Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p32810 Brassica napus
A06p43650 Brassica napus
A09p23870 Brassica napus
Aa31LG2G7680 Aethionema arabicum
Aa31LG2G7700 Aethionema arabicum
Aa31LG2G7710 Aethionema arabicum
Aa31LG2G7720 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4033 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2070 Anthoceros agrestis
Actinidia01648 Actinidia chinensis
Actinidia11715 Actinidia chinensis
Actinidia12258 Actinidia chinensis
Ah.02g128620 Amaranthus hybridus
Ah.02g128630 Amaranthus hybridus
Ah.03g133320 Amaranthus hybridus
AL5G11610 Arabidopsis lyrata
AL5G11620 Arabidopsis lyrata
Aqoxy6G00007 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1J7XHV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.282NXT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.36FMA1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3BD6JH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3Y21K6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6GY8VP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7E9YQG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8A6SW6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.98WGT1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ACQ7NG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BAS8RG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EDU7SQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EN3UZ1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GI1MGH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H8DZ4K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J7Z27H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JCD420 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JYM2SW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LA7PQB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M7HUWS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PTS91X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SC5H60 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TW0FD0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U95838 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UH56EU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UK2H4C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UPN5QI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WEM5LE Arachis hypogaea
AT2G02380 Arabidopsis thaliana
AT2G02390 Arabidopsis thaliana
ATR0810G141 Amborella trichopoda
ATR1089G131 Amborella trichopoda
Atru.chr5.308 Acer truncatum
Atru.chr6.1245 Acer truncatum
Atru.chr6.44 Acer truncatum
Atru.chr6.53 Acer truncatum
AUR62004214 Chenopodium quinoa
AUR62005495 Chenopodium quinoa
AUR62012694 Chenopodium quinoa
AUR62013634 Chenopodium quinoa
AUR62024246 Chenopodium quinoa
AUR62032505 Chenopodium quinoa
BcaB07g30340 Brassica carinata
BcaB07g30701 Brassica carinata
BcaC06g31235 Brassica carinata
BcaC06g34055 Brassica carinata
BolC2t11129H Brassica oleracea
BolC4t23350H Brassica oleracea
BolC7t43832H Brassica oleracea
BolC9t55937H Brassica oleracea
BraA01t04265Z Brassica rapa
BraA02t08299Z Brassica rapa
BraA06t27247Z Brassica rapa
BraA09t37992Z Brassica rapa
C02p50500 Brassica napus
C07p33210 Brassica napus
C09p30730 Brassica napus
CAN.G1379.24 Capsicum annuum
CAN.G1379.25 Capsicum annuum
CAN.G388.16 Capsicum annuum
CANSAT01G0677 Cannabis sativa
CANSAT01G3100 Cannabis sativa
CARHR144970 Cardamine hirsuta
CARHR215290 Cardamine hirsuta
Carub.0002s1531 Capsella rubella
Carub.0005s0143 Capsella rubella
Carub.0005s0144 Capsella rubella
Ca_02850_v3 Cicer arietinum L.
Ca_28526_v3 Cicer arietinum L.
Ca_31175_v3 Cicer arietinum L.
CBR_g1016 Chara braunii
CBR_g49989 Chara braunii
CBR_g49991 Chara braunii
Cc02_g36720 Coffea canephora
Cc02_g36740 Coffea canephora
Cc02_g36750 Coffea canephora
Cc02_g36760 Coffea canephora
CDE04G1228 Ceratophyllum demersum
Ciclev10002463m.g Citrus clementina
Ciclev10002464m.g Citrus clementina
Ciclev10003032m.g Citrus clementina
Ciclev10022030m.g Citrus clementina
CiPaw.10G071200 Carya illinoinensis
CiPaw.12G009400 Carya illinoinensis
CiPaw.12G009500 Carya illinoinensis
ClCG02G000340 Citrullus lanatus
ClCG05G002230 Citrullus lanatus
COL.COLO4_12547 Corchorus olitorius
COL.COLO4_29485 Corchorus olitorius
COL.COLO4_31202 Corchorus olitorius
COL.COLO4_31204 Corchorus olitorius
Cpa.g.sc17.27 Carica papaya
Cpa.g.sc18.114 Carica papaya
CsaV3_2G019500 Cucumis sativus L.
CsaV3_2G019530 Cucumis sativus L.
CsaV3_3G009690 Cucumis sativus L.
