Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p39570 Brassica napus
A03p49560 Brassica napus
Aa31LG10G6130 Aethionema arabicum
Aa31LG8G1300 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.532 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.778 Anthoceros agrestis
Actinidia18635 Actinidia chinensis
Actinidia21796 Actinidia chinensis
Actinidia32195 Actinidia chinensis
Ah.04g155170 Amaranthus hybridus
AL3G26300 Arabidopsis lyrata
AL7G39120 Arabidopsis lyrata
Aqoxy5G00803 Aquilegia oxysepala
Aqoxy7G04100 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.07091Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ATFG0I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I1DE2P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L26R3M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MG6I4X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XAN60E Arachis hypogaea
AT3G14075 Arabidopsis thaliana
AT4G16070 Arabidopsis thaliana
ATR0053G040 Amborella trichopoda
ATR0053G041 Amborella trichopoda
Atru.chr1.4041 Acer truncatum
Atru.chr4.2921 Acer truncatum
AUR62001455 Chenopodium quinoa
AUR62009911 Chenopodium quinoa
AUR62016164 Chenopodium quinoa
AUR62035078 Chenopodium quinoa
BcaC06g32981 Brassica carinata
BcaC06g33471 Brassica carinata
BcaNung00232 Brassica carinata
BcaNung04888 Brassica carinata
BcaNung04889 Brassica carinata
BcaNung06668 Brassica carinata
BolC1t05002H Brassica oleracea
BolC7t45286H Brassica oleracea
BraA01t03997Z Brassica rapa
BraA03t14054Z Brassica rapa
C01p50510 Brassica napus
C07p47620 Brassica napus
CAN.G14.9 Capsicum annuum
CAN.G862.48 Capsicum annuum
CANSAT56G1355 Cannabis sativa
CANSAT78G0720 Cannabis sativa
CARHR088930 Cardamine hirsuta
CARHR290690 Cardamine hirsuta
Carub.0003s1368 Capsella rubella
Carub.0007s2555 Capsella rubella
Ca_01906_v3 Cicer arietinum L.
Ca_23399_v3 Cicer arietinum L.
CBR_g5746 Chara braunii
Cc03_g01380 Coffea canephora
Cc03_g01390 Coffea canephora
Cc04_g01170 Coffea canephora
CDE05G0228 Ceratophyllum demersum
CDE05G2256 Ceratophyllum demersum
CDE05G3446 Ceratophyllum demersum
CDE09G0532 Ceratophyllum demersum
Cfa003520 Carpinus fangiana
Cfa015447 Carpinus fangiana
Cfa026825 Carpinus fangiana
Ciclev10004534m.g Citrus clementina
Ciclev10025081m.g Citrus clementina
CiPaw.01G144500 Carya illinoinensis
CiPaw.01G217000 Carya illinoinensis
CiPaw.02G134700 Carya illinoinensis
ClCG06G004880 Citrullus lanatus
ClCG07G014540 Citrullus lanatus
COL.COLO4_30734 Corchorus olitorius
COL.COLO4_34699 Corchorus olitorius
Cpa.g.sc25.136 Carica papaya
Cpa.g.sc9.117 Carica papaya
Cre03.g144524 Chlamydomonas reinhardtii
Cre09.g390615 Chlamydomonas reinhardtii
Cre10.g463600 Chlamydomonas reinhardtii
CsaV3_3G030770 Cucumis sativus L.
CsaV3_6G022670 Cucumis sativus L.
