Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01800 Brassica napus
A08p31250 Brassica napus
A10p31430 Brassica napus
Aa31LG11G5580 Aethionema arabicum
Aa31LG7G1310 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1799 Anthoceros agrestis
Actinidia06694 Actinidia chinensis
Actinidia08924 Actinidia chinensis
Actinidia18602 Actinidia chinensis
Actinidia36854 Actinidia chinensis
Ah.04g160210 Amaranthus hybridus
AL1G29050 Arabidopsis lyrata
AL6G14400 Arabidopsis lyrata
Aqoxy4G02788 Aquilegia oxysepala
Aqoxy7G03010 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0M1DUZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4V2TIF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.65I9ND Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6LUC20 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DML457 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HF2CBI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I7QGG2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N0KYQA Arachis hypogaea
AT1G16880 Arabidopsis thaliana
AT5G04740 Arabidopsis thaliana
ATR0081G050 Amborella trichopoda
ATR0580G114 Amborella trichopoda
ATR0787G133 Amborella trichopoda
Atru.chr1.2757 Acer truncatum
Atru.chr12.1015 Acer truncatum
AUR62033055 Chenopodium quinoa
AUR62040785 Chenopodium quinoa
AUR62042077 Chenopodium quinoa
AUR62043604 Chenopodium quinoa
BcaB01g05902 Brassica carinata
BcaB02g06668 Brassica carinata
BcaB03g13028 Brassica carinata
BcaB05g21749 Brassica carinata
BcaB05g21750 Brassica carinata
BcaB06g28349 Brassica carinata
BcaC03g13121 Brassica carinata
BcaC05g25544 Brassica carinata
BcaC05g25545 Brassica carinata
BcaC06g32181 Brassica carinata
BcaC07g38820 Brassica carinata
BcaNung05849 Brassica carinata
BolC2t06161H Brassica oleracea
BolC3t12769H Brassica oleracea
BolC5t30225H Brassica oleracea
BolC7t41753H Brassica oleracea
BolC8t49384H Brassica oleracea
BolC9t59955H Brassica oleracea
BraA02t04822Z Brassica rapa
BraA03t09552Z Brassica rapa
BraA06t24439Z Brassica rapa
BraA08t35048Z Brassica rapa
BraA10t45189Z Brassica rapa
C02p02020 Brassica napus
C03p02180 Brassica napus
C05p15100 Brassica napus
C08p17590 Brassica napus
C09p72110 Brassica napus
CAN.G1008.27 Capsicum annuum
CAN.G1089.6 Capsicum annuum
CAN.G645.8 Capsicum annuum
CANSAT56G2706 Cannabis sativa
CANSAT64G1127 Cannabis sativa
CARHR017350 Cardamine hirsuta
CARHR208550 Cardamine hirsuta
Carub.0001s1662 Capsella rubella
Carub.0006s0363 Capsella rubella
Ca_01016_v3 Cicer arietinum L.
Ca_20541_v3 Cicer arietinum L.
Ca_25667_v3 Cicer arietinum L.
Ca_27799_v3 Cicer arietinum L.
CBR_g48396 Chara braunii
Cc00_g34830 Coffea canephora
Cc04_g05520 Coffea canephora
CDE02G1320 Ceratophyllum demersum
CDE02G4507 Ceratophyllum demersum
CDE04G0376 Ceratophyllum demersum
CDE04G3667 Ceratophyllum demersum
Cfa010420 Carpinus fangiana
Cfa011273 Carpinus fangiana
Ciclev10003167m.g Citrus clementina
Ciclev10016113m.g Citrus clementina
Ciclev10027515m.g Citrus clementina
CiPaw.13G039200 Carya illinoinensis
CiPaw.13G048800 Carya illinoinensis
CiPaw.14G033000 Carya illinoinensis
CiPaw.14G038600 Carya illinoinensis
ClCG08G008230 Citrullus lanatus
ClCG10G012780 Citrullus lanatus
COL.COLO4_26829 Corchorus olitorius
COL.COLO4_31907 Corchorus olitorius
Cpa.g.sc1007.1 Carica papaya
Cpa.g.sc5.267 Carica papaya
Cpa.g.sc67.24 Carica papaya
Cre01.g061077 Chlamydomonas reinhardtii
CsaV3_3G032620 Cucumis sativus L.
CsaV3_6G004180 Cucumis sativus L.
