Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p07010 Brassica napus
A06p36720 Brassica napus
A08p18740 Brassica napus
A09p05920 Brassica napus
A10p07340 Brassica napus
Aa31LG1G8910 Aethionema arabicum
Aa31LG1G8930 Aethionema arabicum
Aa31LG2G19080 Aethionema arabicum
Aa31LG6G9250 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2338 Anthoceros agrestis
Actinidia03336 Actinidia chinensis
Actinidia03481 Actinidia chinensis
Actinidia25740 Actinidia chinensis
Ah.05g170900 Amaranthus hybridus
AL1G52450 Arabidopsis lyrata
AL6G38220 Arabidopsis lyrata
AL7G20790 Arabidopsis lyrata
Aqoxy6G00185 Aquilegia oxysepala
Aqoxy7G02667 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.265AFI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4D0408 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BXVS1E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JFC39M Arachis hypogaea
AT1G44790 Arabidopsis thaliana
AT4G31290 Arabidopsis thaliana
AT5G26220 Arabidopsis thaliana
ATR0626G166 Amborella trichopoda
ATR0681G269 Amborella trichopoda
ATR0709G036 Amborella trichopoda
Atru.chr13.1432 Acer truncatum
Atru.chr7.2691 Acer truncatum
AUR62002737 Chenopodium quinoa
AUR62020648 Chenopodium quinoa
AUR62030182 Chenopodium quinoa
AUR62038725 Chenopodium quinoa
BcaB03g12687 Brassica carinata
BcaB04g19743 Brassica carinata
BcaB07g33935 Brassica carinata
BcaC01g01104 Brassica carinata
BcaC04g23609 Brassica carinata
BcaC08g42868 Brassica carinata
BcaC09g51906 Brassica carinata
BcaNung02810 Brassica carinata
BcaNung03973 Brassica carinata
BcaNung05316 Brassica carinata
BolC1t00757H Brassica oleracea
BolC3t21120H Brassica oleracea
BolC6t35220H Brassica oleracea
BolC7t44713H Brassica oleracea
BolC9t53572H Brassica oleracea
BraA01t00652Z Brassica rapa
BraA06t26593Z Brassica rapa
BraA08t33835Z Brassica rapa
BraA09t36234Z Brassica rapa
BraSC36t46080Z Brassica rapa
C01p07740 Brassica napus
C03p88120 Brassica napus
C06p00780 Brassica napus
C07p41820 Brassica napus
C09p06500 Brassica napus
CAN.G127.20 Capsicum annuum
CAN.G1364.6 Capsicum annuum
CAN.G947.14 Capsicum annuum
CANSAT25G3805 Cannabis sativa
CANSAT54G0211 Cannabis sativa
CANSAT54G0793 Cannabis sativa
CARHR036050 Cardamine hirsuta
CARHR187150 Cardamine hirsuta
CARHR239160 Cardamine hirsuta
Carub.0001s3531 Capsella rubella
Carub.0006s2400 Capsella rubella
Carub.0007s0927 Capsella rubella
Ca_12611_v3 Cicer arietinum L.
Ca_15637_v3 Cicer arietinum L.
CBR_g28532 Chara braunii
Cc00_g05390 Coffea canephora
Cc00_g05400 Coffea canephora
Cc10_g10880 Coffea canephora
CDE06G0423 Ceratophyllum demersum
CDE07G2057 Ceratophyllum demersum
Cfa013307 Carpinus fangiana
Cfa016001 Carpinus fangiana
Ciclev10002572m.g Citrus clementina
Ciclev10009681m.g Citrus clementina
CiPaw.06G029100 Carya illinoinensis
CiPaw.07G210000 Carya illinoinensis
ClCG05G026340 Citrullus lanatus
ClCG08G005560 Citrullus lanatus
ClCG08G012540 Citrullus lanatus
COL.COLO4_18629 Corchorus olitorius
COL.COLO4_35950 Corchorus olitorius
Cpa.g.c34024 Carica papaya
Cpa.g.sc36.49 Carica papaya
Cre10.g452000 Chlamydomonas reinhardtii
CsaV3_2G014010 Cucumis sativus L.
CsaV3_2G031240 Cucumis sativus L.
CsaV3_3G047260 Cucumis sativus L.
