Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02740 Brassica napus
A03p06810 Brassica napus
A03p07430 Brassica napus
A08p12000 Brassica napus
A10p23890 Brassica napus
Aa31LG11G14660 Aethionema arabicum
Aa31LG5G10550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1094 Anthoceros agrestis
Actinidia06030 Actinidia chinensis
Actinidia14300 Actinidia chinensis
Actinidia36077 Actinidia chinensis
Ah.06g192230 Amaranthus hybridus
Ah.13g074640 Amaranthus hybridus
AL6G25590 Arabidopsis lyrata
AL7G39460 Arabidopsis lyrata
Aqoxy2G02975 Aquilegia oxysepala
Aqoxy3G02994 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.44U0MG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A204UU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PTDZ4U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YWKZ8I Arachis hypogaea
AT3G01450 Arabidopsis thaliana
AT3G18530 Arabidopsis thaliana
AT4G15830 Arabidopsis thaliana
AT5G14790 Arabidopsis thaliana
ATR0691G263 Amborella trichopoda
ATR0796G173 Amborella trichopoda
Atru.chr4.2847 Acer truncatum
Atru.chr6.2191 Acer truncatum
AUR62025129 Chenopodium quinoa
AUR62041509 Chenopodium quinoa
AUR62044150 Chenopodium quinoa
BcaB01g05097 Brassica carinata
BcaB04g18334 Brassica carinata
BcaB08g36946 Brassica carinata
BcaC03g13444 Brassica carinata
BcaC04g19008 Brassica carinata
BcaC07g37934 Brassica carinata
BcaNung03093 Brassica carinata
BolC2t06666H Brassica oleracea
BolC3t13280H Brassica oleracea
BolC8t48319H Brassica oleracea
BolC9t59074H Brassica oleracea
BraA02t05245Z Brassica rapa
BraA03t10006Z Brassica rapa
BraA03t10068Z Brassica rapa
BraA03t10069Z Brassica rapa
BraA08t33191Z Brassica rapa
BraA10t44453Z Brassica rapa
C02p07340 Brassica napus
C02p07350 Brassica napus
C03p07810 Brassica napus
CAN.G185.36 Capsicum annuum
CAN.G206.37 Capsicum annuum
CAN.G973.6 Capsicum annuum
CANSAT64G1810 Cannabis sativa
CANSAT78G1150 Cannabis sativa
CARHR075510 Cardamine hirsuta
CARHR198520 Cardamine hirsuta
CARHR290360 Cardamine hirsuta
Carub.0006s1296 Capsella rubella
Carub.0006s1297 Capsella rubella
Carub.0007s2582 Capsella rubella
Ca_01935_v3 Cicer arietinum L.
Ca_04207_v3 Cicer arietinum L.
CBR_g38394 Chara braunii
Cc03_g01860 Coffea canephora
Cc07_g02350 Coffea canephora
CDE02G2316 Ceratophyllum demersum
CDE02G4277 Ceratophyllum demersum
CDE08G0982 Ceratophyllum demersum
CDE10G0008 Ceratophyllum demersum
CDE10G0397 Ceratophyllum demersum
CDE10G1329 Ceratophyllum demersum
Cfa007436 Carpinus fangiana
Cfa015390 Carpinus fangiana
Ciclev10005528m.g Citrus clementina
Ciclev10015930m.g Citrus clementina
CiPaw.02G082700 Carya illinoinensis
CiPaw.03G037000 Carya illinoinensis
CiPaw.04G024100 Carya illinoinensis
ClCG00G005050 Citrullus lanatus
ClCG05G006120 Citrullus lanatus
ClCG10G014340 Citrullus lanatus
COL.COLO4_04776 Corchorus olitorius
COL.COLO4_13865 Corchorus olitorius
Cpa.g.sc16.175 Carica papaya
Cpa.g.sc39.96 Carica papaya
CsaV3_3G014660 Cucumis sativus L.
CsaV3_3G042250 Cucumis sativus L.
