Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p38290 Brassica napus
A10p08460 Brassica napus
Aa31LG3G4190 Aethionema arabicum
Aa31LG3G5930 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3704 Anthoceros agrestis
Actinidia19382 Actinidia chinensis
Actinidia19383 Actinidia chinensis
Actinidia29747 Actinidia chinensis
Actinidia31613 Actinidia chinensis
Actinidia33882 Actinidia chinensis
Ah.08g218130 Amaranthus hybridus
Ah.10g035990 Amaranthus hybridus
Ah.15g095350 Amaranthus hybridus
Ah.16g104210 Amaranthus hybridus
AL3G22500 Arabidopsis lyrata
AL5G17460 Arabidopsis lyrata
AL6G39810 Arabidopsis lyrata
AL8G22770 Arabidopsis lyrata
AL8G24340 Arabidopsis lyrata
Aqoxy4G02355 Aquilegia oxysepala
Aqoxy5G03593 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8B0NWX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DMHI6U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E74QZH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H0K84D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UG9TCQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z155YF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZF2ZKW Arachis hypogaea
AT3G10960 Arabidopsis thaliana
AT5G50300 Arabidopsis thaliana
ATR0001G046 Amborella trichopoda
ATR0681G275 Amborella trichopoda
Atru.chr1.138 Acer truncatum
Atru.chr12.154 Acer truncatum
Atru.chr12.155 Acer truncatum
Atru.chr8.2377 Acer truncatum
Atru.chr9.1004 Acer truncatum
AUR62001272 Chenopodium quinoa
AUR62001273 Chenopodium quinoa
AUR62003432 Chenopodium quinoa
AUR62012356 Chenopodium quinoa
AUR62025733 Chenopodium quinoa
AUR62025734 Chenopodium quinoa
BcaB04g21163 Brassica carinata
BcaB06g25665 Brassica carinata
BcaB07g32776 Brassica carinata
BcaB08g35396 Brassica carinata
BcaC04g20808 Brassica carinata
BcaC05g29415 Brassica carinata
BcaC09g48142 Brassica carinata
BolC9t56763H Brassica oleracea
BraSC37t46160Z Brassica rapa
C05p57110 Brassica napus
C09p38930 Brassica napus
CAN.G17.12 Capsicum annuum
CAN.G352.4 Capsicum annuum
CANSAT56G0901 Cannabis sativa
CANSAT80G0805 Cannabis sativa
CARHR085540 Cardamine hirsuta
CARHR258250 Cardamine hirsuta
Carub.0003s1023 Capsella rubella
Carub.0008s1034 Capsella rubella
Ca_16093_v3 Cicer arietinum L.
Ca_16883_v3 Cicer arietinum L.
Ca_29328_v3 Cicer arietinum L.
Cc02_g05550 Coffea canephora
Cc04_g10480 Coffea canephora
CDE04G3745 Ceratophyllum demersum
CDE06G0462 Ceratophyllum demersum
CDE07G1558 Ceratophyllum demersum
Cfa001225 Carpinus fangiana
Cfa018896 Carpinus fangiana
Ciclev10011350m.g Citrus clementina
Ciclev10023368m.g Citrus clementina
Ciclev10031064m.g Citrus clementina
CiPaw.01G304900 Carya illinoinensis
CiPaw.11G012500 Carya illinoinensis
ClCG04G006450 Citrullus lanatus
ClCG06G017680 Citrullus lanatus
ClCG11G005740 Citrullus lanatus
COL.COLO4_05055 Corchorus olitorius
COL.COLO4_08555 Corchorus olitorius
COL.COLO4_30008 Corchorus olitorius
Cpa.g.sc19.84 Carica papaya
Cpa.g.sc4.66 Carica papaya
Cre06.g260700 Chlamydomonas reinhardtii
Cre10.g448450 Chlamydomonas reinhardtii
CsaV3_1G000780 Cucumis sativus L.
CsaV3_6G002230 Cucumis sativus L.
