Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p09230 Brassica napus
A08p32860 Brassica napus
A09p15910 Brassica napus
A09p63880 Brassica napus
Aa31LG1G2260 Aethionema arabicum
Aa31LG2G380 Aethionema arabicum
Actinidia02082 Actinidia chinensis
Actinidia02083 Actinidia chinensis
Actinidia13556 Actinidia chinensis
Actinidia14470 Actinidia chinensis
Actinidia25035 Actinidia chinensis
Ah.12g058130 Amaranthus hybridus
AL1G23710 Arabidopsis lyrata
AL2G12860 Arabidopsis lyrata
Aqoxy7G00630 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.S6IS8L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YW0R51 Arachis hypogaea
AT1G12380 Arabidopsis thaliana
AT1G62870 Arabidopsis thaliana
ATR0109G012 Amborella trichopoda
ATR0147G001 Amborella trichopoda
ATR0153G006 Amborella trichopoda
ATR0153G008 Amborella trichopoda
ATR0153G009 Amborella trichopoda
ATR0153G015 Amborella trichopoda
ATR1094G007 Amborella trichopoda
ATR1094G014 Amborella trichopoda
ATR1132G070 Amborella trichopoda
Atru.chr1.640 Acer truncatum
Atru.chr9.1451 Acer truncatum
AUR62010521 Chenopodium quinoa
AUR62017378 Chenopodium quinoa
BcaB08g34280 Brassica carinata
BcaNung07218 Brassica carinata
BolC5t29824H Brassica oleracea
BolC8t49168H Brassica oleracea
BolC8t52282H Brassica oleracea
BolC9t54822H Brassica oleracea
BraA06t24110Z Brassica rapa
BraA08t35208Z Brassica rapa
BraA09t37227Z Brassica rapa
BraA09t41736Z Brassica rapa
C05p10800 Brassica napus
C08p15400 Brassica napus
C08p47420 Brassica napus
C09p19150 Brassica napus
CAN.G277.7 Capsicum annuum
CAN.G630.66 Capsicum annuum
CANSAT21G1329 Cannabis sativa
CANSAT56G2561 Cannabis sativa
CARHR012670 Cardamine hirsuta
CARHR048880 Cardamine hirsuta
Ca_12284_v3 Cicer arietinum L.
Ca_25234_v3 Cicer arietinum L.
Cc02_g03930 Coffea canephora
Cc08_g13310 Coffea canephora
CDE02G2142 Ceratophyllum demersum
CDE04G2071 Ceratophyllum demersum
CDE04G3437 Ceratophyllum demersum
CDE09G0151 Ceratophyllum demersum
CDE11G0378 Ceratophyllum demersum
CDE12G0846 Ceratophyllum demersum
Cfa002509 Carpinus fangiana
Cfa004755 Carpinus fangiana
Cfa005947 Carpinus fangiana
Cfa008072 Carpinus fangiana
Cfa008226 Carpinus fangiana
Cfa008228 Carpinus fangiana
Cfa012023 Carpinus fangiana
Ciclev10004384m.g Citrus clementina
Ciclev10023497m.g Citrus clementina
CiPaw.03G096700 Carya illinoinensis
CiPaw.04G062500 Carya illinoinensis
CiPaw.11G146800 Carya illinoinensis
CiPaw.12G104300 Carya illinoinensis
ClCG01G003600 Citrullus lanatus
ClCG01G005130 Citrullus lanatus
ClCG10G003200 Citrullus lanatus
COL.COLO4_14176 Corchorus olitorius
COL.COLO4_23859 Corchorus olitorius
COL.COLO4_30273 Corchorus olitorius
Cpa.g.sc29.81 Carica papaya
Cpa.g.sc3.277 Carica papaya
Cre01.g005543 Chlamydomonas reinhardtii
Cre39.g760047 Chlamydomonas reinhardtii
CsaV3_3G003240 Cucumis sativus L.
CsaV3_5G003700 Cucumis sativus L.
CsaV3_5G005410 Cucumis sativus L.