CSS0031080 Camellia sinensis var. sinensis
CSS0038505 Camellia sinensis var. sinensis
CSS0047965 Camellia sinensis var. sinensis
DCAR_011211 Daucus carota
DCAR_015039 Daucus carota
DCAR_030528 Daucus carota
Dinv29745 Davidia involucrata
Dinv33503 Davidia involucrata
Dinv35051 Davidia involucrata
Dinv44378 Davidia involucrata
Duzib147G0095 Durio zibethinus
Duzib151G0840 Durio zibethinus
Duzib187G0636 Durio zibethinus
Duzib264G0471 Durio zibethinus
ECA232G0075 Erigeron canadensis
ECA238G0085 Erigeron canadensis
ECA240G2040 Erigeron canadensis
EL10Ac3g06603 Beta vulgaris
Eucgr.H03917 Eucalyptus grandis
Eucgr.J02185 Eucalyptus grandis
FAN02G2066 Fragaria x ananassa
FAN05G2278 Fragaria x ananassa
FAN05G5091 Fragaria x ananassa
FAN09G1649 Fragaria x ananassa
FAN09G2003 Fragaria x ananassa
FAN12G1003 Fragaria x ananassa
FAN12G2556 Fragaria x ananassa
FAN14G0789 Fragaria x ananassa
FAN17G2603 Fragaria x ananassa
FvH4_4g18210 Fragaria vesca
FvH4_6g50550 Fragaria vesca
Glyma.02G247300 Glycine max
Glyma.09G044600 Glycine max
Glyma.14G068900 Glycine max
Glyma.15G148300 Glycine max
Gohir.A02G049500 Gossypium hirsutum
Gohir.A05G360000 Gossypium hirsutum
Gohir.A09G025900 Gossypium hirsutum
Gohir.A09G238700 Gossypium hirsutum
Gohir.D02G054600 Gossypium hirsutum
Gohir.D04G054300 Gossypium hirsutum
Gohir.D05G357540 Gossypium hirsutum
Gohir.D08G126380 Gossypium hirsutum
Gohir.D09G025200 Gossypium hirsutum
Gohir.D09G239600 Gossypium hirsutum
Gohir.D10G083832 Gossypium hirsutum
Gohir.D10G199300 Gossypium hirsutum
Gohir.D11G177600 Gossypium hirsutum
Gorai.005G060500 Gossypium raimondii
Gorai.006G029400 Gossypium raimondii
Gorai.006G262400 Gossypium raimondii
Gorai.009G341400 Gossypium raimondii
Gorai.012G061000 Gossypium raimondii
GSVIVG01007569001 Vitis vinifera
GSVIVG01011950001 Vitis vinifera
GSVIVG01017734001 Vitis vinifera
GSVIVG01020013001 Vitis vinifera
GSVIVG01029947001 Vitis vinifera
GSVIVG01032493001 Vitis vinifera
GSVIVG01032495001 Vitis vinifera
GSVIVG01037347001 Vitis vinifera
GSVIVG01037535001 Vitis vinifera
HanXRQChr02g0037431 Helianthus annuus
HanXRQChr03g0070711 Helianthus annuus
HanXRQChr04g0103891 Helianthus annuus
HanXRQChr08g0220601 Helianthus annuus
HanXRQChr09g0265921 Helianthus annuus
HanXRQChr13g0411211 Helianthus annuus
Haze_01196 Corylus avellana
Haze_14660 Corylus avellana
Hma1.2p1_0187F.1_g082290 Hydrangea macrophylla
Hma1.2p1_0697F.1_g204740 Hydrangea macrophylla
Hma1.2p1_0802F.1_g220480 Hydrangea macrophylla
Hma1.2p1_2562F.1_g324453 Hydrangea macrophylla
HPP92_002960 Vanilla planifolia
HPP92_011846 Vanilla planifolia
Lalb_Chr02g0160011 Lupinus albus
Lalb_Chr02g0160021 Lupinus albus
Lalb_Chr02g0160221 Lupinus albus
Lalb_Chr18g0051681 Lupinus albus
Lalb_Chr21g0319401 Lupinus albus
Lj2g0016496 Lotus japonicus
Lj2P460T20 Lonicera japonica
Lj6A676T60 Lonicera japonica
Lj6g0007957 Lotus japonicus
Lj7A590G64 Lonicera japonica
Lju41A32T64 Lonicera japonica
Lsat_1_v5_gn_2_92300 Lactuca sativa
Lsat_1_v5_gn_4_181460 Lactuca sativa
Lsat_1_v5_gn_5_56820 Lactuca sativa
Manes.03G195700 Manihot esculenta
Manes.17G122500 Manihot esculenta
Mapoly0123s0032 Marchantia polymorpha
MBI14_g41638_MAGBIO Magnolia biondii
MBI19_g12145_MAGBIO Magnolia biondii
MCO01G095 Micromonas commoda
MD08G1066600 Malus domestica
MD09G1035400 Malus domestica
MD13G1168000 Malus domestica
MD16G1168400 Malus domestica
MD17G1035600 Malus domestica
Medtr2g436750 Medicago truncatula
Medtr6g007663 Medicago truncatula
MELO3C006666.2 Cucumis melo
MELO3C009945.2 Cucumis melo
Migut.G00156 Erythranthe guttata
Migut.H00133 Erythranthe guttata
Migut.K01367 Erythranthe guttata
MSTRG.24008 Avicennia marina
MSTRG.3175 Avicennia marina