CSS0001463 Camellia sinensis var. sinensis
CSS0025097 Camellia sinensis var. sinensis
CSS0041253 Camellia sinensis var. sinensis
CSS0045528 Camellia sinensis var. sinensis
DCAR_000675 Daucus carota
DCAR_004563 Daucus carota
DCAR_017411 Daucus carota
Dinv37492 Davidia involucrata
Dinv38808 Davidia involucrata
Duzib116G0721 Durio zibethinus
Duzib168G0807 Durio zibethinus
ECA240G0911 Erigeron canadensis
ECA246G4931 Erigeron canadensis
EL10Ac1g01044 Beta vulgaris
EL10Ac2g03686 Beta vulgaris
Eucgr.C02134 Eucalyptus grandis
Eucgr.F04359 Eucalyptus grandis
FAN11G1736 Fragaria x ananassa
FAN15G1452 Fragaria x ananassa
FAN15G3702 Fragaria x ananassa
FAN20G0342 Fragaria x ananassa
FAN20G2778 Fragaria x ananassa
FAN24G1250 Fragaria x ananassa
FAN27G2682 Fragaria x ananassa
FAN27G3459 Fragaria x ananassa
FvH4_2g26710 Fragaria vesca
FvH4_2g36490 Fragaria vesca
FvH4_3g36120 Fragaria vesca
Glyma.04G077300 Glycine max
Glyma.06G078400 Glycine max
Glyma.13G080900 Glycine max
Gohir.A06G043400 Gossypium hirsutum
Gohir.A06G107600 Gossypium hirsutum
Gohir.A07G000700 Gossypium hirsutum
Gohir.D06G044200 Gossypium hirsutum
Gohir.D06G109900 Gossypium hirsutum
Gohir.D07G001100 Gossypium hirsutum
Gorai.001G000800 Gossypium raimondii
Gorai.010G049400 Gossypium raimondii
Gorai.010G124700 Gossypium raimondii
GSVIVG01008887001 Vitis vinifera
GSVIVG01035568001 Vitis vinifera
HanXRQChr03g0082451 Helianthus annuus
HanXRQChr10g0301251 Helianthus annuus
HanXRQChr13g0411561 Helianthus annuus
Haze_00461 Corylus avellana
Haze_00463 Corylus avellana
Haze_21790 Corylus avellana
Hma1.2p1_0443F.1_g154010 Hydrangea macrophylla
HPP92_010799 Vanilla planifolia
HPP92_017380 Vanilla planifolia
Hund03261 Selenicereus undatus
Hund19387 Selenicereus undatus
Hund27027 Selenicereus undatus
Lalb_Chr08g0243481 Lupinus albus
Lalb_Chr10g0101821 Lupinus albus
Lalb_Chr11g0064241 Lupinus albus
Lalb_Chr11g0064251 Lupinus albus
Lalb_Chr23g0269251 Lupinus albus
Lj1g0025226 Lotus japonicus
Lj1g0027756 Lotus japonicus
Lj7C339G3 Lonicera japonica
Lj8A433T5 Lonicera japonica
Lj8A465T8 Lonicera japonica
Lsat_1_v5_gn_0_3940 Lactuca sativa
Lsat_1_v5_gn_5_101420 Lactuca sativa
Lsat_1_v5_gn_5_61180 Lactuca sativa
Lsat_1_v5_gn_8_16500 Lactuca sativa
Manes.16G137700 Manihot esculenta
Manes.18G076100 Manihot esculenta
Mapoly0035s0151 Marchantia polymorpha
MBI06_g20716_MAGBIO Magnolia biondii
MBI16_g37218_MAGBIO Magnolia biondii
MCO05G008 Micromonas commoda
MD00G1157300 Malus domestica
MD02G1097600 Malus domestica
MD02G1097700 Malus domestica
MD08G1124700 Malus domestica
MD15G1104100 Malus domestica
Medtr1g009155 Medicago truncatula
Medtr1g009210 Medicago truncatula
Medtr1g030430 Medicago truncatula
Medtr3g109250 Medicago truncatula
MELO3C003603.2 Cucumis melo
MELO3C010599.2 Cucumis melo
MELO3C011173.2 Cucumis melo
Migut.A00447 Erythranthe guttata
Migut.N03289 Erythranthe guttata
MSTRG.24166 Avicennia marina
MSTRG.25771 Avicennia marina
Nitab4.5_0000025g0090 Nicotiana tabacum
Nitab4.5_0001159g0090 Nicotiana tabacum
Nitab4.5_0001273g0040 Nicotiana tabacum
Nitab4.5_0001803g0100 Nicotiana tabacum
Nitab4.5_0003259g0080 Nicotiana tabacum
Nitab4.5_0003963g0020 Nicotiana tabacum
Nn8g41115 Nelumbo nucifera
Oeu008747.1 Olea europaea
Oeu026145.1 Olea europaea
Oeu026147.1 Olea europaea
Oeu038303.1 Olea europaea
Os02g0465900 Oryza sativa ssp. japonica
Os04g0448600 Oryza sativa ssp. japonica