CSS0009949 Camellia sinensis var. sinensis
DCAR_003265 Daucus carota
DCAR_022319 Daucus carota
DCAR_029456 Daucus carota
Dinv30979 Davidia involucrata
Duzib138G1114 Durio zibethinus
Duzib235G0539 Durio zibethinus
ECA238G3078 Erigeron canadensis
ECA238G4456 Erigeron canadensis
ECA240G2358 Erigeron canadensis
EL10Ac1g00889 Beta vulgaris
EL10Ac1g00891 Beta vulgaris
EL10Ac6g13936 Beta vulgaris
Eucgr.C00044 Eucalyptus grandis
Eucgr.D01135 Eucalyptus grandis
Eucgr.D02452 Eucalyptus grandis
FAN01G2849 Fragaria x ananassa
FAN03G3302 Fragaria x ananassa
FAN04G0855 Fragaria x ananassa
FAN06G1518 Fragaria x ananassa
FAN08G2242 Fragaria x ananassa
FAN10G0740 Fragaria x ananassa
FAN18G0383 Fragaria x ananassa
FvH4_5g27160 Fragaria vesca
FvH4_7g11880 Fragaria vesca
Glyma.01G142800 Glycine max
Glyma.17G003200 Glycine max
Glyma.17G003300 Glycine max
Gohir.A10G068200 Gossypium hirsutum
Gohir.A12G101900 Gossypium hirsutum
Gohir.D10G083000 Gossypium hirsutum
Gohir.D10G083050 Gossypium hirsutum
Gohir.D12G104900 Gossypium hirsutum
Gorai.008G114200 Gossypium raimondii
Gorai.011G090100 Gossypium raimondii
Gorai.011G090200 Gossypium raimondii
GSVIVG01023109001 Vitis vinifera
GSVIVG01023110001 Vitis vinifera
GSVIVG01023120001 Vitis vinifera
GSVIVG01027608001 Vitis vinifera
HanXRQChr02g0050171 Helianthus annuus
HanXRQChr02g0052711 Helianthus annuus
HanXRQChr12g0384171 Helianthus annuus
HanXRQChr14g0445481 Helianthus annuus
HanXRQChr14g0445491 Helianthus annuus
HanXRQChr16g0527561 Helianthus annuus
HanXRQChr16g0527571 Helianthus annuus
HanXRQChr16g0527581 Helianthus annuus
Haze_09949 Corylus avellana
Haze_26357 Corylus avellana
Hma1.2p1_0033F.1_g021070 Hydrangea macrophylla
Hma1.2p1_0157F.1_g069340 Hydrangea macrophylla
Hma1.2p1_0157F.1_g069370 Hydrangea macrophylla
HPP92_005604 Vanilla planifolia
HPP92_009192 Vanilla planifolia
Hund27346 Selenicereus undatus
Lalb_Chr21g0314421 Lupinus albus
Lalb_Chr21g0314441 Lupinus albus
Lj4g0015462 Lotus japonicus
Lj5A308T32 Lonicera japonica
Lj5A309G32 Lonicera japonica
Lj5A309T26 Lonicera japonica
Lj6g0017557 Lotus japonicus
Lj9C241G3 Lonicera japonica
Lsat_1_v5_gn_2_66341 Lactuca sativa
Lsat_1_v5_gn_7_69741 Lactuca sativa
Lsat_1_v5_gn_9_81781 Lactuca sativa
Lsat_1_v5_gn_9_81801 Lactuca sativa
Lsat_1_v5_gn_9_81821 Lactuca sativa
Manes.01G266000 Manihot esculenta
Manes.06G016600 Manihot esculenta
Mapoly0048s0066 Marchantia polymorpha
MBI03_g28955_MAGBIO Magnolia biondii
MBI04_g35275_MAGBIO Magnolia biondii
MBI06_g17056_MAGBIO Magnolia biondii
MBI06_g17058_MAGBIO Magnolia biondii
MBI06_g17059_MAGBIO Magnolia biondii
MBI06_g17060_MAGBIO Magnolia biondii
MD02G1204200 Malus domestica
MD02G1204400 Malus domestica
MD07G1121100 Malus domestica
MD08G1250500 Malus domestica
MD15G1445700 Malus domestica
Medtr1568s0020 Medicago truncatula
Medtr4g134360 Medicago truncatula
Medtr4g134370 Medicago truncatula
Medtr4g134380 Medicago truncatula
MELO3C006189.2 Cucumis melo
MELO3C023220.2 Cucumis melo
MELO3C023224.2 Cucumis melo
MSTRG.27894 Avicennia marina
MSTRG.4892 Avicennia marina
Nitab4.5_0000457g0340 Nicotiana tabacum
Nitab4.5_0001085g0020 Nicotiana tabacum
Nitab4.5_0004176g0020 Nicotiana tabacum
