Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p15170 Brassica napus
A06p36280 Brassica napus
A06p36290 Brassica napus
A08p30090 Brassica napus
A09p59590 Brassica napus
Aa31LG11G4680 Aethionema arabicum
Aa31LG4G5020 Aethionema arabicum
Aa31LG7G3650 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.896 Anthoceros agrestis
Actinidia04937 Actinidia chinensis
Actinidia13301 Actinidia chinensis
Actinidia19063 Actinidia chinensis
Actinidia34973 Actinidia chinensis
Actinidia37674 Actinidia chinensis
Ah.02g113090 Amaranthus hybridus
Ah.10g025510 Amaranthus hybridus
AL1G31510 Arabidopsis lyrata
AL6G37410 Arabidopsis lyrata
AL7G50060 Arabidopsis lyrata
Aqoxy3G00824 Aquilegia oxysepala
Aqoxy3G03212 Aquilegia oxysepala
Aqoxy7G01741 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0H89JH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.338XFK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LD21FD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LKD1IW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XR3L42 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YL1JIK Arachis hypogaea
AT1G18950 Arabidopsis thaliana
AT5G25580 Arabidopsis thaliana
ATR0001G021 Amborella trichopoda
ATR0099G095 Amborella trichopoda
ATR1120G126 Amborella trichopoda
Atru.chr7.2306 Acer truncatum
Atru.chr9.2347 Acer truncatum
AUR62008335 Chenopodium quinoa
AUR62021764 Chenopodium quinoa
AUR62024823 Chenopodium quinoa
AUR62032392 Chenopodium quinoa
BcaB03g12945 Brassica carinata
BcaB03g14472 Brassica carinata
BcaB07g31918 Brassica carinata
BcaC05g25005 Brassica carinata
BcaC05g25797 Brassica carinata
BcaC07g38967 Brassica carinata
BcaC07g38968 Brassica carinata
BcaC07g41281 Brassica carinata
BolC5t30436H Brassica oleracea
BolC7t44753H Brassica oleracea
BolC8t49531H Brassica oleracea
BolC8t51843H Brassica oleracea
BraA06t24632Z Brassica rapa
BraA06t26550Z Brassica rapa
BraA08t34944Z Brassica rapa
BraA09t41336Z Brassica rapa
C05p17360 Brassica napus
C07p42260 Brassica napus
C08p19070 Brassica napus
C08p42880 Brassica napus
CAN.G990.1 Capsicum annuum
CAN.G999.18 Capsicum annuum
CANSAT25G3233 Cannabis sativa
CANSAT80G0696 Cannabis sativa
CARHR019580 Cardamine hirsuta
CARHR068100 Cardamine hirsuta
CARHR068110 Cardamine hirsuta
CARHR187790 Cardamine hirsuta
Carub.0001s1858 Capsella rubella
Carub.0006s2345 Capsella rubella
Ca_15686_v3 Cicer arietinum L.
Ca_21863_v3 Cicer arietinum L.
CBR_g48718 Chara braunii
Cc04_g17260 Coffea canephora
Cc08_g08610 Coffea canephora
CDE06G0235 Ceratophyllum demersum
CDE07G1643 Ceratophyllum demersum
Cfa019021 Carpinus fangiana
Ciclev10010486m.g Citrus clementina
Ciclev10019030m.g Citrus clementina
CiPaw.08G017000 Carya illinoinensis
CiPaw.11G035800 Carya illinoinensis
CiPaw.12G019700 Carya illinoinensis
ClCG05G017330 Citrullus lanatus
ClCG06G016510 Citrullus lanatus
COL.COLO4_18715 Corchorus olitorius
COL.COLO4_18717 Corchorus olitorius
COL.COLO4_18752 Corchorus olitorius
COL.COLO4_33406 Corchorus olitorius
COL.COLO4_33407 Corchorus olitorius
Cpa.g.sc17.177 Carica papaya
Cpa.g.sc205.13 Carica papaya
Cpa.g.sc205.15 Carica papaya
Cre01.g013650 Chlamydomonas reinhardtii
CsaV3_1G002000 Cucumis sativus L.
CsaV3_3G046840 Cucumis sativus L.
