Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17410 Brassica napus
A02p08820 Brassica napus
A09p47750 Brassica napus
A10p14300 Brassica napus
Aa31LG3G12870 Aethionema arabicum
Aa31LG3G510 Aethionema arabicum
Aa31LG5G9660 Aethionema arabicum
Actinidia25249 Actinidia chinensis
Actinidia26073 Actinidia chinensis
Actinidia30314 Actinidia chinensis
Actinidia30727 Actinidia chinensis
Actinidia39713 Actinidia chinensis
Actinidia39714 Actinidia chinensis
AL4G18280 Arabidopsis lyrata
AL52U10060 Arabidopsis lyrata
AL7G26850 Arabidopsis lyrata
AL8G32850 Arabidopsis lyrata
Aqoxy7G01205 Aquilegia oxysepala
AT2G26110 Arabidopsis thaliana
AT4G26130 Arabidopsis thaliana
AT5G56980 Arabidopsis thaliana
ATR0749G108 Amborella trichopoda
Atru.chr7.1599 Acer truncatum
AUR62039114 Chenopodium quinoa
BcaB01g00157 Brassica carinata
BcaB05g22304 Brassica carinata
BcaB08g36030 Brassica carinata
BcaC03g14188 Brassica carinata
BcaC04g20033 Brassica carinata
BcaC07g39780 Brassica carinata
BcaC09g50665 Brassica carinata
BcaNung05239 Brassica carinata
BolC1t02119H Brassica oleracea
BolC2t07596H Brassica oleracea
BolC8t50607H Brassica oleracea
BolC9t57710H Brassica oleracea
BraA01t01695Z Brassica rapa
BraA02t05949Z Brassica rapa
BraA09t40233Z Brassica rapa
BraA10t43521Z Brassica rapa
C01p21920 Brassica napus
C02p14710 Brassica napus
C08p29980 Brassica napus
CAN.G352.21 Capsicum annuum
CANSAT25G0876 Cannabis sativa
CANSAT56G0014 Cannabis sativa
CANSAT56G0176 Cannabis sativa
CARHR114840 Cardamine hirsuta
CARHR233650 Cardamine hirsuta
CARHR270720 Cardamine hirsuta
Carub.0004s0595 Capsella rubella
Carub.0007s1482 Capsella rubella
Carub.0008s1746 Capsella rubella
Ca_02160_v3 Cicer arietinum L.
Ca_13160_v3 Cicer arietinum L.
Ca_21280_v3 Cicer arietinum L.
Cc03_g09990 Coffea canephora
Cc06_g11460 Coffea canephora
Cc08_g10640 Coffea canephora
Cc11_g08620 Coffea canephora
CDE05G0947 Ceratophyllum demersum
CDE05G2600 Ceratophyllum demersum
Cfa003084 Carpinus fangiana
Cfa009978 Carpinus fangiana
Cfa013036 Carpinus fangiana
Cfa017959 Carpinus fangiana
Cfa018473 Carpinus fangiana
Ciclev10008860m.g Citrus clementina
Ciclev10009087m.g Citrus clementina
CiPaw.03G215500 Carya illinoinensis
CiPaw.03G215600 Carya illinoinensis
CiPaw.03G215700 Carya illinoinensis
CiPaw.04G149200 Carya illinoinensis
CiPaw.15G038600 Carya illinoinensis
CiPaw.16G028400 Carya illinoinensis
ClCG03G015520 Citrullus lanatus
ClCG05G017870 Citrullus lanatus
COL.COLO4_18195 Corchorus olitorius
COL.COLO4_21062 Corchorus olitorius
Cpa.g.sc61.39 Carica papaya
Cpa.g.sc7.182 Carica papaya
CsaV3_1G040530 Cucumis sativus L.
CsaV3_4G035640 Cucumis sativus L.