CSS0005352 Camellia sinensis var. sinensis
CSS0044459 Camellia sinensis var. sinensis
DCAR_022685 Daucus carota
DCAR_023307 Daucus carota
DCAR_027043 Daucus carota
Dinv29711 Davidia involucrata
Duzib151G0777 Durio zibethinus
Duzib160G0563 Durio zibethinus
Duzib235G0425 Durio zibethinus
ECA232G1947 Erigeron canadensis
ECA240G3796 Erigeron canadensis
EL10Ac3g04941 Beta vulgaris
EL10Ac7g16433 Beta vulgaris
Eucgr.F04399 Eucalyptus grandis
Eucgr.H03970 Eucalyptus grandis
FAN02G4185 Fragaria x ananassa
FAN05G1044 Fragaria x ananassa
FAN07G2820 Fragaria x ananassa
FAN09G3698 Fragaria x ananassa
FAN12G2630 Fragaria x ananassa
FAN12G2948 Fragaria x ananassa
FAN14G2969 Fragaria x ananassa
FAN17G1551 Fragaria x ananassa
FvH4_4g18880 Fragaria vesca
FvH4_6g35030 Fragaria vesca
Glyma.01G011500 Glycine max
Glyma.01G011600 Glycine max
Glyma.01G011800 Glycine max
Glyma.01G012100 Glycine max
Glyma.01G012200 Glycine max
Glyma.01G012800 Glycine max
Glyma.01G013200 Glycine max
Glyma.07G040500 Glycine max
Glyma.09G041200 Glycine max
Glyma.09G209400 Glycine max
Glyma.09G209501 Glycine max
Glyma.14G114533 Glycine max
Glyma.15G152700 Glycine max
Glyma.16G009100 Glycine max
Glyma.17G029400 Glycine max
Gohir.A01G033300 Gossypium hirsutum
Gohir.A06G143800 Gossypium hirsutum
Gohir.A09G063300 Gossypium hirsutum
Gohir.D01G023505 Gossypium hirsutum
Gohir.D06G149700 Gossypium hirsutum
Gohir.D09G062200 Gossypium hirsutum
Gorai.002G029000 Gossypium raimondii
Gorai.006G077000 Gossypium raimondii
Gorai.010G174700 Gossypium raimondii
GSVIVG01016732001 Vitis vinifera
GSVIVG01035091001 Vitis vinifera
HanXRQChr03g0085461 Helianthus annuus
HanXRQChr09g0277001 Helianthus annuus
Haze_01145 Corylus avellana
Haze_16048 Corylus avellana
Hma1.2p1_0013F.1_g009100 Hydrangea macrophylla
Hma1.2p1_0229F.1_g096660 Hydrangea macrophylla
Hma1.2p1_0291F.1_g114900 Hydrangea macrophylla
Hma1.2p1_1352F.1_g277560 Hydrangea macrophylla
HPP92_011373 Vanilla planifolia
HPP92_011374 Vanilla planifolia
HPP92_011375 Vanilla planifolia
HPP92_011862 Vanilla planifolia
HPP92_013023 Vanilla planifolia
Hund00397 Selenicereus undatus
Hund03088 Selenicereus undatus
Hund07161 Selenicereus undatus
Hund18682 Selenicereus undatus
Lalb_Chr04g0253661 Lupinus albus
Lalb_Chr10g0101421 Lupinus albus
Lalb_Chr12g0201141 Lupinus albus
Lalb_Chr13g0298211 Lupinus albus
Lalb_Chr13g0298221 Lupinus albus
Lalb_Chr14g0372391 Lupinus albus
Lalb_Chr17g0343511 Lupinus albus
Lalb_Chr17g0343521 Lupinus albus
Lalb_Chr17g0343531 Lupinus albus
Lalb_Chr20g0121151 Lupinus albus
Lj3g0004850 Lotus japonicus
Lj5C34T1 Lonicera japonica
Lj6C682G22 Lonicera japonica
Lj6g0025091 Lotus japonicus
Lsat_1_v5_gn_4_92880 Lactuca sativa
Lsat_1_v5_gn_6_76180 Lactuca sativa
Manes.11G017300 Manihot esculenta
Manes.15G009200 Manihot esculenta
Mapoly0047s0124 Marchantia polymorpha
Mapoly0124s0004 Marchantia polymorpha
MBI13_g00709_MAGBIO Magnolia biondii
MBI13_g35423_MAGBIO Magnolia biondii
MBI19_g08249_MAGBIO Magnolia biondii
MCO02G433 Micromonas commoda
MCO03G080 Micromonas commoda
MD09G1180000 Malus domestica
MD13G1162400 Malus domestica
MD16G1162200 Malus domestica
MD17G1165600 Malus domestica
Medtr2g435530 Medicago truncatula
MELO3C021304.2 Cucumis melo
MELO3C022670.2 Cucumis melo
Migut.D00932 Erythranthe guttata
Migut.G00120 Erythranthe guttata
MSTRG.3882 Avicennia marina
MSTRG.4548 Avicennia marina
MSTRG.9526 Avicennia marina
Nitab4.5_0000361g0070 Nicotiana tabacum
Nitab4.5_0000616g0110 Nicotiana tabacum
Nitab4.5_0002898g0090 Nicotiana tabacum
Nitab4.5_0009304g0020 Nicotiana tabacum
Nn3g21573 Nelumbo nucifera
Nn4g25719 Nelumbo nucifera
Nn8g38607 Nelumbo nucifera
