Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p19520 Brassica napus
A03p40550 Brassica napus
A03p57750 Brassica napus
A05p31720 Brassica napus
Aa31LG2G22020 Aethionema arabicum
Aa31LG8G4910 Aethionema arabicum
Actinidia09080 Actinidia chinensis
Actinidia12469 Actinidia chinensis
Actinidia27032 Actinidia chinensis
Ah.01g005200 Amaranthus hybridus
Ah.06g193610 Amaranthus hybridus
AL3G31210 Arabidopsis lyrata
AL7G24490 Arabidopsis lyrata
Aqoxy3G00122 Aquilegia oxysepala
Aqoxy6G01329 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5P35FN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9YZ4BU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J24XW6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J8PTSA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JLR4CE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K0QIGJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PA2G9N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SCV28L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T2KYGX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UR15NY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VS3UMP Arachis hypogaea
AT3G18050 Arabidopsis thaliana
AT4G28100 Arabidopsis thaliana
ATR0598G110 Amborella trichopoda
ATR0693G004 Amborella trichopoda
Atru.chr6.3087 Acer truncatum
Atru.chr9.1761 Acer truncatum
AUR62032762 Chenopodium quinoa
AUR62033736 Chenopodium quinoa
AUR62038405 Chenopodium quinoa
AUR62042377 Chenopodium quinoa
BcaB04g18979 Brassica carinata
BcaB06g25875 Brassica carinata
BcaC01g03709 Brassica carinata
BcaC05g28712 Brassica carinata
BcaC09g50513 Brassica carinata
BcaNung01596 Brassica carinata
BolC3t17227H Brassica oleracea
BolC5t33555H Brassica oleracea
BraA01t01889Z Brassica rapa
BraA03t13212Z Brassica rapa
BraA05t22005Z Brassica rapa
C01p24540 Brassica napus
C03p49360 Brassica napus
C05p48140 Brassica napus
CAN.G1129.22 Capsicum annuum
CAN.G1141.3 Capsicum annuum
CAN.G423.21 Capsicum annuum
CANSAT64G1491 Cannabis sativa
CANSAT80G0893 Cannabis sativa
CANSAT80G1338 Cannabis sativa
CARHR093370 Cardamine hirsuta
CARHR235820 Cardamine hirsuta
Carub.0003s1777 Capsella rubella
Carub.0007s1266 Capsella rubella
Ca_14323_v3 Cicer arietinum L.
Ca_16021_v3 Cicer arietinum L.
Ca_17209_v3 Cicer arietinum L.
Ca_17213_v3 Cicer arietinum L.
Cc04_g06540 Coffea canephora
Cc05_g05960 Coffea canephora
CDE01G0436 Ceratophyllum demersum
CDE02G3266 Ceratophyllum demersum
CDE10G0219 Ceratophyllum demersum
Cfa014510 Carpinus fangiana
Ciclev10008811m.g Citrus clementina
Ciclev10015940m.g Citrus clementina
CiPaw.03G167800 Carya illinoinensis
CiPaw.15G140100 Carya illinoinensis
CiPaw.16G091500 Carya illinoinensis
ClCG02G001390 Citrullus lanatus
ClCG02G011470 Citrullus lanatus
ClCG06G014430 Citrullus lanatus
COL.COLO4_33438 Corchorus olitorius
Cpa.g.sc3.419 Carica papaya
Cpa.g.sc34.67 Carica papaya
CsaV3_1G004230 Cucumis sativus L.
CsaV3_5G020470 Cucumis sativus L.
CsaV3_5G020480 Cucumis sativus L.
CsaV3_6G012320 Cucumis sativus L.
CsaV3_7G004060 Cucumis sativus L.