Peaxi162Scf00045g01523 Petunia axillaris
Peaxi162Scf00068g01812 Petunia axillaris
Peaxi162Scf00459g00843 Petunia axillaris
PGR044G0685 Punica granatum
PGR084G0006 Punica granatum
PGR142G0571 Punica granatum
PGSC0003DMG400000886 Solanum tuberosum
PGSC0003DMG400009544 Solanum tuberosum
PGSC0003DMG400029373 Solanum tuberosum
Phvul.008G163900 Phaseolus vulgaris
Phvul.009G103300 Phaseolus vulgaris
Potri.005G176300 Populus trichocarpa
Potri.006G279000 Populus trichocarpa
Potri.018G002900 Populus trichocarpa
Pp3c10_14650 Physcomitrium patens
Pp3c12_5220 Physcomitrium patens
Pp3c3_22490 Physcomitrium patens
Pp3c4_15710 Physcomitrium patens
Pp3c8_14920 Physcomitrium patens
PRCOL_00001061 Prasinoderma coloniale
Prupe.1G456300 Prunus persica
Prupe.1G500300 Prunus persica
Psat0s709g0120 Pisum sativum
Psat6g042040 Pisum sativum
PSO063G1987 Papaver somniferum
PSO170G2987 Papaver somniferum
PSO170G5351 Papaver somniferum
PSO210G1813 Papaver somniferum
PSO483G0001 Papaver somniferum
PSO528G0051 Papaver somniferum
QL09p035418 Quercus lobata
QL12p025826 Quercus lobata
RcHm_v2.0_Chr6g0295581 Rosa chinensis
RcHm_v2.0_Chr6g0305381 Rosa chinensis
Rhsim09G0032300 Rhododendron simsii
RhsimUnG0033200 Rhododendron simsii
RhsimUnG0093900 Rhododendron simsii
Sabra05G0132900 Salix brachista
Sabra06G0216300 Salix brachista
Sabra18G0003200 Salix brachista
SalBow4G1204 Salvia bowleyana
SalBow6G4800 Salvia bowleyana
SalBow6G5139 Salvia bowleyana
SalBow7G0718 Salvia bowleyana
SalBow8G3000 Salvia bowleyana
Sc01g0001220 Simmondsia chinensis
Sc06g0001260 Simmondsia chinensis
Sed0002153 Sechium edule
Sed0006378 Sechium edule
Sed0024396 Sechium edule
SEGI_04447 Sequoiadendron giganteum
SEGI_34975 Sequoiadendron giganteum
SGA_v2.0_scaffold121G33038 Striga asiatica
SGA_v2.0_scaffold193G40655 Striga asiatica
SGA_v2.0_scaffold27G11663 Striga asiatica
SGA_v2.0_scaffold28G12005 Striga asiatica
SHI21135 Sapria himalayana
SMO147G0074 Selaginella moellendorffii
SMO347G0205 Selaginella moellendorffii
Solyc08g006150.3 Solanum lycopersicum
Solyc11g012910.2 Solanum lycopersicum
Solyc12g096320.2 Solanum lycopersicum
Sopen08g002110 Solanum pennellii
Sopen11g007650 Solanum pennellii
Sopen12g032180 Solanum pennellii
Sp1g33650 Schrenkiella parvula
Sp2g21530 Schrenkiella parvula
Sp7g29140 Schrenkiella parvula
TAR383G0783 Trochodendron aralioides
TAR628G0494 Trochodendron aralioides
TAR636G1798 Trochodendron aralioides
TAR636G3631 Trochodendron aralioides
THA.LOC104811222 Tarenaya hassleriana
THA.LOC104813146 Tarenaya hassleriana
THA.LOC104819923 Tarenaya hassleriana
Thecc.08G123200 Theobroma cacao
Thecc.09G002500 Theobroma cacao
Thecc.09G020400 Theobroma cacao
Thhalv10004888m.g Eutrema salsugineum
Thhalv10011803m.g Eutrema salsugineum
Thhalv10026164m.g Eutrema salsugineum
TPR.G12446 Trifolium pratense
TPR.G25804 Trifolium pratense
TWI12G1226 Tripterygium wilfordii
TWI63G0060 Tripterygium wilfordii
unitig_46.g18224 Utricularia gibba
unitig_8.g3345 Utricularia gibba
vmacro00587 Vaccinium macrocarpon
vmacro00823 Vaccinium macrocarpon
VMungo0647G1803 Vigna mungo
VMungo1309G2527 Vigna mungo
Zm00001eb038750 Zea mays
Zm00001eb041680 Zea mays
Zm00001eb203890 Zea mays
Zm00001eb203900 Zea mays
Zm00001eb220190 Zea mays
Zm00001eb240870 Zea mays
Zm00001eb333720 Zea mays
Zm00001eb351560 Zea mays
Zm00001eb423540 Zea mays

User provided reference genes

Program Settings