CSS0015508 Camellia sinensis var. sinensis
CSS0020830 Camellia sinensis var. sinensis
CSS0027620 Camellia sinensis var. sinensis
CSS0034560 Camellia sinensis var. sinensis
DCAR_000858 Daucus carota
DCAR_005664 Daucus carota
Dinv22981 Davidia involucrata
Dinv28537 Davidia involucrata
Dinv37757 Davidia involucrata
Dinv39071 Davidia involucrata
Dinv39072 Davidia involucrata
Duzib068G0476 Durio zibethinus
Duzib068G1053 Durio zibethinus
Duzib205G0224 Durio zibethinus
Duzib205G0339 Durio zibethinus
ECA238G3236 Erigeron canadensis
ECA240G3263 Erigeron canadensis
ECA246G3219 Erigeron canadensis
EL10Ac5g12632 Beta vulgaris
FAN01G1121 Fragaria x ananassa
FAN01G2720 Fragaria x ananassa
FAN03G1528 Fragaria x ananassa
FAN03G3148 Fragaria x ananassa
FAN04G0144 Fragaria x ananassa
FAN06G1175 Fragaria x ananassa
FAN06G2054 Fragaria x ananassa
FAN06G3721 Fragaria x ananassa
FAN08G2625 Fragaria x ananassa
FAN10G0225 Fragaria x ananassa
FAN12G0919 Fragaria x ananassa
FAN13G1080 Fragaria x ananassa
FAN18G2041 Fragaria x ananassa
FvH4_5g00791 Fragaria vesca
FvH4_7g28141 Fragaria vesca
Glyma.01G212400 Glycine max
Glyma.05G053200 Glycine max
Glyma.09G154100 Glycine max
Glyma.10G177600 Glycine max
Glyma.11G029400 Glycine max
Glyma.16G204700 Glycine max
Glyma.17G135600 Glycine max
Glyma.20G212600 Glycine max
Gohir.A03G011550 Gossypium hirsutum
Gohir.A08G174250 Gossypium hirsutum
Gohir.A12G264150 Gossypium hirsutum
Gohir.D03G158350 Gossypium hirsutum
Gohir.D08G192950 Gossypium hirsutum
Gohir.D12G264366 Gossypium hirsutum
Gorai.003G166900 Gossypium raimondii
Gorai.004G203100 Gossypium raimondii
Gorai.008G283800 Gossypium raimondii
GSVIVG01004906001 Vitis vinifera
GSVIVG01018521001 Vitis vinifera
GSVIVG01019641001 Vitis vinifera
HanXRQChr03g0087541 Helianthus annuus
HanXRQChr06g0164621 Helianthus annuus
HanXRQChr07g0188371 Helianthus annuus
HanXRQChr07g0206281 Helianthus annuus
HanXRQChr13g0417321 Helianthus annuus
HanXRQChr14g0461691 Helianthus annuus
HanXRQChr17g0550451 Helianthus annuus
Haze_09045 Corylus avellana
Haze_13830 Corylus avellana
Hma1.2p1_0099F.1_g048960 Hydrangea macrophylla
Hma1.2p1_0138F.1_g063100 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078750 Hydrangea macrophylla
Hma1.2p1_0849F.1_g228020 Hydrangea macrophylla
Hma1.2p1_1623F.1_g294160 Hydrangea macrophylla
Hma1.2p1_1623F.1_g294186 Hydrangea macrophylla
HPP92_014673 Vanilla planifolia
HPP92_020953 Vanilla planifolia
HPP92_020978 Vanilla planifolia
HPP92_020979 Vanilla planifolia
HPP92_027175 Vanilla planifolia
HPP92_027176 Vanilla planifolia
Hund14660 Selenicereus undatus
Lalb_Chr03g0033141 Lupinus albus
Lalb_Chr05g0225341 Lupinus albus
Lalb_Chr09g0324531 Lupinus albus
Lalb_Chr19g0131351 Lupinus albus
Lj2E207T1 Lonicera japonica
Lj2g0005696 Lotus japonicus
Lj2g0014696 Lotus japonicus
Lj4g0019100 Lotus japonicus
Lj8C37T2 Lonicera japonica
Lsat_1_v5_gn_0_32080 Lactuca sativa
Lsat_1_v5_gn_2_129441 Lactuca sativa
Lsat_1_v5_gn_3_3580 Lactuca sativa
Lsat_1_v5_gn_3_63160 Lactuca sativa
Lsat_1_v5_gn_4_141561 Lactuca sativa
Lsat_1_v5_gn_9_3920 Lactuca sativa
Manes.01G072200 Manihot esculenta
Manes.02G032900 Manihot esculenta
Manes.06G137600 Manihot esculenta
MBI04_g21740_MAGBIO Magnolia biondii
MBI04_g21741_MAGBIO Magnolia biondii
MBI04_g21742_MAGBIO Magnolia biondii
MBI04_g35273_MAGBIO Magnolia biondii
MBI04_g44619_MAGBIO Magnolia biondii
MBI04_g44910_MAGBIO Magnolia biondii
MBI04_g44911_MAGBIO Magnolia biondii
MBI12_g10763_MAGBIO Magnolia biondii
MD01G1185300 Malus domestica
MD04G1078600 Malus domestica
MD07G1257500 Malus domestica
