Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p26240 Brassica napus
A04p21910 Brassica napus
A07p19310 Brassica napus
Aa31LG10G1340 Aethionema arabicum
Aa31LG5G7360 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3172 Anthoceros agrestis
Actinidia07043 Actinidia chinensis
Actinidia08365 Actinidia chinensis
Actinidia08369 Actinidia chinensis
Actinidia23947 Actinidia chinensis
Actinidia26459 Actinidia chinensis
Actinidia37209 Actinidia chinensis
Ah.08g219400 Amaranthus hybridus
AL4G23380 Arabidopsis lyrata
Aqoxy2G02102 Aquilegia oxysepala
Aqoxy4G02943 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.00N95T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.1XPI57 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B3LXV2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D4PR4R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R129EM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UY0F0V Arachis hypogaea
AT2G28840 Arabidopsis thaliana
ATR0559G082 Amborella trichopoda
Atru.chr3.3889 Acer truncatum
Atru.chr8.1960 Acer truncatum
AUR62001799 Chenopodium quinoa
AUR62009586 Chenopodium quinoa
BcaB01g03124 Brassica carinata
BcaB02g10204 Brassica carinata
BcaB06g28259 Brassica carinata
BcaC01g04992 Brassica carinata
BcaC02g08130 Brassica carinata
BcaC02g11015 Brassica carinata
BolC2t08427H Brassica oleracea
BolC3t15483H Brassica oleracea
BolC4t27331H Brassica oleracea
BraA03t11838Z Brassica rapa
BraA04t17759Z Brassica rapa
BraA07t29636Z Brassica rapa
C02p22740 Brassica napus
C03p31350 Brassica napus
C04p22180 Brassica napus
C04p58050 Brassica napus
CAN.G1313.1 Capsicum annuum
CAN.G327.9 Capsicum annuum
CAN.G394.52 Capsicum annuum
CANSAT35G0595 Cannabis sativa
CANSAT54G2097 Cannabis sativa
CARHR122000 Cardamine hirsuta
Carub.0004s0984 Capsella rubella
Ca_01332_v3 Cicer arietinum L.
Ca_12949_v3 Cicer arietinum L.
Ca_19165_v3 Cicer arietinum L.
CBR_g46652 Chara braunii
Cc01_g12760 Coffea canephora
Cc06_g02730 Coffea canephora
CDE02G0993 Ceratophyllum demersum
CDE08G1515 Ceratophyllum demersum
CDE09G0135 Ceratophyllum demersum
Cfa011490 Carpinus fangiana
Cfa017396 Carpinus fangiana
Ciclev10013390m.g Citrus clementina
Ciclev10028459m.g Citrus clementina
CiPaw.09G191500 Carya illinoinensis
CiPaw.13G095500 Carya illinoinensis
CiPaw.14G069000 Carya illinoinensis
ClCG02G020240 Citrullus lanatus
ClCG04G008260 Citrullus lanatus
ClCG10G021080 Citrullus lanatus
COL.COLO4_14819 Corchorus olitorius
COL.COLO4_18498 Corchorus olitorius
Cpa.g.sc81.163 Carica papaya
Cre11.g467555 Chlamydomonas reinhardtii
CsaV3_3G034950 Cucumis sativus L.
CsaV3_4G024900 Cucumis sativus L.
CsaV3_4G024910 Cucumis sativus L.
CsaV3_6G016940 Cucumis sativus L.
CSS0002118 Camellia sinensis var. sinensis
CSS0006003 Camellia sinensis var. sinensis
CSS0022540 Camellia sinensis var. sinensis
CSS0040606 Camellia sinensis var. sinensis
CSS0044746 Camellia sinensis var. sinensis
CSS0045833 Camellia sinensis var. sinensis
CSS0047443 Camellia sinensis var. sinensis
CSS0047939 Camellia sinensis var. sinensis
DCAR_005322 Daucus carota
DCAR_017870 Daucus carota
DCAR_017871 Daucus carota
DCAR_018906 Daucus carota
Dinv03593 Davidia involucrata
Dinv16989 Davidia involucrata
Dinv35616 Davidia involucrata
Dinv42938 Davidia involucrata
Dinv43162 Davidia involucrata
Duzib150G1148 Durio zibethinus
Duzib168G0439 Durio zibethinus
Duzib170G0079 Durio zibethinus
ECA248G0207 Erigeron canadensis
EL10Ac7g16006 Beta vulgaris
Eucgr.B02375 Eucalyptus grandis