CSS0004320 Camellia sinensis var. sinensis
CSS0005258 Camellia sinensis var. sinensis
CSS0018329 Camellia sinensis var. sinensis
CSS0025271 Camellia sinensis var. sinensis
DCAR_026207 Daucus carota
Dinv07365 Davidia involucrata
Dinv10546 Davidia involucrata
Dinv11109 Davidia involucrata
Dinv11243 Davidia involucrata
Dinv21829 Davidia involucrata
Dinv25321 Davidia involucrata
Dinv34744 Davidia involucrata
Dinv38475 Davidia involucrata
Dinv38476 Davidia involucrata
Duzib114G0763 Durio zibethinus
Duzib128G1349 Durio zibethinus
Duzib212G1047 Durio zibethinus
ECA232G2983 Erigeron canadensis
ECA236G3609 Erigeron canadensis
ECA238G2754 Erigeron canadensis
ECA238G3566 Erigeron canadensis
ECA247G3306 Erigeron canadensis
EL10Ac2g04258 Beta vulgaris
EL10Ac7g18069 Beta vulgaris
Eucgr.A00710 Eucalyptus grandis
Eucgr.J00134 Eucalyptus grandis
Eucgr.K02759 Eucalyptus grandis
FAN01G2957 Fragaria x ananassa
FAN03G2388 Fragaria x ananassa
FAN04G0118 Fragaria x ananassa
FAN06G4069 Fragaria x ananassa
FAN08G1964 Fragaria x ananassa
FAN10G2025 Fragaria x ananassa
FAN13G0710 Fragaria x ananassa
FAN18G2968 Fragaria x ananassa
FAN20G1915 Fragaria x ananassa
FvH4_5g07290 Fragaria vesca
FvH4_7g02562 Fragaria vesca
FvH4_7g25660 Fragaria vesca
Glyma.04G192500 Glycine max
Glyma.04G220800 Glycine max
Glyma.06G145100 Glycine max
Glyma.06G173300 Glycine max
Glyma.09G276800 Glycine max
Glyma.18G212500 Glycine max
Gohir.A02G004500 Gossypium hirsutum
Gohir.A03G062500 Gossypium hirsutum
Gohir.A05G402300 Gossypium hirsutum
Gohir.A07G053800 Gossypium hirsutum
Gohir.A10G180600 Gossypium hirsutum
Gohir.D02G004850 Gossypium hirsutum
Gohir.D03G103600 Gossypium hirsutum
Gohir.D04G013200 Gossypium hirsutum
Gohir.D07G058200 Gossypium hirsutum
Gohir.D10G187400 Gossypium hirsutum
Gorai.001G061700 Gossypium raimondii
Gorai.003G109200 Gossypium raimondii
Gorai.005G005500 Gossypium raimondii
Gorai.011G210200 Gossypium raimondii
Gorai.012G015500 Gossypium raimondii
GSVIVG01007551001 Vitis vinifera
GSVIVG01030208001 Vitis vinifera
GSVIVG01032706001 Vitis vinifera
HanXRQChr04g0100741 Helianthus annuus
HanXRQChr07g0203601 Helianthus annuus
HanXRQChr10g0290881 Helianthus annuus
Haze_07280 Corylus avellana
Haze_17337 Corylus avellana
Hma1.2p1_0046F.1_g027580 Hydrangea macrophylla
Hma1.2p1_0292F.1_g115810 Hydrangea macrophylla
Hma1.2p1_1240F.1_g269500 Hydrangea macrophylla
Hma1.2p1_2148F.1_g315100 Hydrangea macrophylla
HPP92_008077 Vanilla planifolia
HPP92_011981 Vanilla planifolia
HPP92_011984 Vanilla planifolia
HPP92_011985 Vanilla planifolia
Lalb_Chr08g0238971 Lupinus albus
Lalb_Chr11g0069741 Lupinus albus
Lalb_Chr23g0272291 Lupinus albus
Lalb_Chr23g0273481 Lupinus albus
Lj1g0016251 Lotus japonicus
Lj1g0017117 Lotus japonicus
Lj1g0019480 Lotus japonicus
Lj2A62T69 Lonicera japonica
Lj5C100T7 Lonicera japonica
Lj8A57T59 Lonicera japonica
Lsat_1_v5_gn_1_29461 Lactuca sativa
Lsat_1_v5_gn_2_125341 Lactuca sativa
Lsat_1_v5_gn_8_119641 Lactuca sativa
Lsat_1_v5_gn_9_59340 Lactuca sativa
Manes.06G114800 Manihot esculenta
Manes.07G137700 Manihot esculenta
MBI11_g27345_MAGBIO Magnolia biondii
MBI11_g29153_MAGBIO Magnolia biondii
MBI15_g31436_MAGBIO Magnolia biondii
MD01G1163900 Malus domestica
MD06G1157500 Malus domestica
MD07G1231600 Malus domestica
MD14G1164200 Malus domestica
Medtr3g075120 Medicago truncatula
Medtr3g094320 Medicago truncatula
Medtr7g072600 Medicago truncatula
MELO3C020000.2 Cucumis melo
MELO3C026215.2 Cucumis melo
Migut.F00591 Erythranthe guttata
Migut.I00258 Erythranthe guttata
MSTRG.11297 Avicennia marina
MSTRG.22931 Avicennia marina
