Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p20900 Brassica napus
A07p09100 Brassica napus
A09p65780 Brassica napus
Aa31csc22G210 Aethionema arabicum
Aa31LG4G15540 Aethionema arabicum
Actinidia07039 Actinidia chinensis
Actinidia37206 Actinidia chinensis
Ah.08g219480 Amaranthus hybridus
Ah.13g072530 Amaranthus hybridus
Ah.15g097140 Amaranthus hybridus
AL1G19120 Arabidopsis lyrata
AL3G38010 Arabidopsis lyrata
AL5G25400 Arabidopsis lyrata
Aqoxy2G02113 Aquilegia oxysepala
Aqoxy2G03691 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1H464M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.253NGJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6QGD4T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FT1LK2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H9TV53 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RF6BAC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZIV4MF Arachis hypogaea
AT1G08670 Arabidopsis thaliana
AT3G23350 Arabidopsis thaliana
AT3G46540 Arabidopsis thaliana
ATR0559G215 Amborella trichopoda
ATR0736G040 Amborella trichopoda
ATR1128G051 Amborella trichopoda
Atru.chr12.454 Acer truncatum
Atru.chr12.476 Acer truncatum
Atru.chr3.3895 Acer truncatum
Atru.chr4.2029 Acer truncatum
AUR62001793 Chenopodium quinoa
AUR62002153 Chenopodium quinoa
AUR62009581 Chenopodium quinoa
AUR62015554 Chenopodium quinoa
AUR62036775 Chenopodium quinoa
AUR62040978 Chenopodium quinoa
BcaB01g01010 Brassica carinata
BcaC01g01910 Brassica carinata
BcaC06g35510 Brassica carinata
BcaC07g41930 Brassica carinata
BolC3t19310H Brassica oleracea
BolC7t41903H Brassica oleracea
BolC8t52516H Brassica oleracea
BraA06t25171Z Brassica rapa
BraA07t28703Z Brassica rapa
BraA09t41922Z Brassica rapa
C03p70700 Brassica napus
C07p14060 Brassica napus
C08p49880 Brassica napus
CAN.G1329.3 Capsicum annuum
CAN.G327.13 Capsicum annuum
CANSAT54G0203 Cannabis sativa
CANSAT56G4402 Cannabis sativa
CANSAT78G0504 Cannabis sativa
CARHR008600 Cardamine hirsuta
CARHR155260 Cardamine hirsuta
Carub.0001s0803 Capsella rubella
Carub.0003s2360 Capsella rubella
Carub.0005s1281 Capsella rubella
Ca_01329_v3 Cicer arietinum L.
Ca_09856_v3 Cicer arietinum L.
Ca_19164_v3 Cicer arietinum L.
Cc01_g12790 Coffea canephora
Cc02_g07880 Coffea canephora
CDE04G2274 Ceratophyllum demersum
CDE07G0761 Ceratophyllum demersum
CDE07G0812 Ceratophyllum demersum
Cfa001476 Carpinus fangiana
Cfa011495 Carpinus fangiana
Cfa022942 Carpinus fangiana
Ciclev10006622m.g Citrus clementina
Ciclev10028791m.g Citrus clementina
Ciclev10032416m.g Citrus clementina
CiPaw.01G182700 Carya illinoinensis
CiPaw.01G287200 Carya illinoinensis
CiPaw.13G095100 Carya illinoinensis
CiPaw.14G068800 Carya illinoinensis
ClCG03G001580 Citrullus lanatus
ClCG05G004270 Citrullus lanatus
ClCG06G002860 Citrullus lanatus
COL.COLO4_15037 Corchorus olitorius
COL.COLO4_15892 Corchorus olitorius
COL.COLO4_18505 Corchorus olitorius
Cpa.g.sc1.402 Carica papaya
Cpa.g.sc380.7 Carica papaya
Cpa.g.sc81.157 Carica papaya
CsaV3_1G034100 Cucumis sativus L.
CsaV3_3G011990 Cucumis sativus L.
CsaV3_5G008040 Cucumis sativus L.
CsaV3_6G009020 Cucumis sativus L.