FAN02G0666 Fragaria x ananassa
FAN05G3723 Fragaria x ananassa
FAN09G1431 Fragaria x ananassa
FAN09G3418 Fragaria x ananassa
FAN11G2566 Fragaria x ananassa
FAN14G2043 Fragaria x ananassa
FAN16G2439 Fragaria x ananassa
FAN21G0241 Fragaria x ananassa
FAN25G0473 Fragaria x ananassa
FvH4_3g35930 Fragaria vesca
FvH4_6g13990 Fragaria vesca
Glyma.08G315500 Glycine max
Glyma.08G358300 Glycine max
Glyma.11G140000 Glycine max
Glyma.12G063600 Glycine max
Glyma.13G335300 Glycine max
Glyma.15G039100 Glycine max
Glyma.18G176600 Glycine max
Gohir.A03G041700 Gossypium hirsutum
Gohir.A04G057826 Gossypium hirsutum
Gohir.A05G096100 Gossypium hirsutum
Gohir.A06G141533 Gossypium hirsutum
Gohir.A07G097900 Gossypium hirsutum
Gohir.A09G156800 Gossypium hirsutum
Gohir.A13G010300 Gossypium hirsutum
Gohir.D03G126400 Gossypium hirsutum
Gohir.D05G096300 Gossypium hirsutum
Gohir.D07G102200 Gossypium hirsutum
Gohir.D09G152100 Gossypium hirsutum
Gorai.001G110100 Gossypium raimondii
Gorai.003G132700 Gossypium raimondii
Gorai.006G173500 Gossypium raimondii
Gorai.009G099800 Gossypium raimondii
GSVIVG01010470001 Vitis vinifera
GSVIVG01024983001 Vitis vinifera
GSVIVG01034187001 Vitis vinifera
HanXRQChr03g0063671 Helianthus annuus
HanXRQChr04g0105711 Helianthus annuus
HanXRQChr09g0241501 Helianthus annuus
HanXRQChr11g0328691 Helianthus annuus
HanXRQChr12g0379601 Helianthus annuus
HanXRQChr14g0445631 Helianthus annuus
Haze_20769 Corylus avellana
Haze_24083 Corylus avellana
Hma1.2p1_0012F.1_g007270 Hydrangea macrophylla
Hma1.2p1_0012F.1_g007280 Hydrangea macrophylla
Hma1.2p1_0418F.1_g149010 Hydrangea macrophylla
Hma1.2p1_1080F.1_g255063 Hydrangea macrophylla
Hma1.2p1_1080F.1_g255066 Hydrangea macrophylla
Hma1.2p1_1513F.1_g288080 Hydrangea macrophylla
HPP92_000802 Vanilla planifolia
HPP92_000803 Vanilla planifolia
HPP92_012591 Vanilla planifolia
HPP92_019827 Vanilla planifolia
Hund04969 Selenicereus undatus
Hund18917 Selenicereus undatus
Lalb_Chr01g0003701 Lupinus albus
Lalb_Chr03g0026671 Lupinus albus
Lalb_Chr07g0193931 Lupinus albus
Lalb_Chr14g0375081 Lupinus albus
Lalb_Chr22g0349951 Lupinus albus
Lj1A155T26 Lonicera japonica
Lj2C1061T2 Lonicera japonica
Lj3g0007505 Lotus japonicus
Lj3g0008401 Lotus japonicus
Lj3g0012658 Lotus japonicus
Lsat_1_v5_gn_8_75941 Lactuca sativa
Lsat_1_v5_gn_9_23160 Lactuca sativa
Manes.04G034200 Manihot esculenta
Manes.11G131400 Manihot esculenta
Mapoly0074s0071 Marchantia polymorpha
MBI05_g30237_MAGBIO Magnolia biondii
MBI14_g31253_MAGBIO Magnolia biondii
MCO11G631 Micromonas commoda
MD03G1096100 Malus domestica
MD04G1126800 Malus domestica
MD11G1110600 Malus domestica
MD12G1078200 Malus domestica
Medtr2g096760 Medicago truncatula
Medtr4g021880 Medicago truncatula
Medtr4g063830 Medicago truncatula
MELO3C003123.2 Cucumis melo
MELO3C009263.2 Cucumis melo
MELO3C025925.2 Cucumis melo
Migut.J00337 Erythranthe guttata
Migut.N02672 Erythranthe guttata
MSTRG.12646 Avicennia marina
MSTRG.17835 Avicennia marina
MSTRG.5671 Avicennia marina
Nitab4.5_0000761g0080 Nicotiana tabacum
Nitab4.5_0001304g0080 Nicotiana tabacum
Nitab4.5_0001800g0160 Nicotiana tabacum
Nitab4.5_0005575g0010 Nicotiana tabacum
Nitab4.5_0009064g0010 Nicotiana tabacum
Nitab4.5_0019790g0010 Nicotiana tabacum
Nn1g01255 Nelumbo nucifera
Nn1g08740 Nelumbo nucifera
Nn2g10384 Nelumbo nucifera
Nn5g26929 Nelumbo nucifera
Oeu011401.1 Olea europaea
Oeu019203.1 Olea europaea
Oeu042968.1 Olea europaea
Oeu049235.1 Olea europaea
Oeu054153.1 Olea europaea