Oeu000396.3 Olea europaea
Oeu016257.1 Olea europaea
Oeu028324.1 Olea europaea
Os01g0309900 Oryza sativa ssp. japonica
Os02g0780700 Oryza sativa ssp. japonica
Os03g0830900 Oryza sativa ssp. japonica
Os11g0658900 Oryza sativa ssp. japonica
Os12g0554500 Oryza sativa ssp. japonica
Peaxi162Scf00038g00203 Petunia axillaris
Peaxi162Scf00065g00099 Petunia axillaris
PGR004G2212 Punica granatum
PGR119G0494 Punica granatum
PGSC0003DMG400018052 Solanum tuberosum
PGSC0003DMG400022898 Solanum tuberosum
Phvul.002G134400 Phaseolus vulgaris
Phvul.002G134600 Phaseolus vulgaris
Phvul.002G134700 Phaseolus vulgaris
Phvul.002G134801 Phaseolus vulgaris
Phvul.002G134900 Phaseolus vulgaris
Phvul.002G135500 Phaseolus vulgaris
Phvul.002G135900 Phaseolus vulgaris
Phvul.003G108400 Phaseolus vulgaris
Phvul.004G103214 Phaseolus vulgaris
Phvul.008G243700 Phaseolus vulgaris
Phvul.009G251900 Phaseolus vulgaris
Phvul.010G076001 Phaseolus vulgaris
Phvul.010G128300 Phaseolus vulgaris
Potri.003G067900 Populus trichocarpa
Potri.008G211200 Populus trichocarpa
Potri.010G005800 Populus trichocarpa
Pp3c12_2950 Physcomitrium patens
Pp3c5_15530 Physcomitrium patens
Prupe.1G129700 Prunus persica
Prupe.3G038800 Prunus persica
Psat1g156120 Pisum sativum
Psat4g168000 Pisum sativum
PSO135G0606 Papaver somniferum
PSO210G4294 Papaver somniferum
PSO724G0881 Papaver somniferum
PSO832G1449 Papaver somniferum
QL05p003951 Quercus lobata
QL06p010877 Quercus lobata
RcHm_v2.0_Chr2g0146191 Rosa chinensis
RcHm_v2.0_Chr2g0160841 Rosa chinensis
RcHm_v2.0_Chr4g0423781 Rosa chinensis
Rhsim04G0228100 Rhododendron simsii
Rhsim08G0240400 Rhododendron simsii
Sabra03G0039800 Salix brachista
Sabra10G0005000 Salix brachista
SalBow2G3504 Salvia bowleyana
SalBow7G3278 Salvia bowleyana
Sc15g0000520 Simmondsia chinensis
Sc15g0000530 Simmondsia chinensis
Sc25g0003520 Simmondsia chinensis
Sed0005200 Sechium edule
Sed0026706 Sechium edule
SEGI_12054 Sequoiadendron giganteum
SGA_v2.0_scaffold146G36235 Striga asiatica
SGA_v2.0_scaffold4G02071 Striga asiatica
SHI00198 Sapria himalayana
SHI51193 Sapria himalayana
SMO351G0331 Selaginella moellendorffii
Solyc03g122280.3 Solanum lycopersicum
Sopen03g041020 Solanum pennellii
Sp3g12330 Schrenkiella parvula
Sp7g14540 Schrenkiella parvula
TAR362G0561 Trochodendron aralioides
TAR624G0854 Trochodendron aralioides
TAR636G1335 Trochodendron aralioides
THA.LOC104802590 Tarenaya hassleriana
THA.LOC104822661 Tarenaya hassleriana
Thecc.04G290800 Theobroma cacao
Thecc.06G122800 Theobroma cacao
Thhalv10020264m.g Eutrema salsugineum
Thhalv10024634m.g Eutrema salsugineum
TPR.G16740 Trifolium pratense
TPR.G24641 Trifolium pratense
TWI14G1185 Tripterygium wilfordii
TWI59G1101 Tripterygium wilfordii
TWI73G0517 Tripterygium wilfordii
unitig_0.g2219 Utricularia gibba
vmacro08099 Vaccinium macrocarpon
vmacro08100 Vaccinium macrocarpon
vmacro15044 Vaccinium macrocarpon
VMungo0331G1604 Vigna mungo
VMungo1215G0002 Vigna mungo
VMungo1215G0331 Vigna mungo
VMungo1215G0386 Vigna mungo
VMungo1215G1549 Vigna mungo
VMungo1215G2031 Vigna mungo
VMungo1215G2241 Vigna mungo
VMungo1215G2502 Vigna mungo
VMungo1215G2896 Vigna mungo
VMungo1215G3167 Vigna mungo
VMungo1309G2193 Vigna mungo
Zm00001eb009230 Zea mays
Zm00001eb057880 Zea mays
Zm00001eb137110 Zea mays
Zm00001eb202540 Zea mays
Zm00001eb211220 Zea mays
Zm00001eb225730 Zea mays
Zm00001eb257000 Zea mays
Zm00001eb297220 Zea mays
Zm00001eb300190 Zea mays
Zm00001eb339890 Zea mays
Zm00001eb375330 Zea mays
Zm00001eb392360 Zea mays
Zm00001eb410060 Zea mays
Zm00001eb421410 Zea mays

User provided reference genes

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