MELO3C005415.2 Cucumis melo
MELO3C005585.2 Cucumis melo
MELO3C013990.2 Cucumis melo
Migut.A00840 Erythranthe guttata
Migut.E01134 Erythranthe guttata
Migut.F00435 Erythranthe guttata
MSTRG.12054 Avicennia marina
MSTRG.12055 Avicennia marina
MSTRG.27172 Avicennia marina
MSTRG.8804 Avicennia marina
Nitab4.5_0000072g0410 Nicotiana tabacum
Nitab4.5_0004402g0010 Nicotiana tabacum
Nitab4.5_0009905g0010 Nicotiana tabacum
Nn1g01239 Nelumbo nucifera
Nn1g02746 Nelumbo nucifera
Nn1g03956 Nelumbo nucifera
Nn1g05826 Nelumbo nucifera
Nn4g26394 Nelumbo nucifera
Nn5g30647 Nelumbo nucifera
Oeu015607.1 Olea europaea
Oeu025555.1 Olea europaea
Oeu025557.1 Olea europaea
Oeu039212.1 Olea europaea
Oeu056792.1 Olea europaea
Os02g0450000 Oryza sativa ssp. japonica
Os04g0261400 Oryza sativa ssp. japonica
Peaxi162Scf00271g00017 Petunia axillaris
Peaxi162Scf01372g00011 Petunia axillaris
PGR031G3539 Punica granatum
PGR042G3196 Punica granatum
PGSC0003DMG400003931 Solanum tuberosum
PGSC0003DMG400031021 Solanum tuberosum
Potri.001G116600 Populus trichocarpa
Potri.003G115900 Populus trichocarpa
Potri.012G129100 Populus trichocarpa
Potri.015G130800 Populus trichocarpa
Pp3c17_10930 Physcomitrium patens
Pp3c1_28260 Physcomitrium patens
Pp3c1_41800 Physcomitrium patens
Pp3c2_7170 Physcomitrium patens
Pp3c2_870 Physcomitrium patens
Prupe.2G281700 Prunus persica
Prupe.5G080400 Prunus persica
Psat1g115240 Pisum sativum
Psat4g068480 Pisum sativum
PSO017G6081 Papaver somniferum
PSO170G4819 Papaver somniferum
PSO478G4774 Papaver somniferum
PSO782G2408 Papaver somniferum
QL09p018728 Quercus lobata
QL12p015145 Quercus lobata
RcHm_v2.0_Chr1g0375071 Rosa chinensis
RcHm_v2.0_Chr7g0201331 Rosa chinensis
Rhsim03G0171100 Rhododendron simsii
Rhsim11G0001600 Rhododendron simsii
Sabra01G0089500 Salix brachista
Sabra03G0080400 Salix brachista
Sabra12G0097000 Salix brachista
Sabra15G0144100 Salix brachista
Sc01g0009180 Simmondsia chinensis
Sc07g0009450 Simmondsia chinensis
Sed0014946 Sechium edule
Sed0017607 Sechium edule
Sed0026476 Sechium edule
SEGI_26546 Sequoiadendron giganteum
SEGI_41335 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05470 Striga asiatica
SGA_v2.0_scaffold120G32807 Striga asiatica
SGA_v2.0_scaffold146G36186 Striga asiatica
SGA_v2.0_scaffold250G45012 Striga asiatica
SGA_v2.0_scaffold303G47891 Striga asiatica
SGA_v2.0_scaffold47G17793 Striga asiatica
SHI20396 Sapria himalayana
SMO116G0273 Selaginella moellendorffii
Solyc03g007180.1 Solanum lycopersicum
Solyc08g079540.4 Solanum lycopersicum
Solyc08g079550.1 Solanum lycopersicum
Sopen03g003160 Solanum pennellii
Sopen08g027910 Solanum pennellii
Sp1g10980 Schrenkiella parvula
Sp2g01750 Schrenkiella parvula
TAR374G1065 Trochodendron aralioides
TAR374G1482 Trochodendron aralioides
TAR375G0602 Trochodendron aralioides
TAR622G0381 Trochodendron aralioides
TAR629G1451 Trochodendron aralioides
TAR636G2037 Trochodendron aralioides
THA.LOC104809664 Tarenaya hassleriana
THA.LOC104818366 Tarenaya hassleriana
Thecc.03G161000 Theobroma cacao
Thecc.03G262600 Theobroma cacao
Thhalv10006821m.g Eutrema salsugineum
Thhalv10023299m.g Eutrema salsugineum
TPR.G10675 Trifolium pratense
TPR.G37613 Trifolium pratense
TWI60G0283 Tripterygium wilfordii
TWI81G0403 Tripterygium wilfordii
unitig_0.g1232 Utricularia gibba
unitig_61.g26351 Utricularia gibba
vmacro00221 Vaccinium macrocarpon
VMungo0464G0976 Vigna mungo
VMungo0720G2292 Vigna mungo
VMungo1080G0148 Vigna mungo
VMungo1215G0369 Vigna mungo
VMungo1215G2978 Vigna mungo

User provided reference genes

Program Settings