CSS0007482 Camellia sinensis var. sinensis
CSS0039944 Camellia sinensis var. sinensis
CSS0042973 Camellia sinensis var. sinensis
CSS0045687 Camellia sinensis var. sinensis
DCAR_015654 Daucus carota
DCAR_021386 Daucus carota
DCAR_025618 Daucus carota
Dinv09610 Davidia involucrata
Dinv11843 Davidia involucrata
Dinv13689 Davidia involucrata
Dinv23252 Davidia involucrata
Duzib128G1362 Durio zibethinus
Duzib192G0244 Durio zibethinus
Duzib235G1509 Durio zibethinus
ECA232G3505 Erigeron canadensis
ECA232G4076 Erigeron canadensis
EL10Ac2g03708 Beta vulgaris
EL10Ac4g08680 Beta vulgaris
EL10Ac8g19457 Beta vulgaris
Eucgr.J00982 Eucalyptus grandis
Eucgr.J03143 Eucalyptus grandis
FAN01G1136 Fragaria x ananassa
FAN02G0689 Fragaria x ananassa
FAN03G1680 Fragaria x ananassa
FAN05G0617 Fragaria x ananassa
FAN06G0087 Fragaria x ananassa
FAN09G4429 Fragaria x ananassa
FAN14G3767 Fragaria x ananassa
FvH4_1g30540 Fragaria vesca
FvH4_6g27920 Fragaria vesca
FvH4_7g05550 Fragaria vesca
Glyma.07G022700 Glycine max
Glyma.08G219100 Glycine max
Glyma.10G279300 Glycine max
Glyma.13G370200 Glycine max
Glyma.15G003200 Glycine max
Glyma.20G110400 Glycine max
Gohir.A05G175200 Gossypium hirsutum
Gohir.A06G154600 Gossypium hirsutum
Gohir.A13G010000 Gossypium hirsutum
Gohir.D05G178200 Gossypium hirsutum
Gohir.D06G161300 Gossypium hirsutum
Gohir.D13G010900 Gossypium hirsutum
Gorai.009G183700 Gossypium raimondii
Gorai.010G188200 Gossypium raimondii
Gorai.013G011700 Gossypium raimondii
GSVIVG01001004001 Vitis vinifera
GSVIVG01016110001 Vitis vinifera
HanXRQChr05g0147961 Helianthus annuus
HanXRQChr05g0157561 Helianthus annuus
HanXRQChr09g0274321 Helianthus annuus
Haze_02509 Corylus avellana
Haze_03370 Corylus avellana
Hma1.2p1_0338F.1_g129560 Hydrangea macrophylla
Hma1.2p1_1596F.1_g292800 Hydrangea macrophylla
HPP92_013809 Vanilla planifolia
HPP92_020055 Vanilla planifolia
Hund06779 Selenicereus undatus
Hund22377 Selenicereus undatus
Lalb_Chr00c36g0408801 Lupinus albus
Lalb_Chr00c36g0408811 Lupinus albus
Lalb_Chr00c36g0408961 Lupinus albus
Lalb_Chr00c36g0408971 Lupinus albus
Lalb_Chr06g0166421 Lupinus albus
Lalb_Chr21g0309211 Lupinus albus
Lalb_Chr24g0392891 Lupinus albus
Lj3C927G2 Lonicera japonica
Lj3g0017755 Lotus japonicus
Lj3g0018096 Lotus japonicus
Lj5A84T52 Lonicera japonica
Lj5g0015476 Lotus japonicus
Lsat_1_v5_gn_0_7781 Lactuca sativa
Lsat_1_v5_gn_1_38961 Lactuca sativa
Lsat_1_v5_gn_4_85200 Lactuca sativa
Lsat_1_v5_gn_5_9221 Lactuca sativa
Manes.03G081800 Manihot esculenta
Manes.10G061400 Manihot esculenta
Manes.16G048000 Manihot esculenta
Mapoly0046s0069 Marchantia polymorpha
MBI01_g16480_MAGBIO Magnolia biondii
MBI01_g16481_MAGBIO Magnolia biondii
MBI10_g35395_MAGBIO Magnolia biondii
MBI14_g17380_MAGBIO Magnolia biondii
MBI14_g17386_MAGBIO Magnolia biondii
MBI15_g33466_MAGBIO Magnolia biondii
MBI16_g31786_MAGBIO Magnolia biondii
MCO09G020 Micromonas commoda
MD07G1063700 Malus domestica
MD09G1231700 Malus domestica
MD17G1229500 Malus domestica
Medtr1g112170 Medicago truncatula
Medtr2g105090 Medicago truncatula
Medtr4g007140 Medicago truncatula
MELO3C018137.2 Cucumis melo
MELO3C019893.2 Cucumis melo
MELO3C024887.2 Cucumis melo
Migut.F00881 Erythranthe guttata
Migut.I00646 Erythranthe guttata
MSTRG.11210 Avicennia marina
MSTRG.22828 Avicennia marina
MSTRG.27576 Avicennia marina
Nitab4.5_0000976g0290 Nicotiana tabacum
Nitab4.5_0001437g0030 Nicotiana tabacum
Nitab4.5_0004890g0020 Nicotiana tabacum