CSS0007526 Camellia sinensis var. sinensis
CSS0022357 Camellia sinensis var. sinensis
DCAR_006253 Daucus carota
DCAR_016526 Daucus carota
DCAR_026088 Daucus carota
DCAR_031275 Daucus carota
DCAR_031276 Daucus carota
Dinv07980 Davidia involucrata
Dinv19899 Davidia involucrata
Dinv30237 Davidia involucrata
Duzib068G0454 Durio zibethinus
Duzib084G0571 Durio zibethinus
Duzib168G0545 Durio zibethinus
Duzib205G2032 Durio zibethinus
ECA238G4681 Erigeron canadensis
ECA246G1536 Erigeron canadensis
ECA247G2312 Erigeron canadensis
ECA248G2427 Erigeron canadensis
EL10Ac2g02526 Beta vulgaris
EL10Ac5g10903 Beta vulgaris
Eucgr.B00392 Eucalyptus grandis
Eucgr.C01575 Eucalyptus grandis
FAN04G0310 Fragaria x ananassa
FAN08G3282 Fragaria x ananassa
FAN13G2973 Fragaria x ananassa
FAN18G2252 Fragaria x ananassa
FAN24G0549 Fragaria x ananassa
FAN27G2803 Fragaria x ananassa
FvH4_2g30480 Fragaria vesca
FvH4_5g15860 Fragaria vesca
Glyma.03G048000 Glycine max
Glyma.04G073700 Glycine max
Glyma.04G176500 Glycine max
Glyma.05G031300 Glycine max
Glyma.06G074802 Glycine max
Glyma.06G188600 Glycine max
Glyma.17G095633 Glycine max
Gohir.A05G049300 Gossypium hirsutum
Gohir.A12G174800 Gossypium hirsutum
Gohir.D05G051200 Gossypium hirsutum
Gohir.D12G177500 Gossypium hirsutum
Gorai.008G189900 Gossypium raimondii
Gorai.009G052900 Gossypium raimondii
GSVIVG01008087001 Vitis vinifera
GSVIVG01035750001 Vitis vinifera
HanXRQChr04g0103921 Helianthus annuus
HanXRQChr05g0155251 Helianthus annuus
HanXRQChr11g0351601 Helianthus annuus
Haze_05097 Corylus avellana
Haze_07398 Corylus avellana
Haze_21657 Corylus avellana
Hma1.2p1_0002F.1_g003450 Hydrangea macrophylla
HPP92_009605 Vanilla planifolia
HPP92_021797 Vanilla planifolia
Hund02684 Selenicereus undatus
Hund09374 Selenicereus undatus
Hund25651 Selenicereus undatus
Lalb_Chr08g0236041 Lupinus albus
Lalb_Chr11g0064031 Lupinus albus
Lalb_Chr13g0298091 Lupinus albus
Lj1g0000285 Lotus japonicus
Lj1g0008131 Lotus japonicus
Lj4g0017526 Lotus japonicus
Lj5A118T75 Lonicera japonica
Lj7C710T3 Lonicera japonica
Lj9A457T106 Lonicera japonica
Lsat_1_v5_gn_1_11441 Lactuca sativa
Lsat_1_v5_gn_1_49141 Lactuca sativa
Lsat_1_v5_gn_5_18560 Lactuca sativa
Manes.06G097900 Manihot esculenta
Manes.14G073100 Manihot esculenta
Manes.16G069900 Manihot esculenta
Mapoly0007s0175 Marchantia polymorpha
MBI01_g11795_MAGBIO Magnolia biondii
MBI01_g45268_MAGBIO Magnolia biondii
MBI01_g46258_MAGBIO Magnolia biondii
MBI04_g18046_MAGBIO Magnolia biondii
MBI04_g18048_MAGBIO Magnolia biondii
MCO11G673 Micromonas commoda
MD06G1185100 Malus domestica
MD08G1131900 Malus domestica
MD14G1191000 Malus domestica
Medtr3g108410 Medicago truncatula
Medtr4g107390 Medicago truncatula
MELO3C003652.2 Cucumis melo
MELO3C017144.2 Cucumis melo
Migut.A00255 Erythranthe guttata
Migut.D01885 Erythranthe guttata
Migut.I00109 Erythranthe guttata
MSTRG.11717 Avicennia marina
MSTRG.11723 Avicennia marina
MSTRG.23065 Avicennia marina
MSTRG.4398 Avicennia marina
MSTRG.9651 Avicennia marina
Nitab4.5_0000250g0150 Nicotiana tabacum
Nitab4.5_0000642g0060 Nicotiana tabacum
Nitab4.5_0002393g0060 Nicotiana tabacum
Nitab4.5_0005451g0020 Nicotiana tabacum
Nn3g17086 Nelumbo nucifera
Nn4g22995 Nelumbo nucifera
Oeu005674.1 Olea europaea
Oeu005675.1 Olea europaea
Oeu011260.2 Olea europaea
Oeu014504.1 Olea europaea
Oeu020369.1 Olea europaea
Oeu020370.1 Olea europaea
Oeu038111.1 Olea europaea