MSTRG.27275 Avicennia marina
MSTRG.8368 Avicennia marina
Nitab4.5_0000109g0470 Nicotiana tabacum
Nitab4.5_0003282g0100 Nicotiana tabacum
Nitab4.5_0010042g0020 Nicotiana tabacum
Nn1g05339 Nelumbo nucifera
Nn2g10353 Nelumbo nucifera
Nn3g16586 Nelumbo nucifera
Nn4g22469 Nelumbo nucifera
Nn5g26887 Nelumbo nucifera
Oeu020110.1 Olea europaea
Oeu036028.1 Olea europaea
Oeu036531.1 Olea europaea
Oeu044158.1 Olea europaea
Oeu044607.1 Olea europaea
Os05g0332600 Oryza sativa ssp. japonica
Os11g0427700 Oryza sativa ssp. japonica
Peaxi162Scf00089g00072 Petunia axillaris
Peaxi162Scf00284g00082 Petunia axillaris
Peaxi162Scf00739g00001 Petunia axillaris
PGR031G0328 Punica granatum
PGR044G0077 Punica granatum
PGR044G0769 Punica granatum
PGR044G1386 Punica granatum
PGSC0003DMG400015237 Solanum tuberosum
PGSC0003DMG400029074 Solanum tuberosum
Phvul.008G084300 Phaseolus vulgaris
Phvul.009G140900 Phaseolus vulgaris
Phvul.009G169200 Phaseolus vulgaris
Potri.013G083300 Populus trichocarpa
Potri.015G090000 Populus trichocarpa
Potri.016G133800 Populus trichocarpa
Pp3c19_3540 Physcomitrium patens
PRCOL_00001668 Prasinoderma coloniale
PRCOL_00006252 Prasinoderma coloniale
Prupe.2G261700 Prunus persica
Prupe.5G155400 Prunus persica
Prupe.5G157500 Prunus persica
Psat5g065880 Pisum sativum
Psat5g141760 Pisum sativum
PSO063G0415 Papaver somniferum
PSO339G6736 Papaver somniferum
PSO384G3433 Papaver somniferum
QL07p032695 Quercus lobata
QL08p064547 Quercus lobata
QL10p005331 Quercus lobata
RcHm_v2.0_Chr1g0371841 Rosa chinensis
RcHm_v2.0_Chr7g0191341 Rosa chinensis
Rhsim03G0150500 Rhododendron simsii
Rhsim03G0150600 Rhododendron simsii
Rhsim08G0184600 Rhododendron simsii
Rhsim09G0184200 Rhododendron simsii
Sabra04G0151300 Salix brachista
Sabra12G0067800 Salix brachista
Sabra13G0072200 Salix brachista
Sabra15G0112200 Salix brachista
SalBow3G3262 Salvia bowleyana
SalBow7G1399 Salvia bowleyana
Sc10g0002900 Simmondsia chinensis
Sc22g0004010 Simmondsia chinensis
Sed0006166 Sechium edule
Sed0014183 Sechium edule
Sed0016280 Sechium edule
Sed0021192 Sechium edule
SEGI_28716 Sequoiadendron giganteum
SGA_v2.0_scaffold275G46604 Striga asiatica
SGA_v2.0_scaffold60G20903 Striga asiatica
SHI10814 Sapria himalayana
SMO200G0070 Selaginella moellendorffii
SMO200G0186 Selaginella moellendorffii
SMO338G0025 Selaginella moellendorffii
Solyc03g111400.1 Solanum lycopersicum
Solyc06g050250.1 Solanum lycopersicum
Sopen03g030530 Solanum pennellii
Sopen06g015750 Solanum pennellii
Sp3g09290 Schrenkiella parvula
Sp6g12380 Schrenkiella parvula
TAR623G0715 Trochodendron aralioides
TAR626G1730 Trochodendron aralioides
TAR633G0219 Trochodendron aralioides
TAR636G2127 Trochodendron aralioides
THA.LOC104811606 Tarenaya hassleriana
THA.LOC104816516 Tarenaya hassleriana
Thecc.03G122200 Theobroma cacao
Thecc.04G154600 Theobroma cacao
Thecc.10G176100 Theobroma cacao
Thhalv10013231m.g Eutrema salsugineum
Thhalv10020384m.g Eutrema salsugineum
Thhalv10024046m.g Eutrema salsugineum
TPR.G16122 Trifolium pratense
TPR.G24217 Trifolium pratense
TPR.G26161 Trifolium pratense
TWI09G1345 Tripterygium wilfordii
unitig_60.g25665 Utricularia gibba
unitig_699.g19730 Utricularia gibba
vmacro06930 Vaccinium macrocarpon
vmacro09975 Vaccinium macrocarpon
vmacro19245 Vaccinium macrocarpon
VMungo0464G0326 Vigna mungo
VMungo1309G0117 Vigna mungo
VMungo1309G1399 Vigna mungo
VMungo1383G1660 Vigna mungo
Zm00001eb112150 Zea mays
Zm00001eb167810 Zea mays
Zm00001eb286740 Zea mays

User provided reference genes

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