CSS0002010 Camellia sinensis var. sinensis
CSS0010318 Camellia sinensis var. sinensis
CSS0012916 Camellia sinensis var. sinensis
CSS0026514 Camellia sinensis var. sinensis
DCAR_000797 Daucus carota
DCAR_004423 Daucus carota
DCAR_030907 Daucus carota
Dinv22895 Davidia involucrata
Dinv27989 Davidia involucrata
Dinv36772 Davidia involucrata
Duzib150G0266 Durio zibethinus
Duzib150G1021 Durio zibethinus
Duzib168G2392 Durio zibethinus
ECA233G4745 Erigeron canadensis
ECA236G2512 Erigeron canadensis
ECA236G3063 Erigeron canadensis
ECA240G0667 Erigeron canadensis
ECA240G1171 Erigeron canadensis
ECA240G4159 Erigeron canadensis
EL10Ac2g03879 Beta vulgaris
Eucgr.C00651 Eucalyptus grandis
Eucgr.C00886 Eucalyptus grandis
Eucgr.C00891 Eucalyptus grandis
Eucgr.C03051 Eucalyptus grandis
Eucgr.D00713 Eucalyptus grandis
FAN15G1416 Fragaria x ananassa
FAN19G3195 Fragaria x ananassa
FAN20G2042 Fragaria x ananassa
FAN23G1498 Fragaria x ananassa
FAN23G1561 Fragaria x ananassa
FAN24G2308 Fragaria x ananassa
FAN26G0211 Fragaria x ananassa
FAN26G2487 Fragaria x ananassa
FAN27G2230 Fragaria x ananassa
FAN28G1161 Fragaria x ananassa
FvH4_1g07560 Fragaria vesca
FvH4_2g31830 Fragaria vesca
Glyma.09G063300 Glycine max
Glyma.13G104500 Glycine max
Glyma.14G095300 Glycine max
Glyma.15G170100 Glycine max
Gohir.A06G087500 Gossypium hirsutum
Gohir.A07G011600 Gossypium hirsutum
Gohir.A07G022100 Gossypium hirsutum
Gohir.A13G193250 Gossypium hirsutum
Gohir.A13G193300 Gossypium hirsutum
Gohir.D06G086900 Gossypium hirsutum
Gohir.D07G011400 Gossypium hirsutum
Gohir.D07G022000 Gossypium hirsutum
Gohir.D13G199000 Gossypium hirsutum
Gohir.D13G199100 Gossypium hirsutum
Gorai.001G012100 Gossypium raimondii
Gorai.001G022700 Gossypium raimondii
Gorai.010G100300 Gossypium raimondii
Gorai.013G227500 Gossypium raimondii
Gorai.013G227600 Gossypium raimondii
HanXRQChr03g0060491 Helianthus annuus
HanXRQChr03g0079531 Helianthus annuus
HanXRQChr04g0126211 Helianthus annuus
HanXRQChr06g0178571 Helianthus annuus
HanXRQChr07g0192621 Helianthus annuus
Haze_18179 Corylus avellana
Haze_18186 Corylus avellana
Haze_25915 Corylus avellana
Hma1.2p1_0163F.1_g073030 Hydrangea macrophylla
Hma1.2p1_0482F.1_g162400 Hydrangea macrophylla
Hma1.2p1_0798F.1_g219850 Hydrangea macrophylla
Hma1.2p1_0798F.1_g219880 Hydrangea macrophylla
Hma1.2p1_1051F.1_g252130 Hydrangea macrophylla
Hma1.2p1_2410F.1_g321555 Hydrangea macrophylla
Hma1.2p1_2481F.1_g322960 Hydrangea macrophylla
HPP92_022910 Vanilla planifolia
Lalb_Chr08g0232161 Lupinus albus
Lalb_Chr12g0199811 Lupinus albus
Lalb_Chr14g0366301 Lupinus albus
Lalb_Chr22g0356091 Lupinus albus
Lj5g0000472 Lotus japonicus
Lj6g0012536 Lotus japonicus
Lj7A676T37 Lonicera japonica
Lj7P270T5 Lonicera japonica
Lsat_1_v5_gn_5_47580 Lactuca sativa
Lsat_1_v5_gn_6_13421 Lactuca sativa
Lsat_1_v5_gn_7_37001 Lactuca sativa
Lsat_1_v5_gn_8_87760 Lactuca sativa
Manes.03G034300 Manihot esculenta
Manes.16G080900 Manihot esculenta
Manes.16G101500 Manihot esculenta
MBI04_g31165_MAGBIO Magnolia biondii
MBI04_g31167_MAGBIO Magnolia biondii
MBI04_g31168_MAGBIO Magnolia biondii
MBI04_g31169_MAGBIO Magnolia biondii
MBI04_g31172_MAGBIO Magnolia biondii
MBI04_g31173_MAGBIO Magnolia biondii
MBI04_g35661_MAGBIO Magnolia biondii
MD02G1080400 Malus domestica
MD08G1062500 Malus domestica
MD15G1059100 Malus domestica
MD15G1207800 Malus domestica
Medtr1g016100 Medicago truncatula
Medtr2g039320 Medicago truncatula
Medtr4g126170 Medicago truncatula
Medtr4g126210 Medicago truncatula
MELO3C015480.2 Cucumis melo
MELO3C016871.2 Cucumis melo
Migut.A00134 Erythranthe guttata
Migut.E01567 Erythranthe guttata
Migut.J00621 Erythranthe guttata
MSTRG.14057 Avicennia marina
MSTRG.1684 Avicennia marina