Oeu039550.1 Olea europaea
Os01g0180700 Oryza sativa ssp. japonica
Os03g0802800 Oryza sativa ssp. japonica
Peaxi162Scf00009g00620 Petunia axillaris
Peaxi162Scf00105g00616 Petunia axillaris
PGR031G1166 Punica granatum
PGR083G1085 Punica granatum
PGSC0003DMG400014490 Solanum tuberosum
PGSC0003DMG400024460 Solanum tuberosum
Phvul.003G194700 Phaseolus vulgaris
Phvul.009G099500 Phaseolus vulgaris
Phvul.009G184000 Phaseolus vulgaris
Potri.006G244800 Populus trichocarpa
Potri.012G072200 Populus trichocarpa
Potri.015G067300 Populus trichocarpa
Potri.018G035700 Populus trichocarpa
Pp3c1_8040 Physcomitrium patens
Pp3c1_8046 Physcomitrium patens
Pp3c2_28330 Physcomitrium patens
Pp3c2_28350 Physcomitrium patens
PRCOL_00006593 Prasinoderma coloniale
PRCOL_00006951 Prasinoderma coloniale
Prupe.1G464000 Prunus persica
Prupe.5G183900 Prunus persica
Psat4g054320 Pisum sativum
Psat5g026320 Pisum sativum
PSO063G6786 Papaver somniferum
PSO161G0042 Papaver somniferum
PSO478G5029 Papaver somniferum
PSO782G3008 Papaver somniferum
QL10p014593 Quercus lobata
QL12p030938 Quercus lobata
RcHm_v2.0_Chr2g0098451 Rosa chinensis
RcHm_v2.0_Chr6g0312561 Rosa chinensis
RcHm_v2.0_Chr7g0180231 Rosa chinensis
Rhsim02G0185000 Rhododendron simsii
Rhsim08G0162300 Rhododendron simsii
Rhsim12G0160100 Rhododendron simsii
Sabra06G0191700 Salix brachista
Sabra12G0051500 Salix brachista
Sabra15G0092000 Salix brachista
Sabra15G0092100 Salix brachista
Sabra18G0036200 Salix brachista
SalBow4G2662 Salvia bowleyana
SalBow7G3812 Salvia bowleyana
Sc04g0002290 Simmondsia chinensis
Sc09g0008930 Simmondsia chinensis
Sed0005992 Sechium edule
Sed0023534 Sechium edule
Sed0027457 Sechium edule
SEGI_06628 Sequoiadendron giganteum
SEGI_16181 Sequoiadendron giganteum
SEGI_17867 Sequoiadendron giganteum
SEGI_27259 Sequoiadendron giganteum
SEGI_33374 Sequoiadendron giganteum
SGA_v2.0_scaffold280G46833 Striga asiatica
SHI07768 Sapria himalayana
SHI07769 Sapria himalayana
SMO115G0311 Selaginella moellendorffii
Solyc03g113500.4 Solanum lycopersicum
Solyc08g068050.3 Solanum lycopersicum
Sopen03g032550 Solanum pennellii
Sopen08g021940 Solanum pennellii
Sp1g16910 Schrenkiella parvula
Sp2g21950 Schrenkiella parvula
Sp5g29910 Schrenkiella parvula
TAR038G0002 Trochodendron aralioides
TAR218G0004 Trochodendron aralioides
TAR371G1049 Trochodendron aralioides
TAR374G1029 Trochodendron aralioides
TAR622G1437 Trochodendron aralioides
TAR626G0990 Trochodendron aralioides
TAR640G0004 Trochodendron aralioides
THA.LOC104808322 Tarenaya hassleriana
THA.LOC104809218 Tarenaya hassleriana
THA.LOC104817114 Tarenaya hassleriana
Thecc.03G075800 Theobroma cacao
Thecc.09G037800 Theobroma cacao
Thhalv10004303m.g Eutrema salsugineum
Thhalv10006851m.g Eutrema salsugineum
Thhalv10026584m.g Eutrema salsugineum
TPR.G12315 Trifolium pratense
TPR.G38385 Trifolium pratense
TWI34G1814 Tripterygium wilfordii
TWI81G0467 Tripterygium wilfordii
unitig_0.g786 Utricularia gibba
unitig_0.g787 Utricularia gibba
unitig_37.g12221 Utricularia gibba
vmacro16574 Vaccinium macrocarpon
VMungo1215G2495 Vigna mungo
VMungo1309G0967 Vigna mungo
VMungo1309G2733 Vigna mungo
Zm00001eb012450 Zea mays
Zm00001eb012460 Zea mays
Zm00001eb061290 Zea mays
Zm00001eb116420 Zea mays
Zm00001eb116430 Zea mays
Zm00001eb122170 Zea mays
Zm00001eb300610 Zea mays
Zm00001eb302670 Zea mays

User provided reference genes

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