Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p34140 Brassica napus
A06p08400 Brassica napus
A06p42420 Brassica napus
A08p32340 Brassica napus
Aa31LG10G4880 Aethionema arabicum
Aa31LG1G1510 Aethionema arabicum
Aa31LG2G6490 Aethionema arabicum
Actinidia14884 Actinidia chinensis
Actinidia16646 Actinidia chinensis
Actinidia38380 Actinidia chinensis
Actinidia39826 Actinidia chinensis
Ah.03g137750 Amaranthus hybridus
AL1G25110 Arabidopsis lyrata
AL1G55950 Arabidopsis lyrata
AL5G14510 Arabidopsis lyrata
Aqoxy3G00318 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AI2V23 Arachis hypogaea
AT1G13360 Arabidopsis thaliana
AT3G25870 Arabidopsis thaliana
ATR0626G174 Amborella trichopoda
ATR1125G083 Amborella trichopoda
Atru.chr11.1281 Acer truncatum
Atru.chr9.822 Acer truncatum
AUR62035241 Chenopodium quinoa
BcaB03g13144 Brassica carinata
BcaB07g30251 Brassica carinata
BcaC03g17296 Brassica carinata
BcaC05g25051 Brassica carinata
BcaC06g31109 Brassica carinata
BcaC06g33945 Brassica carinata
BcaC07g38689 Brassica carinata
BolC2t11321H Brassica oleracea
BolC5t29733H Brassica oleracea
BolC7t44021H Brassica oleracea
BolC8t49232H Brassica oleracea
BraA02t08428Z Brassica rapa
BraA06t24036Z Brassica rapa
BraA06t27157Z Brassica rapa
BraA08t35157Z Brassica rapa
C02p52400 Brassica napus
C05p09930 Brassica napus
C07p34900 Brassica napus
C08p16090 Brassica napus
CAN.G423.8 Capsicum annuum
CAN.G438.133 Capsicum annuum
CANSAT01G2454 Cannabis sativa
CARHR013740 Cardamine hirsuta
CARHR146830 Cardamine hirsuta
Carub.0001s1308 Capsella rubella
Carub.0005s0370 Capsella rubella
Ca_11178_v3 Cicer arietinum L.
Ca_25451_v3 Cicer arietinum L.
Ca_25500_v3 Cicer arietinum L.
Cc00_g12390 Coffea canephora
Cc04_g07200 Coffea canephora
CDE04G3659 Ceratophyllum demersum
CDE06G0372 Ceratophyllum demersum
CDE06G2819 Ceratophyllum demersum
CDE07G1096 Ceratophyllum demersum
Cfa010965 Carpinus fangiana
Cfa018604 Carpinus fangiana
Cfa019788 Carpinus fangiana
Ciclev10022179m.g Citrus clementina
Ciclev10032842m.g Citrus clementina
CiPaw.15G084000 Carya illinoinensis
CiPaw.15G129600 Carya illinoinensis
CiPaw.16G064200 Carya illinoinensis
ClCG04G011180 Citrullus lanatus
ClCG05G022790 Citrullus lanatus
ClCG06G014880 Citrullus lanatus
ClCG08G005250 Citrullus lanatus
COL.COLO4_04673 Corchorus olitorius
COL.COLO4_07913 Corchorus olitorius
Cpa.g.sc13.2 Carica papaya
Cpa.g.sc448.1 Carica papaya
CsaV3_1G003770 Cucumis sativus L.
CsaV3_1G006570 Cucumis sativus L.
CsaV3_5G034240 Cucumis sativus L.
CsaV3_6G003450 Cucumis sativus L.
