Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p19250 Brassica napus
A02p11370 Brassica napus
A03p57530 Brassica napus
A10p10510 Brassica napus
Aa31LG3G9450 Aethionema arabicum
Aa31LG5G990 Aethionema arabicum
Aa31LG7G12160 Aethionema arabicum
Actinidia07972 Actinidia chinensis
Actinidia08657 Actinidia chinensis
Actinidia20250 Actinidia chinensis
Actinidia28112 Actinidia chinensis
Actinidia28399 Actinidia chinensis
Actinidia34227 Actinidia chinensis
Ah.05g179410 Amaranthus hybridus
Ah.13g070390 Amaranthus hybridus
AL6G52440 Arabidopsis lyrata
AL7G24830 Arabidopsis lyrata
AL8G27650 Arabidopsis lyrata
Aqoxy4G02751 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.73LR1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EWV5Y4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N8QUMN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NAPQ43 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P3SJ11 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QL2KDB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S82JHH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T9RE2C Arachis hypogaea
AT4G00950 Arabidopsis thaliana
AT4G27810 Arabidopsis thaliana
AT5G53030 Arabidopsis thaliana
ATR0602G287 Amborella trichopoda
Atru.chr12.2237 Acer truncatum
Atru.chr5.685 Acer truncatum
AUR62004507 Chenopodium quinoa
BcaB01g02293 Brassica carinata
BcaB05g21864 Brassica carinata
BcaB05g22000 Brassica carinata
BcaB08g35662 Brassica carinata
BcaC03g14465 Brassica carinata
BcaC04g20515 Brassica carinata
BcaC04g24107 Brassica carinata
BcaC06g32661 Brassica carinata
BcaC09g50536 Brassica carinata
BcaNung01619 Brassica carinata
BolC1t02376H Brassica oleracea
BolC2t08023H Brassica oleracea
BolC7t46052H Brassica oleracea
BolC9t57149H Brassica oleracea
BraA01t01867Z Brassica rapa
BraA02t06201Z Brassica rapa
BraA03t14821Z Brassica rapa
BraA10t43133Z Brassica rapa
C01p24200 Brassica napus
C02p18780 Brassica napus
C07p55720 Brassica napus
C09p42730 Brassica napus
CAN.G1415.21 Capsicum annuum
CAN.G481.20 Capsicum annuum
CANSAT21G1534 Cannabis sativa
CANSAT56G1040 Cannabis sativa
CARHR235540 Cardamine hirsuta
CARHR249390 Cardamine hirsuta
CARHR266040 Cardamine hirsuta
Carub.0006s3599 Capsella rubella
Carub.0007s1301 Capsella rubella
Carub.0008s1322 Capsella rubella
Ca_09517_v3 Cicer arietinum L.
Ca_12786_v3 Cicer arietinum L.
Ca_12789_v3 Cicer arietinum L.
Ca_16716_v3 Cicer arietinum L.
Cc02_g01420 Coffea canephora
Cc02_g39550 Coffea canephora
CDE02G3261 Ceratophyllum demersum
Cfa016239 Carpinus fangiana
Ciclev10021650m.g Citrus clementina
Ciclev10021848m.g Citrus clementina
CiPaw.01G077500 Carya illinoinensis
CiPaw.05G197700 Carya illinoinensis
CiPaw.06G045500 Carya illinoinensis
ClCG01G000400 Citrullus lanatus
ClCG05G000740 Citrullus lanatus
ClCG05G008990 Citrullus lanatus
ClCG06G002630 Citrullus lanatus
COL.COLO4_06225 Corchorus olitorius
COL.COLO4_16773 Corchorus olitorius
Cpa.g.sc3.97 Carica papaya
Cpa.g.sc96.41 Carica papaya
CsaV3_3G007960 Cucumis sativus L.
CsaV3_3G019790 Cucumis sativus L.
CsaV3_5G000440 Cucumis sativus L.
CsaV3_6G008510 Cucumis sativus L.