CSS0023604 Camellia sinensis var. sinensis
CSS0035032 Camellia sinensis var. sinensis
CSS0048077 Camellia sinensis var. sinensis
DCAR_006089 Daucus carota
DCAR_014727 Daucus carota
DCAR_015571 Daucus carota
DCAR_021214 Daucus carota
Dinv10190 Davidia involucrata
Dinv10271 Davidia involucrata
Dinv13835 Davidia involucrata
Dinv15505 Davidia involucrata
Duzib052G1246 Durio zibethinus
Duzib068G1395 Durio zibethinus
Duzib132G0791 Durio zibethinus
Duzib205G0513 Durio zibethinus
Duzib248G0544 Durio zibethinus
ECA233G4566 Erigeron canadensis
ECA234G3925 Erigeron canadensis
ECA246G4197 Erigeron canadensis
EL10Ac9g20728 Beta vulgaris
Eucgr.A01771 Eucalyptus grandis
Eucgr.B00868 Eucalyptus grandis
Eucgr.K00897 Eucalyptus grandis
FAN02G0034 Fragaria x ananassa
FAN04G1032 Fragaria x ananassa
FAN08G0638 Fragaria x ananassa
FAN09G3626 Fragaria x ananassa
FAN13G0503 Fragaria x ananassa
FAN14G3125 Fragaria x ananassa
FAN18G0924 Fragaria x ananassa
FvH4_5g17140 Fragaria vesca
FvH4_6g44390 Fragaria vesca
Glyma.05G244200 Glycine max
Glyma.06G299400 Glycine max
Glyma.07G100400 Glycine max
Glyma.08G052100 Glycine max
Glyma.09G178200 Glycine max
Glyma.12G105900 Glycine max
Glyma.12G199500 Glycine max
Gohir.A03G160800 Gossypium hirsutum
Gohir.A09G052100 Gossypium hirsutum
Gohir.A12G136000 Gossypium hirsutum
Gohir.D02G184200 Gossypium hirsutum
Gohir.D09G052900 Gossypium hirsutum
Gohir.D12G140000 Gossypium hirsutum
Gorai.005G206400 Gossypium raimondii
Gorai.008G151300 Gossypium raimondii
Gorai.012G128400 Gossypium raimondii
GSVIVG01000458001 Vitis vinifera
GSVIVG01008405001 Vitis vinifera
HanXRQChr08g0227241 Helianthus annuus
HanXRQChr10g0297041 Helianthus annuus
HanXRQChr17g0541831 Helianthus annuus
Haze_13056 Corylus avellana
Haze_18805 Corylus avellana
Hma1.2p1_0565F.1_g179680 Hydrangea macrophylla
Hma1.2p1_0669F.1_g200250 Hydrangea macrophylla
HPP92_008285 Vanilla planifolia
HPP92_012364 Vanilla planifolia
HPP92_018429 Vanilla planifolia
Hund01221 Selenicereus undatus
Hund02330 Selenicereus undatus
Lalb_Chr03g0029091 Lupinus albus
Lalb_Chr16g0387121 Lupinus albus
Lalb_Chr19g0135541 Lupinus albus
Lj1A737T46 Lonicera japonica
Lj2g0015230 Lotus japonicus
Lj3g0022005 Lotus japonicus
Lj4g0023394 Lotus japonicus
Lj5C155T4 Lonicera japonica
Lsat_1_v5_gn_3_40860 Lactuca sativa
Lsat_1_v5_gn_4_68780 Lactuca sativa
Lsat_1_v5_gn_8_1500 Lactuca sativa
Manes.06G008100 Manihot esculenta
Manes.12G081900 Manihot esculenta
Manes.13G152700 Manihot esculenta
Manes.14G169700 Manihot esculenta
Mapoly0015s0104 Marchantia polymorpha
MBI10_g08555_MAGBIO Magnolia biondii
MD06G1230000 Malus domestica
MD09G1097800 Malus domestica
MD14G1234700 Malus domestica
MD17G1086100 Malus domestica
Medtr0110s0010 Medicago truncatula
Medtr2g047975 Medicago truncatula
Medtr2g089530 Medicago truncatula
Medtr4g051000 Medicago truncatula
Medtr8g106870 Medicago truncatula
MELO3C013552.2 Cucumis melo
MELO3C017348.2 Cucumis melo
MELO3C018774.2 Cucumis melo
Migut.D01572 Erythranthe guttata
Migut.M00359 Erythranthe guttata
MSTRG.14829 Avicennia marina
MSTRG.4563 Avicennia marina
MSTRG.9291 Avicennia marina
Nitab4.5_0000769g0130 Nicotiana tabacum
Nitab4.5_0001019g0010 Nicotiana tabacum
Nitab4.5_0001644g0110 Nicotiana tabacum
Nitab4.5_0001986g0130 Nicotiana tabacum
Nitab4.5_0003221g0020 Nicotiana tabacum
Nitab4.5_0004037g0040 Nicotiana tabacum
Nn1g00781 Nelumbo nucifera
Nn1g06226 Nelumbo nucifera
Nn1g06816 Nelumbo nucifera
Nn3g18230 Nelumbo nucifera
Nn4g24165 Nelumbo nucifera
Nn6g34675 Nelumbo nucifera
Oeu005640.1 Olea europaea
Oeu026301.1 Olea europaea
Oeu029431.1 Olea europaea