Oeu054154.1 Olea europaea
Os01g0974400 Oryza sativa ssp. japonica
Os03g0275300 Oryza sativa ssp. japonica
Os05g0112000 Oryza sativa ssp. japonica
Peaxi162Scf00165g01517 Petunia axillaris
Peaxi162Scf00679g00318 Petunia axillaris
Peaxi162Scf00832g10019 Petunia axillaris
PGR004G2646 Punica granatum
PGR102G1238 Punica granatum
PGR119G0058 Punica granatum
PGSC0003DMG400000440 Solanum tuberosum
PGSC0003DMG400008913 Solanum tuberosum
PGSC0003DMG400030318 Solanum tuberosum
Phvul.008G099700 Phaseolus vulgaris
Phvul.011G064600 Phaseolus vulgaris
Phvul.L004743 Phaseolus vulgaris
Potri.001G238800 Populus trichocarpa
Potri.009G030000 Populus trichocarpa
PRCOL_00000539 Prasinoderma coloniale
PRCOL_00003153 Prasinoderma coloniale
Prupe.6G079100 Prunus persica
Prupe.6G253500 Prunus persica
Psat5g283520 Pisum sativum
Psat5g283560 Pisum sativum
Psat7g216840 Pisum sativum
Psat7g236800 Pisum sativum
PSO151G0002 Papaver somniferum
PSO339G0262 Papaver somniferum
PSO339G4363 Papaver somniferum
PSO384G3898 Papaver somniferum
QL01p032312 Quercus lobata
QL07p048113 Quercus lobata
RcHm_v2.0_Chr1g0313891 Rosa chinensis
RcHm_v2.0_Chr1g0314361 Rosa chinensis
RcHm_v2.0_Chr1g0357421 Rosa chinensis
RcHm_v2.0_Chr2g0133681 Rosa chinensis
RcHm_v2.0_Chr3g0466811 Rosa chinensis
RcHm_v2.0_Chr3g0487431 Rosa chinensis
RcHm_v2.0_Chr5g0035641 Rosa chinensis
RcHm_v2.0_Chr5g0038661 Rosa chinensis
RcHm_v2.0_Chr5g0051561 Rosa chinensis
RcHm_v2.0_Chr5g0064211 Rosa chinensis
Rhsim05G0191400 Rhododendron simsii
Rhsim13G0083500 Rhododendron simsii
Sabra09G0020900 Salix brachista
SalBow2G0673 Salvia bowleyana
SalBow3G2753 Salvia bowleyana
Sc12g0001560 Simmondsia chinensis
Sc20g0004690 Simmondsia chinensis
Sc21g0005720 Simmondsia chinensis
Sed0006322 Sechium edule
Sed0015510 Sechium edule
Sed0023584 Sechium edule
Sed0026540 Sechium edule
SEGI_03379 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33794 Striga asiatica
SGA_v2.0_scaffold61G21285 Striga asiatica
SGA_v2.0_scaffold75G24941 Striga asiatica
SMO137G0170 Selaginella moellendorffii
SMO200G0028 Selaginella moellendorffii
SMO347G0115 Selaginella moellendorffii
Solyc06g076050.4 Solanum lycopersicum
Solyc09g010690.4 Solanum lycopersicum
Solyc11g066020.2 Solanum lycopersicum
Sopen06g032460 Solanum pennellii
Sopen09g005400 Solanum pennellii
Sopen11g025760 Solanum pennellii
Sp4g11670 Schrenkiella parvula
TAR623G0612 Trochodendron aralioides
TAR633G1196 Trochodendron aralioides
TAR636G1065 Trochodendron aralioides
THA.LOC104800654 Tarenaya hassleriana
THA.LOC104826332 Tarenaya hassleriana
Thecc.05G041000 Theobroma cacao
Thecc.09G323000 Theobroma cacao
Thhalv10016642m.g Eutrema salsugineum
TPR.G14473 Trifolium pratense
TPR.G34298 Trifolium pratense
TPR.G5604 Trifolium pratense
TWI31G0099 Tripterygium wilfordii
TWI75G0616 Tripterygium wilfordii
TWI79G0126 Tripterygium wilfordii
unitig_22.g5646 Utricularia gibba
unitig_26.g9197 Utricularia gibba
unitig_6.g29266 Utricularia gibba
unitig_60.g25689 Utricularia gibba
unitig_747.g21429 Utricularia gibba
vmacro03079 Vaccinium macrocarpon
vmacro20142 Vaccinium macrocarpon
VMungo1080G1292 Vigna mungo
VMungo1127G1464 Vigna mungo
VMungo1215G1305 Vigna mungo
VMungo1383G1781 Vigna mungo
Zm00001eb009020 Zea mays
Zm00001eb012360 Zea mays
Zm00001eb139740 Zea mays
Zm00001eb266800 Zea mays
Zm00001eb355740 Zea mays
Zm00001eb383610 Zea mays
Zm00001eb397670 Zea mays
Zm00001eb426480 Zea mays

User provided reference genes

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