CSS0003643 Camellia sinensis var. sinensis
CSS0015690 Camellia sinensis var. sinensis
CSS0039080 Camellia sinensis var. sinensis
CSS0050023 Camellia sinensis var. sinensis
DCAR_011350 Daucus carota
DCAR_026730 Daucus carota
DCAR_030071 Daucus carota
Dinv04477 Davidia involucrata
Dinv09805 Davidia involucrata
Dinv16358 Davidia involucrata
Dinv21099 Davidia involucrata
Dinv28089 Davidia involucrata
Duzib068G0367 Durio zibethinus
Duzib084G0173 Durio zibethinus
Duzib205G1666 Durio zibethinus
Duzib248G1226 Durio zibethinus
Duzib251G0566 Durio zibethinus
Duzib268G0137 Durio zibethinus
ECA233G6013 Erigeron canadensis
EL10Ac6g14427 Beta vulgaris
Eucgr.B03018 Eucalyptus grandis
Eucgr.K02217 Eucalyptus grandis
FAN04G1468 Fragaria x ananassa
FAN07G2061 Fragaria x ananassa
FAN08G0576 Fragaria x ananassa
FAN12G1145 Fragaria x ananassa
FAN12G2183 Fragaria x ananassa
FAN13G2702 Fragaria x ananassa
FAN18G0057 Fragaria x ananassa
FAN18G1637 Fragaria x ananassa
FAN22G1215 Fragaria x ananassa
FvH4_4g27540 Fragaria vesca
FvH4_5g12280 Fragaria vesca
Glyma.05G233500 Glycine max
Glyma.07G090800 Glycine max
Glyma.08G040800 Glycine max
Glyma.09G185200 Glycine max
Glyma.10G275000 Glycine max
Glyma.20G114800 Glycine max
Gohir.A09G177400 Gossypium hirsutum
Gohir.A11G005700 Gossypium hirsutum
Gohir.A12G167500 Gossypium hirsutum
Gohir.A12G266250 Gossypium hirsutum
Gohir.A13G054900 Gossypium hirsutum
Gohir.D09G172900 Gossypium hirsutum
Gohir.D11G004801 Gossypium hirsutum
Gohir.D12G171100 Gossypium hirsutum
Gohir.D12G171250 Gossypium hirsutum
Gohir.D12G266500 Gossypium hirsutum
Gohir.D13G067100 Gossypium hirsutum
Gorai.006G194800 Gossypium raimondii
Gorai.007G006000 Gossypium raimondii
Gorai.008G183700 Gossypium raimondii
Gorai.008G286400 Gossypium raimondii
Gorai.013G076400 Gossypium raimondii
GSVIVG01011906001 Vitis vinifera
HanXRQChr08g0214131 Helianthus annuus
HanXRQChr12g0364641 Helianthus annuus
HanXRQChr17g0552161 Helianthus annuus
Haze_17470 Corylus avellana
Haze_18660 Corylus avellana
Hma1.2p1_0061F.1_g034080 Hydrangea macrophylla
Hma1.2p1_0406F.1_g146170 Hydrangea macrophylla
Hma1.2p1_0592F.1_g185326 Hydrangea macrophylla
Hma1.2p1_1001F.1_g246520 Hydrangea macrophylla
Hma1.2p1_2265F.1_g318410 Hydrangea macrophylla
HPP92_000151 Vanilla planifolia
HPP92_021598 Vanilla planifolia
HPP92_021854 Vanilla planifolia
HPP92_027122 Vanilla planifolia
HPP92_027373 Vanilla planifolia
Hund20845 Selenicereus undatus
Lalb_Chr02g0146041 Lupinus albus
Lalb_Chr05g0222551 Lupinus albus
Lalb_Chr14g0371221 Lupinus albus
Lalb_Chr16g0387911 Lupinus albus
Lalb_Chr21g0308971 Lupinus albus
Lalb_Chr22g0353031 Lupinus albus
Lj2g0015775 Lotus japonicus
Lj3P1016T15 Lonicera japonica
Lj4g0014578 Lotus japonicus
Lj5g0006025 Lotus japonicus
Lsat_1_v5_gn_3_59460 Lactuca sativa
Lsat_1_v5_gn_4_18360 Lactuca sativa
Manes.01G012400 Manihot esculenta
Manes.05G137800 Manihot esculenta
Manes.06G069300 Manihot esculenta
Manes.14G101400 Manihot esculenta
MBI10_g16026_MAGBIO Magnolia biondii
MBI16_g16414_MAGBIO Magnolia biondii
MD06G1215300 Malus domestica
MD13G1042900 Malus domestica
MD14G1226200 Malus domestica
MD16G1043800 Malus domestica
Medtr1g111060 Medicago truncatula
Medtr6g084600 Medicago truncatula
Medtr8g104140 Medicago truncatula
MELO3C002083.2 Cucumis melo
MELO3C011565.2 Cucumis melo
MELO3C012239.2 Cucumis melo
MELO3C017301.2 Cucumis melo
Migut.E00330 Erythranthe guttata
Migut.L01071 Erythranthe guttata
MSTRG.13521 Avicennia marina
MSTRG.2245 Avicennia marina
MSTRG.831 Avicennia marina
Nitab4.5_0000057g0330 Nicotiana tabacum
Nitab4.5_0000208g0200 Nicotiana tabacum
Nitab4.5_0001194g0010 Nicotiana tabacum
Nitab4.5_0003189g0020 Nicotiana tabacum
Nitab4.5_0004895g0030 Nicotiana tabacum