Nitab4.5_0005372g0090 Nicotiana tabacum
Nn5g27085 Nelumbo nucifera
Os02g0564000 Oryza sativa ssp. japonica
Os11g0245100 Oryza sativa ssp. japonica
Os12g0210200 Oryza sativa ssp. japonica
Os12g0210300 Oryza sativa ssp. japonica
Peaxi162Scf00021g01724 Petunia axillaris
Peaxi162Scf00194g00816 Petunia axillaris
PGR142G0425 Punica granatum
PGR142G3082 Punica granatum
PGSC0003DMG400012762 Solanum tuberosum
PGSC0003DMG400018269 Solanum tuberosum
Phvul.003G089700 Phaseolus vulgaris
Phvul.010G084100 Phaseolus vulgaris
Potri.004G232600 Populus trichocarpa
Potri.014G069600 Populus trichocarpa
Pp3c1_32920 Physcomitrium patens
Prupe.1G587700 Prunus persica
Prupe.2G145300 Prunus persica
Psat2g129360 Pisum sativum
Psat4g002040 Pisum sativum
PSO017G3588 Papaver somniferum
PSO017G5434 Papaver somniferum
PSO478G2080 Papaver somniferum
PSO782G1709 Papaver somniferum
PSO782G3938 Papaver somniferum
QL02p104178 Quercus lobata
QL02p104225 Quercus lobata
QL02p104232 Quercus lobata
QL02p104283 Quercus lobata
QL07p001494 Quercus lobata
QL07p001520 Quercus lobata
QL07p001524 Quercus lobata
RcHm_v2.0_Chr1g0350551 Rosa chinensis
RcHm_v2.0_Chr7g0218201 Rosa chinensis
RcHm_v2.0_Chr7g0218231 Rosa chinensis
RcHm_v2.0_Chr7g0218251 Rosa chinensis
Rhsim05G0103400 Rhododendron simsii
Rhsim07G0027500 Rhododendron simsii
Rhsim11G0112100 Rhododendron simsii
Rhsim11G0112700 Rhododendron simsii
Rhsim11G0112900 Rhododendron simsii
Rhsim11G0113300 Rhododendron simsii
Sabra01G0178100 Salix brachista
Sabra14G0049300 Salix brachista
SalBow3G3421 Salvia bowleyana
SalBow3G4388 Salvia bowleyana
SalBow5G1731 Salvia bowleyana
SalBow5G4353 Salvia bowleyana
Sc02g0002600 Simmondsia chinensis
Sed0002014 Sechium edule
Sed0015749 Sechium edule
Sed0028209 Sechium edule
SEGI_01169 Sequoiadendron giganteum
SEGI_09230 Sequoiadendron giganteum
SEGI_11277 Sequoiadendron giganteum
SEGI_36104 Sequoiadendron giganteum
SEGI_39961 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05581 Striga asiatica
SGA_v2.0_scaffold401G50973 Striga asiatica
SGA_v2.0_scaffold401G50974 Striga asiatica
SMO118G0012 Selaginella moellendorffii
SMO203G0007 Selaginella moellendorffii
Solyc01g091330.4 Solanum lycopersicum
Solyc01g102660.4 Solanum lycopersicum
Sopen01g037070 Solanum pennellii
Sopen01g045070 Solanum pennellii
Sp2g13660 Schrenkiella parvula
TAR376G0291 Trochodendron aralioides
TAR628G0385 Trochodendron aralioides
TAR629G2783 Trochodendron aralioides
THA.LOC104801774 Tarenaya hassleriana
Thecc.01G376300 Theobroma cacao
Thecc.10G124800 Theobroma cacao
Thecc.10G124900 Theobroma cacao
Thhalv10004878m.g Eutrema salsugineum
Thhalv10004880m.g Eutrema salsugineum
TPR.G5944 Trifolium pratense
TPR.G5979 Trifolium pratense
TWI23G0377 Tripterygium wilfordii
TWI23G0539 Tripterygium wilfordii
TWI59G1044 Tripterygium wilfordii
unitig_8.g3612 Utricularia gibba
vmacro01636 Vaccinium macrocarpon
vmacro13400 Vaccinium macrocarpon
VMungo0300G0002 Vigna mungo
VMungo0331G0072 Vigna mungo
VMungo1215G2397 Vigna mungo
VMungo1215G3410 Vigna mungo
Zm00001eb138300 Zea mays
Zm00001eb244170 Zea mays
Zm00001eb411190 Zea mays

User provided reference genes

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