Nitab4.5_0005336g0010 Nicotiana tabacum
Nitab4.5_0007669g0020 Nicotiana tabacum
Nitab4.5_0011538g0010 Nicotiana tabacum
Nitab4.5_0011538g0020 Nicotiana tabacum
Nn2g14145 Nelumbo nucifera
Nn6g34919 Nelumbo nucifera
Nn8g40455 Nelumbo nucifera
Oeu026588.1 Olea europaea
Oeu033444.1 Olea europaea
Oeu061604.2 Olea europaea
Os08g0242700 Oryza sativa ssp. japonica
Os12g0152700 Oryza sativa ssp. japonica
Peaxi162Scf00173g00323 Petunia axillaris
Peaxi162Scf00207g00258 Petunia axillaris
Peaxi162Scf00314g00827 Petunia axillaris
PGR031G0031 Punica granatum
PGR142G3839 Punica granatum
PGSC0003DMG400014224 Solanum tuberosum
PGSC0003DMG400028931 Solanum tuberosum
PGSC0003DMG401023974 Solanum tuberosum
Phvul.005G181700 Phaseolus vulgaris
Phvul.007G022000 Phaseolus vulgaris
Phvul.010G161600 Phaseolus vulgaris
Potri.008G010400 Populus trichocarpa
Potri.008G020700 Populus trichocarpa
Potri.010G238300 Populus trichocarpa
Potri.010G248700 Populus trichocarpa
Pp3c15_10370 Physcomitrium patens
Pp3c9_8920 Physcomitrium patens
PRCOL_00002694 Prasinoderma coloniale
Prupe.2G077000 Prunus persica
Prupe.3G107700 Prunus persica
Psat5g308080 Pisum sativum
Psat6g230760 Pisum sativum
Psat7g262840 Pisum sativum
PSO063G4716 Papaver somniferum
PSO170G4373 Papaver somniferum
PSO339G0127 Papaver somniferum
PSO384G0633 Papaver somniferum
QL05p081598 Quercus lobata
RcHm_v2.0_Chr1g0332391 Rosa chinensis
RcHm_v2.0_Chr2g0131481 Rosa chinensis
Rhsim03G0098400 Rhododendron simsii
Rhsim09G0142300 Rhododendron simsii
Rhsim12G0182800 Rhododendron simsii
Sabra08G0006200 Salix brachista
Sabra08G0013900 Salix brachista
Sabra10G0186600 Salix brachista
Sabra10G0193800 Salix brachista
SalBow6G1665 Salvia bowleyana
SalBow7G4051 Salvia bowleyana
Sc06g0002360 Simmondsia chinensis
Sc10g0008560 Simmondsia chinensis
Sed0005899 Sechium edule
Sed0011767 Sechium edule
Sed0018200 Sechium edule
Sed0023206 Sechium edule
SEGI_04357 Sequoiadendron giganteum
SEGI_39322 Sequoiadendron giganteum
SGA_v2.0_scaffold5G02823 Striga asiatica
SGA_v2.0_scaffold62G21337 Striga asiatica
SMO134G0153 Selaginella moellendorffii
SMO143G0274 Selaginella moellendorffii
Solyc03g117890.3 Solanum lycopersicum
Solyc06g068670.3 Solanum lycopersicum
Solyc11g006970.2 Solanum lycopersicum
Sopen03g036800 Solanum pennellii
Sopen06g025950 Solanum pennellii
Sopen11g002890 Solanum pennellii
Sp1g15020 Schrenkiella parvula
Sp6g38080 Schrenkiella parvula
TAR383G0722 Trochodendron aralioides
TAR633G0325 Trochodendron aralioides
TAR636G2121 Trochodendron aralioides
THA.LOC104808099 Tarenaya hassleriana
THA.LOC104816463 Tarenaya hassleriana
Thecc.06G235500 Theobroma cacao
Thecc.10G113600 Theobroma cacao
Thhalv10008354m.g Eutrema salsugineum
Thhalv10014331m.g Eutrema salsugineum
TPR.G14806 Trifolium pratense
TPR.G19161 Trifolium pratense
TPR.G192 Trifolium pratense
TPR.G23083 Trifolium pratense
TPR.G2412 Trifolium pratense
TWI15G1250 Tripterygium wilfordii
TWI38G0574 Tripterygium wilfordii
TWI75G0395 Tripterygium wilfordii
TWI79G0362 Tripterygium wilfordii
unitig_61.g26218 Utricularia gibba
vmacro10306 Vaccinium macrocarpon
VMungo0331G0418 Vigna mungo
VMungo0720G3003 Vigna mungo
VMungo1080G0097 Vigna mungo
Zm00001eb118650 Zea mays
Zm00001eb164170 Zea mays
Zm00001eb191120 Zea mays
Zm00001eb223200 Zea mays
Zm00001eb318960 Zea mays
Zm00001eb406760 Zea mays
Zm00001eb419230 Zea mays

User provided reference genes

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