CSS0007664 Camellia sinensis var. sinensis
CSS0016086 Camellia sinensis var. sinensis
CSS0020270 Camellia sinensis var. sinensis
CSS0038796 Camellia sinensis var. sinensis
CSS0049179 Camellia sinensis var. sinensis
DCAR_015623 Daucus carota
DCAR_027324 Daucus carota
DCAR_027632 Daucus carota
Dinv03049 Davidia involucrata
Dinv12417 Davidia involucrata
Dinv16283 Davidia involucrata
Dinv16994 Davidia involucrata
Dinv27063 Davidia involucrata
Dinv29847 Davidia involucrata
Dinv42943 Davidia involucrata
Dinv43157 Davidia involucrata
Duzib114G0820 Durio zibethinus
Duzib128G1425 Durio zibethinus
Duzib150G1147 Durio zibethinus
Duzib151G0587 Durio zibethinus
Duzib168G0866 Durio zibethinus
ECA232G0693 Erigeron canadensis
ECA247G1299 Erigeron canadensis
EL10Ac3g04991 Beta vulgaris
EL10Ac7g16012 Beta vulgaris
Eucgr.B02372 Eucalyptus grandis
Eucgr.H03030 Eucalyptus grandis
Eucgr.J00014 Eucalyptus grandis
FAN01G0784 Fragaria x ananassa
FAN01G2232 Fragaria x ananassa
FAN03G1564 Fragaria x ananassa
FAN06G1235 Fragaria x ananassa
FAN06G1237 Fragaria x ananassa
FAN11G2628 Fragaria x ananassa
FAN12G1370 Fragaria x ananassa
FAN16G0509 Fragaria x ananassa
FAN17G0733 Fragaria x ananassa
FAN21G1346 Fragaria x ananassa
FAN25G1716 Fragaria x ananassa
FvH4_3g35980 Fragaria vesca
FvH4_4g03870 Fragaria vesca
FvH4_7g22420 Fragaria vesca
Glyma.02G091800 Glycine max
Glyma.10G182200 Glycine max
Glyma.11G139600 Glycine max
Glyma.12G063200 Glycine max
Glyma.13G335800 Glycine max
Glyma.15G038500 Glycine max
Glyma.18G291000 Glycine max
Glyma.20G207800 Glycine max
Gohir.A03G041900 Gossypium hirsutum
Gohir.A05G095900 Gossypium hirsutum
Gohir.A06G176900 Gossypium hirsutum
Gohir.A10G110100 Gossypium hirsutum
Gohir.D03G126100 Gossypium hirsutum
Gohir.D06G172900 Gossypium hirsutum
Gohir.D10G155790 Gossypium hirsutum
Gorai.003G132300 Gossypium raimondii
Gorai.009G099500 Gossypium raimondii
Gorai.010G202000 Gossypium raimondii
Gorai.011G175700 Gossypium raimondii
GSVIVG01024977001 Vitis vinifera
GSVIVG01027838001 Vitis vinifera
HanXRQChr02g0049221 Helianthus annuus
HanXRQChr08g0234781 Helianthus annuus
Haze_11400 Corylus avellana
Haze_24089 Corylus avellana
Hma1.2p1_0418F.1_g149050 Hydrangea macrophylla
Hma1.2p1_0493F.1_g164790 Hydrangea macrophylla
HPP92_019107 Vanilla planifolia
Hund04965 Selenicereus undatus
Hund18914 Selenicereus undatus
Lalb_Chr06g0169121 Lupinus albus
Lalb_Chr06g0169131 Lupinus albus
Lalb_Chr19g0137821 Lupinus albus
Lj1A937T95 Lonicera japonica
Lj1C154T2 Lonicera japonica
Lj1g0003843 Lotus japonicus
Lj1g0010796 Lotus japonicus
Lj2C1062G4 Lonicera japonica
Lj3g0000549 Lotus japonicus
Lj3g0002458 Lotus japonicus
Lj5g0013641 Lotus japonicus
Lsat_1_v5_gn_9_23261 Lactuca sativa
Lsat_1_v5_gn_9_65401 Lactuca sativa
Manes.10G030500 Manihot esculenta
Manes.11G131000 Manihot esculenta
Manes.15G042100 Manihot esculenta
MBI05_g22052_MAGBIO Magnolia biondii
MBI07_g31099_MAGBIO Magnolia biondii
MBI14_g37825_MAGBIO Magnolia biondii
MD01G1133800 Malus domestica
MD03G1094900 Malus domestica
MD03G1095100 Malus domestica
MD11G1110100 Malus domestica
MD13G1215900 Malus domestica
Medtr1g075760 Medicago truncatula
Medtr4g063895 Medicago truncatula
MELO3C006413.2 Cucumis melo
MELO3C020644.2 Cucumis melo
MELO3C022241.2 Cucumis melo
MELO3C023851.2 Cucumis melo
Migut.D02106 Erythranthe guttata
Migut.F01509 Erythranthe guttata
Migut.N02674 Erythranthe guttata
MSTRG.21199 Avicennia marina
Nitab4.5_0000065g0030 Nicotiana tabacum
Nitab4.5_0001719g0020 Nicotiana tabacum