Oeu031072.1 Olea europaea
Os02g0710700 Oryza sativa ssp. japonica
Os06g0497500 Oryza sativa ssp. japonica
Os07g0557700 Oryza sativa ssp. japonica
Peaxi162Scf00007g02310 Petunia axillaris
Peaxi162Scf00207g00032 Petunia axillaris
Peaxi162Scf00683g00016 Petunia axillaris
PGR042G3612 Punica granatum
PGR083G1094 Punica granatum
PGR142G2480 Punica granatum
PGSC0003DMG400005442 Solanum tuberosum
PGSC0003DMG400005653 Solanum tuberosum
PGSC0003DMG401028796 Solanum tuberosum
Phvul.002G327800 Phaseolus vulgaris
Phvul.004G151900 Phaseolus vulgaris
Phvul.005G109200 Phaseolus vulgaris
Phvul.011G110300 Phaseolus vulgaris
Potri.012G049000 Populus trichocarpa
Potri.013G148700 Populus trichocarpa
Potri.015G040900 Populus trichocarpa
Potri.019G118300 Populus trichocarpa
Prupe.3G228400 Prunus persica
Prupe.5G231000 Prunus persica
Psat0s1629g0080 Pisum sativum
Psat1g032840 Pisum sativum
Psat5g267800 Pisum sativum
Psat7g003680 Pisum sativum
PSO017G1548 Papaver somniferum
PSO478G1389 Papaver somniferum
PSO541G3471 Papaver somniferum
PSO675G0453 Papaver somniferum
QL08p036720 Quercus lobata
QL10p028045 Quercus lobata
RcHm_v2.0_Chr2g0161331 Rosa chinensis
RcHm_v2.0_Chr2g0161381 Rosa chinensis
RcHm_v2.0_Chr7g0178651 Rosa chinensis
Rhsim04G0062200 Rhododendron simsii
Rhsim04G0062300 Rhododendron simsii
Rhsim06G0153400 Rhododendron simsii
Rhsim08G0175200 Rhododendron simsii
Sabra12G0034400 Salix brachista
Sabra13G0120000 Salix brachista
Sabra15G0056500 Salix brachista
Sabra15G0064400 Salix brachista
Sabra19G0118600 Salix brachista
Sabra19G0119000 Salix brachista
Sabra19G0135000 Salix brachista
SalBow1G7832 Salvia bowleyana
SalBow7G0350 Salvia bowleyana
Sc10g0009300 Simmondsia chinensis
Sc21g0002220 Simmondsia chinensis
Sed0001291 Sechium edule
Sed0006313 Sechium edule
Sed0010253 Sechium edule
Sed0025418 Sechium edule
SEGI_13474 Sequoiadendron giganteum
SEGI_22148 Sequoiadendron giganteum
SEGI_25064 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38495 Striga asiatica
SGA_v2.0_scaffold70G23443 Striga asiatica
SMO334G0049 Selaginella moellendorffii
Solyc03g119110.4 Solanum lycopersicum
Solyc06g069000.3 Solanum lycopersicum
Solyc07g054850.3 Solanum lycopersicum
Sopen03g038000 Solanum pennellii
Sopen06g026290 Solanum pennellii
Sopen07g028760 Solanum pennellii
Sp3g16170 Schrenkiella parvula
Sp7g26060 Schrenkiella parvula
TAR371G0208 Trochodendron aralioides
TAR622G0199 Trochodendron aralioides
TAR626G1588 Trochodendron aralioides
TAR627G0179 Trochodendron aralioides
TAR629G1316 Trochodendron aralioides
TAR629G1332 Trochodendron aralioides
TAR629G3245 Trochodendron aralioides
THA.LOC104814489 Tarenaya hassleriana
THA.LOC104820356 Tarenaya hassleriana
Thecc.02G169200 Theobroma cacao
Thecc.03G052400 Theobroma cacao
Thhalv10021078m.g Eutrema salsugineum
Thhalv10025835m.g Eutrema salsugineum
TPR.G12774 Trifolium pratense
TPR.G18054 Trifolium pratense
TPR.G21655 Trifolium pratense
TWI15G1170 Tripterygium wilfordii
TWI18G1192 Tripterygium wilfordii
TWI36G0718 Tripterygium wilfordii
TWI60G1189 Tripterygium wilfordii
unitig_699.g19062 Utricularia gibba
unitig_699.g19604 Utricularia gibba
unitig_85.g27300 Utricularia gibba
vmacro09296 Vaccinium macrocarpon
vmacro12254 Vaccinium macrocarpon
vmacro17786 Vaccinium macrocarpon
vmacro17787 Vaccinium macrocarpon
VMungo0251G1466 Vigna mungo
VMungo1080G0634 Vigna mungo
VMungo1215G2972 Vigna mungo
Zm00001eb070290 Zea mays
Zm00001eb106750 Zea mays
Zm00001eb188690 Zea mays
Zm00001eb252390 Zea mays
Zm00001eb324000 Zea mays
Zm00001eb382060 Zea mays

User provided reference genes

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