MSTRG.19510 Avicennia marina
MSTRG.25948 Avicennia marina
MSTRG.6063 Avicennia marina
Nitab4.5_0000095g0170 Nicotiana tabacum
Nitab4.5_0001367g0050 Nicotiana tabacum
Nitab4.5_0003648g0010 Nicotiana tabacum
Nitab4.5_0003939g0020 Nicotiana tabacum
Nitab4.5_0006570g0030 Nicotiana tabacum
Nn6g35487 Nelumbo nucifera
Nn8g38853 Nelumbo nucifera
Oeu006001.1 Olea europaea
Oeu016763.1 Olea europaea
Oeu036333.1 Olea europaea
Oeu041228.1 Olea europaea
Oeu041231.1 Olea europaea
Oeu041232.1 Olea europaea
Oeu041233.1 Olea europaea
Oeu041234.1 Olea europaea
Oeu041236.1 Olea europaea
Oeu059606.1 Olea europaea
Os05g0540900 Oryza sativa ssp. japonica
Os06g0566500 Oryza sativa ssp. japonica
Peaxi162Scf00259g00111 Petunia axillaris
Peaxi162Scf01444g00003 Petunia axillaris
Peaxi162Scf01461g00029 Petunia axillaris
PGR031G2556 Punica granatum
PGR044G2218 Punica granatum
PGR142G4283 Punica granatum
PGSC0003DMG400017835 Solanum tuberosum
PGSC0003DMG400021389 Solanum tuberosum
PGSC0003DMG400035559 Solanum tuberosum
Phvul.001G036100 Phaseolus vulgaris
Phvul.003G136600 Phaseolus vulgaris
Phvul.009G232000 Phaseolus vulgaris
Potri.006G152200 Populus trichocarpa
Potri.006G228800 Populus trichocarpa
Potri.018G053000 Populus trichocarpa
Prupe.1G411600 Prunus persica
Prupe.7G209100 Prunus persica
Psat1g140840 Pisum sativum
Psat4g015240 Pisum sativum
Psat4g015560 Pisum sativum
Psat4g015680 Pisum sativum
Psat4g015760 Pisum sativum
Psat6g020080 Pisum sativum
PSO063G0636 Papaver somniferum
PSO210G0663 Papaver somniferum
PSO210G1183 Papaver somniferum
PSO210G3168 Papaver somniferum
PSO832G3506 Papaver somniferum
QL02p001128 Quercus lobata
QL02p062593 Quercus lobata
RcHm_v2.0_Chr6g0310991 Rosa chinensis
Rhsim05G0020400 Rhododendron simsii
Rhsim11G0044000 Rhododendron simsii
Sabra06G0120500 Salix brachista
Sabra06G0177200 Salix brachista
Sabra18G0048700 Salix brachista
SalBow4G0805 Salvia bowleyana
SalBow6G1974 Salvia bowleyana
Sc08g0008500 Simmondsia chinensis
Sc09g0009840 Simmondsia chinensis
Sed0011201 Sechium edule
Sed0018033 Sechium edule
SEGI_05314 Sequoiadendron giganteum
SEGI_13547 Sequoiadendron giganteum
SEGI_14039 Sequoiadendron giganteum
SEGI_35235 Sequoiadendron giganteum
SGA_v2.0_scaffold163G38027 Striga asiatica
SGA_v2.0_scaffold169G38695 Striga asiatica
SGA_v2.0_scaffold62G21613 Striga asiatica
Solyc05g018820.1 Solanum lycopersicum
Solyc07g039380.3 Solanum lycopersicum
Solyc08g065150.1 Solanum lycopersicum
Sopen05g016140 Solanum pennellii
Sopen07g018730 Solanum pennellii
Sopen08g018730 Solanum pennellii
Sp4g05990 Schrenkiella parvula
Sp6g18690 Schrenkiella parvula
Sp7g24150 Schrenkiella parvula
TAR383G0406 Trochodendron aralioides
TAR624G1451 Trochodendron aralioides
TAR636G2243 Trochodendron aralioides
THA.LOC104803728 Tarenaya hassleriana
THA.LOC104803792 Tarenaya hassleriana
THA.LOC104811745 Tarenaya hassleriana
THA.LOC104817760 Tarenaya hassleriana
THA.LOC104824642 Tarenaya hassleriana
Thecc.09G054200 Theobroma cacao
Thecc.09G088400 Theobroma cacao
Thhalv10002336m.g Eutrema salsugineum
Thhalv10013847m.g Eutrema salsugineum
Thhalv10025915m.g Eutrema salsugineum
TPR.G13085 Trifolium pratense
TPR.G17928 Trifolium pratense
TPR.G28379 Trifolium pratense
TPR.G30764 Trifolium pratense
TPR.G9473 Trifolium pratense
TWI34G0810 Tripterygium wilfordii
TWI63G0843 Tripterygium wilfordii
TWI63G0889 Tripterygium wilfordii
unitig_32.g11468 Utricularia gibba
unitig_748.g7525 Utricularia gibba
vmacro00140 Vaccinium macrocarpon
vmacro17244 Vaccinium macrocarpon
VMungo0647G2239 Vigna mungo
VMungo1215G3160 Vigna mungo
VMungo1309G0962 Vigna mungo
Zm00001eb383930 Zea mays

User provided reference genes

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