Nitab4.5_0001800g0190 Nicotiana tabacum
Nitab4.5_0006994g0070 Nicotiana tabacum
Nn1g02894 Nelumbo nucifera
Nn2g10376 Nelumbo nucifera
Nn3g19704 Nelumbo nucifera
Oeu019201.2 Olea europaea
Oeu064383.1 Olea europaea
Os01g0841000 Oryza sativa ssp. japonica
Os08g0567100 Oryza sativa ssp. japonica
Peaxi162Scf00002g03317 Petunia axillaris
Peaxi162Scf00658g00726 Petunia axillaris
Peaxi162Scf00832g00015 Petunia axillaris
PGR044G1567 Punica granatum
PGR102G1897 Punica granatum
PGSC0003DMG400000393 Solanum tuberosum
PGSC0003DMG400001657 Solanum tuberosum
PGSC0003DMG400040387 Solanum tuberosum
Phvul.008G010900 Phaseolus vulgaris
Phvul.008G147801 Phaseolus vulgaris
Phvul.011G064300 Phaseolus vulgaris
Phvul.L005243 Phaseolus vulgaris
Potri.001G239200 Populus trichocarpa
Potri.008G055600 Populus trichocarpa
Potri.009G030500 Populus trichocarpa
Potri.010G204100 Populus trichocarpa
Pp3c10_1810 Physcomitrium patens
Pp3c12_8680 Physcomitrium patens
Pp3c14_1200 Physcomitrium patens
Pp3c15_15060 Physcomitrium patens
Pp3c1_20720 Physcomitrium patens
Pp3c9_20060 Physcomitrium patens
Prupe.1G041000 Prunus persica
Prupe.2G235100 Prunus persica
Prupe.6G078600 Prunus persica
Psat6g117640 Pisum sativum
Psat7g215880 Pisum sativum
PSO017G2579 Papaver somniferum
PSO063G6312 Papaver somniferum
PSO151G0062 Papaver somniferum
PSO339G3858 Papaver somniferum
QL01p032206 Quercus lobata
QL06p018429 Quercus lobata
QL08p059826 Quercus lobata
RcHm_v2.0_Chr1g0367051 Rosa chinensis
RcHm_v2.0_Chr4g0393891 Rosa chinensis
RcHm_v2.0_Chr5g0064341 Rosa chinensis
Rhsim04G0177300 Rhododendron simsii
Rhsim13G0083100 Rhododendron simsii
Sabra08G0040200 Salix brachista
Sabra09G0021200 Salix brachista
Sabra09G0021300 Salix brachista
Sabra10G0157700 Salix brachista
Sabra16G0144200 Salix brachista
SalBow2G1564 Salvia bowleyana
SalBow2G1593 Salvia bowleyana
SalBow3G3381 Salvia bowleyana
SalBow6G5144 Salvia bowleyana
Sc06g0006230 Simmondsia chinensis
Sc06g0006350 Simmondsia chinensis
Sed0008692 Sechium edule
Sed0010139 Sechium edule
Sed0017366 Sechium edule
SEGI_08008 Sequoiadendron giganteum
SGA_v2.0_scaffold230G43404 Striga asiatica
Solyc01g110500.3 Solanum lycopersicum
Solyc01g110510.3 Solanum lycopersicum
Solyc11g065940.2 Solanum lycopersicum
Sopen01g052630 Solanum pennellii
Sopen01g052640 Solanum pennellii
Sopen11g025680 Solanum pennellii
Sp1g07330 Schrenkiella parvula
Sp3g21020 Schrenkiella parvula
Sp5g15150 Schrenkiella parvula
TAR369G0860 Trochodendron aralioides
TAR623G0177 Trochodendron aralioides
TAR625G0379 Trochodendron aralioides
TAR636G2159 Trochodendron aralioides
TAR636G2637 Trochodendron aralioides
TAR636G3402 Trochodendron aralioides
THA.LOC104810783 Tarenaya hassleriana
THA.LOC104823769 Tarenaya hassleriana
Thecc.04G257600 Theobroma cacao
Thecc.09G322500 Theobroma cacao
Thecc.10G042600 Theobroma cacao
Thhalv10002619m.g Eutrema salsugineum
Thhalv10008666m.g Eutrema salsugineum
Thhalv10022135m.g Eutrema salsugineum
TPR.G10073 Trifolium pratense
TPR.G14481 Trifolium pratense
TWI09G1081 Tripterygium wilfordii
TWI31G1046 Tripterygium wilfordii
unitig_899.g14893 Utricularia gibba
vmacro03076 Vaccinium macrocarpon
vmacro08508 Vaccinium macrocarpon
VMungo0720G1036 Vigna mungo
VMungo1080G1134 Vigna mungo
VMungo1127G0311 Vigna mungo
VMungo1383G1725 Vigna mungo
Zm00001eb038500 Zea mays
Zm00001eb148380 Zea mays
Zm00001eb175580 Zea mays
Zm00001eb367970 Zea mays

User provided reference genes

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