Nitab4.5_0000059g0450 Nicotiana tabacum
Nitab4.5_0000191g0190 Nicotiana tabacum
Nitab4.5_0001125g0020 Nicotiana tabacum
Nitab4.5_0001709g0050 Nicotiana tabacum
Nitab4.5_0001952g0010 Nicotiana tabacum
Nitab4.5_0007907g0010 Nicotiana tabacum
Nn3g16908 Nelumbo nucifera
Nn4g22814 Nelumbo nucifera
Nn4g25824 Nelumbo nucifera
Oeu029704.1 Olea europaea
Oeu043066.1 Olea europaea
Oeu062912.1 Olea europaea
Oeu062993.1 Olea europaea
Os01g0931200 Oryza sativa ssp. japonica
Os02g0305700 Oryza sativa ssp. japonica
Os08g0534200 Oryza sativa ssp. japonica
Os08g0534900 Oryza sativa ssp. japonica
Peaxi162Scf00129g01032 Petunia axillaris
Peaxi162Scf01123g00223 Petunia axillaris
PGR004G0930 Punica granatum
PGR083G0407 Punica granatum
PGSC0003DMG400000499 Solanum tuberosum
PGSC0003DMG400006294 Solanum tuberosum
PGSC0003DMG400006952 Solanum tuberosum
Phvul.008G233600 Phaseolus vulgaris
Phvul.009G248300 Phaseolus vulgaris
Potri.008G221700 Populus trichocarpa
Potri.008G221900 Populus trichocarpa
Potri.010G014200 Populus trichocarpa
Pp3c11_24870 Physcomitrium patens
Pp3c7_8540 Physcomitrium patens
PRCOL_00003119 Prasinoderma coloniale
Prupe.1G135600 Prunus persica
Prupe.3G283000 Prunus persica
Psat0s6774g0040 Pisum sativum
Psat1g059280 Pisum sativum
Psat1g153960 Pisum sativum
Psat1g158520 Pisum sativum
Psat6g227560 Pisum sativum
PSO017G1373 Papaver somniferum
PSO170G5155 Papaver somniferum
PSO210G2981 Papaver somniferum
PSO478G0846 Papaver somniferum
QL02p076824 Quercus lobata
QL06p008998 Quercus lobata
RcHm_v2.0_Chr2g0168241 Rosa chinensis
RcHm_v2.0_Chr2g0171061 Rosa chinensis
RcHm_v2.0_Chr2g0173731 Rosa chinensis
RcHm_v2.0_Chr4g0422361 Rosa chinensis
RcHm_v2.0_Chr4g0425601 Rosa chinensis
Rhsim02G0008800 Rhododendron simsii
Rhsim10G0023300 Rhododendron simsii
Rhsim10G0023700 Rhododendron simsii
Sabra08G0152700 Salix brachista
Sabra08G0152800 Salix brachista
SalBow2G2737 Salvia bowleyana
SalBow7G1551 Salvia bowleyana
Sc17g0005030 Simmondsia chinensis
Sc19g0005340 Simmondsia chinensis
Sed0000385 Sechium edule
Sed0023368 Sechium edule
Sed0025797 Sechium edule
SEGI_40572 Sequoiadendron giganteum
SEGI_41419 Sequoiadendron giganteum
SGA_v2.0_scaffold147G36296 Striga asiatica
SGA_v2.0_scaffold205G41706 Striga asiatica
SMO289G0002 Selaginella moellendorffii
Solyc01g080750.3 Solanum lycopersicum
Solyc02g067710.3 Solanum lycopersicum
Solyc02g086940.3 Solanum lycopersicum
Sopen01g030770 Solanum pennellii
Sopen02g016830 Solanum pennellii
Sopen02g031710 Solanum pennellii
Sp6g29250 Schrenkiella parvula
Sp7g14230 Schrenkiella parvula
TAR362G0235 Trochodendron aralioides
TAR374G0855 Trochodendron aralioides
TAR622G0168 Trochodendron aralioides
TAR629G0931 Trochodendron aralioides
THA.LOC104798841 Tarenaya hassleriana
THA.LOC104821061 Tarenaya hassleriana
THA.LOC104821778 Tarenaya hassleriana
Thecc.04G007900 Theobroma cacao
Thecc.04G285200 Theobroma cacao
Thhalv10013984m.g Eutrema salsugineum
Thhalv10021113m.g Eutrema salsugineum
Thhalv10022803m.g Eutrema salsugineum
Thhalv10025856m.g Eutrema salsugineum
TPR.G13831 Trifolium pratense
TPR.G2280 Trifolium pratense
TPR.G23007 Trifolium pratense
TPR.G23009 Trifolium pratense
TWI09G1195 Tripterygium wilfordii
TWI12G1240 Tripterygium wilfordii
TWI56G0844 Tripterygium wilfordii
unitig_32.g11873 Utricularia gibba
unitig_37.g12430 Utricularia gibba
unitig_46.g18709 Utricularia gibba
vmacro05814 Vaccinium macrocarpon
vmacro15233 Vaccinium macrocarpon
VMungo0647G2368 Vigna mungo
VMungo1309G2676 Vigna mungo
Zm00001eb175430 Zea mays
Zm00001eb294930 Zea mays
Zm00001eb363590 Zea mays

User provided reference genes

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