CSS0021112 Camellia sinensis var. sinensis
CSS0025234 Camellia sinensis var. sinensis
DCAR_005401 Daucus carota
DCAR_020326 Daucus carota
DCAR_025263 Daucus carota
Dinv29268 Davidia involucrata
Dinv32603 Davidia involucrata
Dinv34219 Davidia involucrata
Dinv37328 Davidia involucrata
Duzib084G0563 Durio zibethinus
Duzib138G1576 Durio zibethinus
Duzib205G1627 Durio zibethinus
ECA232G1399 Erigeron canadensis
ECA234G4607 Erigeron canadensis
EL10Ac1g00249 Beta vulgaris
EL10Ac3g05266 Beta vulgaris
Eucgr.E00044 Eucalyptus grandis
Eucgr.E00045 Eucalyptus grandis
Eucgr.H01540 Eucalyptus grandis
Eucgr.H01594 Eucalyptus grandis
Eucgr.K00390 Eucalyptus grandis
FAN01G0248 Fragaria x ananassa
FAN01G2189 Fragaria x ananassa
FAN03G2616 Fragaria x ananassa
FAN03G3456 Fragaria x ananassa
FAN06G0152 Fragaria x ananassa
FAN06G1161 Fragaria x ananassa
FAN06G3788 Fragaria x ananassa
FAN06G4446 Fragaria x ananassa
FAN10G2930 Fragaria x ananassa
FAN10G3865 Fragaria x ananassa
FvH4_7g16850 Fragaria vesca
FvH4_7g31360 Fragaria vesca
Glyma.03G258400 Glycine max
Glyma.04G234700 Glycine max
Glyma.06G129800 Glycine max
Glyma.07G054700 Glycine max
Glyma.16G023500 Glycine max
Glyma.19G257000 Glycine max
Gohir.A03G051900 Gossypium hirsutum
Gohir.A07G136800 Gossypium hirsutum
Gohir.A11G097800 Gossypium hirsutum
Gohir.A12G113100 Gossypium hirsutum
Gohir.A12G249200 Gossypium hirsutum
Gohir.D03G115200 Gossypium hirsutum
Gohir.D07G142066 Gossypium hirsutum
Gohir.D11G102500 Gossypium hirsutum
Gohir.D12G116600 Gossypium hirsutum
Gohir.D12G250000 Gossypium hirsutum
Gorai.001G153800 Gossypium raimondii
Gorai.003G121500 Gossypium raimondii
Gorai.007G109600 Gossypium raimondii
Gorai.008G126300 Gossypium raimondii
Gorai.008G268100 Gossypium raimondii
GSVIVG01027167001 Vitis vinifera
GSVIVG01038561001 Vitis vinifera
HanXRQChr04g0112041 Helianthus annuus
HanXRQChr16g0524311 Helianthus annuus
HanXRQChr17g0563391 Helianthus annuus
Haze_00202 Corylus avellana
Haze_15674 Corylus avellana
Hma1.2p1_0101F.1_g049310 Hydrangea macrophylla
Hma1.2p1_0390F.1_g142630 Hydrangea macrophylla
Hma1.2p1_0404F.1_g145270 Hydrangea macrophylla
Hma1.2p1_1587F.1_g292270 Hydrangea macrophylla
HPP92_003652 Vanilla planifolia
HPP92_024616 Vanilla planifolia
Hund11650 Selenicereus undatus
Hund27189 Selenicereus undatus
Lalb_Chr08g0240171 Lupinus albus
Lalb_Chr10g0100621 Lupinus albus
Lalb_Chr11g0066941 Lupinus albus
Lalb_Chr17g0342761 Lupinus albus
Lalb_Chr18g0044551 Lupinus albus
Lj1g0020065 Lotus japonicus
Lj1g0024457 Lotus japonicus
Lj3E903T3 Lonicera japonica
Lj3g0010764 Lotus japonicus
Lj4g0010373 Lotus japonicus
Lsat_1_v5_gn_4_33660 Lactuca sativa
Lsat_1_v5_gn_6_85600 Lactuca sativa
Lsat_1_v5_gn_9_49640 Lactuca sativa
Manes.01G184600 Manihot esculenta
Manes.01G244900 Manihot esculenta
Manes.02G144300 Manihot esculenta
Manes.05G021600 Manihot esculenta
MBI06_g38007_MAGBIO Magnolia biondii
MD01G1083500 Malus domestica
MD01G1217700 Malus domestica
MD07G1152200 Malus domestica
MD07G1286900 Malus domestica
Medtr1g007905 Medicago truncatula
Medtr3g091680 Medicago truncatula
Medtr7g117695 Medicago truncatula
Medtr8g027435 Medicago truncatula
MELO3C005889.2 Cucumis melo
MELO3C006014.2 Cucumis melo
MELO3C008501.2 Cucumis melo
Migut.B01887 Erythranthe guttata
Migut.F01023 Erythranthe guttata
Migut.N01535 Erythranthe guttata
Migut.N01536 Erythranthe guttata
Migut.O00897 Erythranthe guttata
MSTRG.17354 Avicennia marina
MSTRG.28269 Avicennia marina
MSTRG.8647 Avicennia marina
Nitab4.5_0001763g0050 Nicotiana tabacum
Nitab4.5_0003046g0010 Nicotiana tabacum