Nitab4.5_0006638g0030 Nicotiana tabacum
Nitab4.5_0007985g0040 Nicotiana tabacum
Nitab4.5_0010492g0010 Nicotiana tabacum
Nitab4.5_0011024g0010 Nicotiana tabacum
Nitab4.5_0017241g0010 Nicotiana tabacum
Nn3g17816 Nelumbo nucifera
Nn4g23814 Nelumbo nucifera
Oeu008049.1 Olea europaea
Oeu009782.1 Olea europaea
Oeu014307.1 Olea europaea
Oeu027682.1 Olea europaea
Oeu031897.1 Olea europaea
Oeu039263.1 Olea europaea
Os01g0131300 Oryza sativa ssp. japonica
Peaxi162Scf00013g00912 Petunia axillaris
Peaxi162Scf00015g00812 Petunia axillaris
Peaxi162Scf00086g00101 Petunia axillaris
Peaxi162Scf00382g00023 Petunia axillaris
PGR044G1243 Punica granatum
PGR083G0350 Punica granatum
PGR102G2665 Punica granatum
PGSC0003DMG400005716 Solanum tuberosum
PGSC0003DMG400012967 Solanum tuberosum
PGSC0003DMG400015874 Solanum tuberosum
PGSC0003DMG400021770 Solanum tuberosum
PGSC0003DMG400028789 Solanum tuberosum
Phvul.002G315700 Phaseolus vulgaris
Phvul.004G158400 Phaseolus vulgaris
Phvul.007G026700 Phaseolus vulgaris
Potri.008G119800 Populus trichocarpa
Potri.010G126000 Populus trichocarpa
Potri.015G054300 Populus trichocarpa
Prupe.1G309700 Prunus persica
Prupe.5G220600 Prunus persica
Psat1g038160 Pisum sativum
Psat6g228840 Pisum sativum
Psat7g012840 Pisum sativum
PSO017G1795 Papaver somniferum
PSO017G4876 Papaver somniferum
PSO478G2314 Papaver somniferum
QL01p043511 Quercus lobata
QL10p025078 Quercus lobata
RcHm_v2.0_Chr4g0435381 Rosa chinensis
RcHm_v2.0_Chr7g0185281 Rosa chinensis
Rhsim08G0135300 Rhododendron simsii
Rhsim09G0108900 Rhododendron simsii
Rhsim12G0083100 Rhododendron simsii
Sabra08G0090800 Salix brachista
Sabra10G0095700 Salix brachista
Sabra15G0075100 Salix brachista
SalBow4G2594 Salvia bowleyana
SalBow8G3108 Salvia bowleyana
SalBow8G4143 Salvia bowleyana
SalBow8G5368 Salvia bowleyana
Sc04g0006530 Simmondsia chinensis
Sed0002119 Sechium edule
Sed0004753 Sechium edule
Sed0015458 Sechium edule
Sed0018111 Sechium edule
Sed0022428 Sechium edule
Sed0025092 Sechium edule
Sed0025828 Sechium edule
SGA_v2.0_scaffold170G38753 Striga asiatica
SHI26913 Sapria himalayana
Solyc03g119610.1 Solanum lycopersicum
Solyc04g007130.1 Solanum lycopersicum
Solyc05g009520.2 Solanum lycopersicum
Solyc06g069150.1 Solanum lycopersicum
Solyc12g036900.1 Solanum lycopersicum
Sopen03g038440 Solanum pennellii
Sopen04g002220 Solanum pennellii
Sopen05g005330 Solanum pennellii
Sopen06g026430 Solanum pennellii
Sopen12g017580 Solanum pennellii
Sp1g11860 Schrenkiella parvula
Sp1g35970 Schrenkiella parvula
Sp2g15110 Schrenkiella parvula
TAR371G1148 Trochodendron aralioides
TAR374G0921 Trochodendron aralioides
TAR622G0007 Trochodendron aralioides
TAR629G0720 Trochodendron aralioides
THA.LOC104805252 Tarenaya hassleriana
THA.LOC104821884 Tarenaya hassleriana
THA.LOC104822177 Tarenaya hassleriana
THA.LOC104825702 Tarenaya hassleriana
Thecc.02G356300 Theobroma cacao
Thecc.03G033900 Theobroma cacao
Thhalv10005009m.g Eutrema salsugineum
Thhalv10008809m.g Eutrema salsugineum
TPR.G26279 Trifolium pratense
TPR.G32693 Trifolium pratense
TPR.G35240 Trifolium pratense
TWI31G0181 Tripterygium wilfordii
TWI75G0443 Tripterygium wilfordii
TWI79G0250 Tripterygium wilfordii
TWI81G0977 Tripterygium wilfordii
unitig_10.g29679 Utricularia gibba
unitig_22.g5568 Utricularia gibba
unitig_22.g6553 Utricularia gibba
unitig_26.g10262 Utricularia gibba
unitig_27.g25192 Utricularia gibba
unitig_52.g17137 Utricularia gibba
unitig_8.g3977 Utricularia gibba
VMungo0251G2449 Vigna mungo
VMungo0464G1075 Vigna mungo
VMungo0720G1033 Vigna mungo
Zm00001eb107300 Zea mays
Zm00001eb125340 Zea mays
Zm00001eb335140 Zea mays

User provided reference genes

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