica
MD07G1082200 Malus domestica
MD10G1167900 Malus domestica
MD13G1139500 Malus domestica
MD16G1136200 Malus domestica
Medtr1g093060 Medicago truncatula
Medtr2g090370 Medicago truncatula
Medtr3g118210 Medicago truncatula
Medtr6g006970 Medicago truncatula
MELO3C006752.2 Cucumis melo
MELO3C022485.2 Cucumis melo
Migut.G00004 Erythranthe guttata
Migut.N01649 Erythranthe guttata
Migut.O00400 Erythranthe guttata
Migut.O00701 Erythranthe guttata
Migut.O00895 Erythranthe guttata
MSTRG.10168 Avicennia marina
MSTRG.4991 Avicennia marina
Nitab4.5_0000266g0150 Nicotiana tabacum
Nitab4.5_0000792g0230 Nicotiana tabacum
Nitab4.5_0001437g0040 Nicotiana tabacum
Nitab4.5_0002322g0100 Nicotiana tabacum
Nitab4.5_0004375g0030 Nicotiana tabacum
Nitab4.5_0005622g0030 Nicotiana tabacum
Nitab4.5_0006648g0050 Nicotiana tabacum
Nn3g17992 Nelumbo nucifera
Nn4g26701 Nelumbo nucifera
Oeu012217.1 Olea europaea
Oeu035504.2 Olea europaea
Oeu037631.1 Olea europaea
Oeu060722.1 Olea europaea
Os01g0251100 Oryza sativa ssp. japonica
Os02g0137200 Oryza sativa ssp. japonica
Peaxi162Scf00126g01027 Petunia axillaris
Peaxi162Scf01343g00156 Petunia axillaris
PGR004G1245 Punica granatum
PGR083G1235 Punica granatum
PGSC0003DMG400014202 Solanum tuberosum
PGSC0003DMG400015641 Solanum tuberosum
PGSC0003DMG401013065 Solanum tuberosum
PGSC0003DMG402013065 Solanum tuberosum
Phvul.005G012100 Phaseolus vulgaris
Phvul.009G117700 Phaseolus vulgaris
Potri.008G207000 Populus trichocarpa
Potri.010G002300 Populus trichocarpa
Potri.013G070100 Populus trichocarpa
Pp3c16_1020 Physcomitrium patens
Pp3c23_18210 Physcomitrium patens
Pp3c6_28830 Physcomitrium patens
PRCOL_00001976 Prasinoderma coloniale
PRCOL_00004909 Prasinoderma coloniale
Prupe.1G105200 Prunus persica
Prupe.2G107400 Prunus persica
Psat0s3953g0120 Pisum sativum
Psat1g056160 Pisum sativum
Psat5g001240 Pisum sativum
PSO210G1506 Papaver somniferum
PSO357G0010 Papaver somniferum
PSO541G1920 Papaver somniferum
PSO761G0243 Papaver somniferum
QL04p043483 Quercus lobata
QL04p078062 Quercus lobata
QL06p014217 Quercus lobata
QL08p048213 Quercus lobata
RcHm_v2.0_Chr1g0340951 Rosa chinensis
RcHm_v2.0_Chr4g0427531 Rosa chinensis
Rhsim04G0248300 Rhododendron simsii
Rhsim07G0048100 Rhododendron simsii
Rhsim10G0078600 Rhododendron simsii
Sabra08G0150200 Salix brachista
Sabra10G0001800 Salix brachista
Sabra13G0060800 Salix brachista
SalBow5G0142 Salvia bowleyana
SalBow5G0929 Salvia bowleyana
SalBow5G3525 Salvia bowleyana
SalBow8G2239 Salvia bowleyana
Sc18g0007250 Simmondsia chinensis
Sc26g0001950 Simmondsia chinensis
Sed0003205 Sechium edule
Sed0013689 Sechium edule
Sed0025255 Sechium edule
Sed0028101 Sechium edule
SEGI_07728 Sequoiadendron giganteum
SEGI_08522 Sequoiadendron giganteum
SEGI_24146 Sequoiadendron giganteum
SGA_v2.0_scaffold157G37389 Striga asiatica
SGA_v2.0_scaffold98G29370 Striga asiatica
SHI00050 Sapria himalayana
SMO115G0095 Selaginella moellendorffii
SMO119G0282 Selaginella moellendorffii
SMO223G0016 Selaginella moellendorffii
Solyc01g057250.2 Solanum lycopersicum
Solyc03g117320.4 Solanum lycopersicum
Solyc06g051200.3 Solanum lycopersicum
Sopen01g021790 Solanum pennellii
Sopen03g036210 Solanum pennellii
Sopen06g017110 Solanum pennellii
Sp3g15640 Schrenkiella parvula
Sp4g25160 Schrenkiella parvula
TAR365G0152 Trochodendron aralioides
TAR365G0404 Trochodendron aralioides
TAR636G1706 Trochodendron aralioides
THA.LOC104805803 Tarenaya hassleriana
THA.LOC104815360 Tarenaya hassleriana
Thecc.04G313100 Theobroma cacao
Thecc.05G235900 Theobroma cacao
Thhalv10017066m.g Eutrema salsugineum
Thhalv10021142m.g Eutrema salsugineum
TPR.G18850 Trifolium pratense
TPR.G2257 Trifolium pratense
TPR.G38511 Trifolium pratense
TWI60G0209 Tripterygium wilfordii
TWI75G1791 Tripterygium wilfordii
unitig_0.g1362 Utricularia gibba
unitig_61.g26435 Utricularia gibba
unitig_8.g3105 Utricularia gibba
vmacro08012 Vaccinium macrocarpon
vmacro13602 Vaccinium macrocarpon
VMungo0331G0401 Vigna mungo
VMungo0647G2311 Vigna mungo
VMungo1080G0714 Vigna mungo
VMungo1309G1068 Vigna mungo
Zm00001eb231800 Zea mays
Zm00001eb333790 Zea mays

User provided reference genes

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