Nitab4.5_0004497g0010 Nicotiana tabacum
Nitab4.5_0005514g0010 Nicotiana tabacum
Nitab4.5_0007888g0030 Nicotiana tabacum
Nitab4.5_0010712g0010 Nicotiana tabacum
Nn1g00284 Nelumbo nucifera
Oeu004958.1 Olea europaea
Oeu004983.1 Olea europaea
Oeu007879.1 Olea europaea
Oeu041061.1 Olea europaea
Oeu043226.1 Olea europaea
Oeu060992.1 Olea europaea
Peaxi162Scf00087g02228 Petunia axillaris
Peaxi162Scf00345g00124 Petunia axillaris
Peaxi162Scf00740g00136 Petunia axillaris
PGR042G3115 Punica granatum
PGR142G4389 Punica granatum
PGSC0003DMG400000119 Solanum tuberosum
PGSC0003DMG400007035 Solanum tuberosum
PGSC0003DMG400018549 Solanum tuberosum
PGSC0003DMG400018887 Solanum tuberosum
Phvul.001G075100 Phaseolus vulgaris
Phvul.006G114400 Phaseolus vulgaris
Phvul.009G051700 Phaseolus vulgaris
Potri.002G172900 Populus trichocarpa
Potri.012G016700 Populus trichocarpa
Potri.014G100200 Populus trichocarpa
Potri.015G011900 Populus trichocarpa
Prupe.2G190500 Prunus persica
Prupe.2G309000 Prunus persica
Prupe.6G127900 Prunus persica
Psat3g001920 Pisum sativum
Psat4g214600 Pisum sativum
Psat5g078440 Pisum sativum
Psat6g034840 Pisum sativum
PSO478G1176 Papaver somniferum
PSO782G1347 Papaver somniferum
QL08p045696 Quercus lobata
QL09p008666 Quercus lobata
RcHm_v2.0_Chr1g0360071 Rosa chinensis
RcHm_v2.0_Chr1g0380431 Rosa chinensis
Rhsim01G0174300 Rhododendron simsii
Rhsim03G0209500 Rhododendron simsii
Rhsim07G0003200 Rhododendron simsii
Sabra02G0140300 Salix brachista
Sabra14G0073600 Salix brachista
Sabra15G0009600 Salix brachista
SalBow2G3365 Salvia bowleyana
SalBow3G1264 Salvia bowleyana
SalBow4G0604 Salvia bowleyana
SalBow5G1307 Salvia bowleyana
Sc01g0002560 Simmondsia chinensis
Sc25g0000930 Simmondsia chinensis
Sed0003282 Sechium edule
Sed0004473 Sechium edule
Sed0023472 Sechium edule
Sed0026965 Sechium edule
Sed0027126 Sechium edule
SEGI_26205 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06542 Striga asiatica
SGA_v2.0_scaffold22G09962 Striga asiatica
SGA_v2.0_scaffold232G43549 Striga asiatica
SGA_v2.0_scaffold44G16810 Striga asiatica
Solyc01g096080.3 Solanum lycopersicum
Solyc03g083050.3 Solanum lycopersicum
Solyc05g050550.4 Solanum lycopersicum
Solyc10g009380.3 Solanum lycopersicum
Sopen01g039800 Solanum pennellii
Sopen03g022850 Solanum pennellii
Sopen05g028980 Solanum pennellii
Sopen10g005160 Solanum pennellii
Sp6g01185 Schrenkiella parvula
Sp6g15180 Schrenkiella parvula
Sp7g25790 Schrenkiella parvula
TAR425G0001 Trochodendron aralioides
TAR636G3588 Trochodendron aralioides
THA.LOC104811912 Tarenaya hassleriana
THA.LOC104817057 Tarenaya hassleriana
THA.LOC104825150 Tarenaya hassleriana
THA.LOC104825883 Tarenaya hassleriana
Thecc.01G340500 Theobroma cacao
Thecc.03G200400 Theobroma cacao
Thhalv10014570m.g Eutrema salsugineum
Thhalv10027290m.g Eutrema salsugineum
Thhalv10028866m.g Eutrema salsugineum
TPR.G12108 Trifolium pratense
TPR.G18779 Trifolium pratense
TPR.G20223 Trifolium pratense
TPR.G4734 Trifolium pratense
TWI14G0218 Tripterygium wilfordii
TWI23G0291 Tripterygium wilfordii
TWI39G0876 Tripterygium wilfordii
TWI59G0079 Tripterygium wilfordii
unitig_22.g6818 Utricularia gibba
unitig_578.g16275 Utricularia gibba
unitig_62.g23788 Utricularia gibba
unitig_748.g7293 Utricularia gibba
unitig_899.g14793 Utricularia gibba
vmacro06390 Vaccinium macrocarpon
vmacro13169 Vaccinium macrocarpon
VMungo0540G1854 Vigna mungo
VMungo0647G2336 Vigna mungo
VMungo1309G2827 Vigna mungo

User provided reference genes

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