Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p43440 Brassica napus
A06p44740 Brassica napus
A10p08500 Brassica napus
Aa31LG10G9960 Aethionema arabicum
Aa31sc170G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.287 Anthoceros agrestis
Actinidia02280 Actinidia chinensis
Actinidia19359 Actinidia chinensis
Ah.02g110830 Amaranthus hybridus
Ah.09g233810 Amaranthus hybridus
Ah.14g087360 Amaranthus hybridus
AL1G12900 Arabidopsis lyrata
AL8G24180 Arabidopsis lyrata
Aqoxy1G01861 Aquilegia oxysepala
Aqoxy1G04285 Aquilegia oxysepala
Aqoxy5G03761 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.82G0WN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W30BWE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W61NZ6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X8CB50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YMBY6G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZDME2F Arachis hypogaea
AT1G03370 Arabidopsis thaliana
AT5G50170 Arabidopsis thaliana
ATR0561G202 Amborella trichopoda
ATR0751G212 Amborella trichopoda
ATR0824G218 Amborella trichopoda
Atru.chr1.2168 Acer truncatum
Atru.chr9.2569 Acer truncatum
Atru.chr9.2570 Acer truncatum
Atru.chr9.2571 Acer truncatum
AUR62008149 Chenopodium quinoa
AUR62015189 Chenopodium quinoa
AUR62021802 Chenopodium quinoa
AUR62028731 Chenopodium quinoa
BcaB08g35383 Brassica carinata
BcaC04g20817 Brassica carinata
BcaC06g31342 Brassica carinata
BcaC06g31343 Brassica carinata
BcaC06g34225 Brassica carinata
BolC1t05332H Brassica oleracea
BolC7t43690H Brassica oleracea
BolC9t56742H Brassica oleracea
BraA05t23084Z Brassica rapa
BraA06t27346Z Brassica rapa
BraSC37t46155Z Brassica rapa
C07p31470 Brassica napus
C09p38810 Brassica napus
CAN.G1456.3 Capsicum annuum
CAN.G338.28 Capsicum annuum
CANSAT56G2534 Cannabis sativa
CANSAT80G2112 Cannabis sativa
CARHR002750 Cardamine hirsuta
CARHR258460 Cardamine hirsuta
Carub.0001s0250 Capsella rubella
Carub.0008s1017 Capsella rubella
Ca_00773_v3 Cicer arietinum L.
Ca_16133_v3 Cicer arietinum L.
Ca_20985_v3 Cicer arietinum L.
CBR_g12029 Chara braunii
CBR_g18909 Chara braunii
Cc00_g07140 Coffea canephora
Cc04_g11630 Coffea canephora
Cc09_g00210 Coffea canephora
CDE10G0873 Ceratophyllum demersum
CDE10G1230 Ceratophyllum demersum
Cfa019210 Carpinus fangiana
Ciclev10014339m.g Citrus clementina
Ciclev10018657m.g Citrus clementina
CiPaw.09G110500 Carya illinoinensis
CiPaw.10G083200 Carya illinoinensis
CiPaw.10G083300 Carya illinoinensis
CiPaw.11G020800 Carya illinoinensis
ClCG01G011470 Citrullus lanatus
ClCG01G013470 Citrullus lanatus
COL.COLO4_05560 Corchorus olitorius
COL.COLO4_31951 Corchorus olitorius
Cpa.g.sc159.32 Carica papaya
Cpa.g.sc27.208 Carica papaya
Cpa.g.sc27.209 Carica papaya
CsaV3_1G008820 Cucumis sativus L.
CsaV3_1G015310 Cucumis sativus L.
CSS0002988 Camellia sinensis var. sinensis
CSS0004526 Camellia sinensis var. sinensis
CSS0024123 Camellia sinensis var. sinensis
DCAR_002247 Daucus carota
DCAR_016456 Daucus carota
DCAR_022847 Daucus carota
DCAR_030829 Daucus carota
Dinv01307 Davidia involucrata
Dinv04391 Davidia involucrata
Dinv07144 Davidia involucrata
Dinv38531 Davidia involucrata
Duzib235G0599 Durio zibethinus
ECA246G1629 Erigeron canadensis
ECA248G1869 Erigeron canadensis
EL10Ac5g10660 Beta vulgaris
EL10Ac8g20276 Beta vulgaris
Eucgr.B00225 Eucalyptus grandis
Eucgr.E03833 Eucalyptus grandis
Eucgr.L01991 Eucalyptus grandis
Eucgr.L01993 Eucalyptus grandis
FAN04G2694 Fragaria x ananassa
FAN08G3540 Fragaria x ananassa
FAN18G2293 Fragaria x ananassa
FAN21G2978 Fragaria x ananassa
FAN25G3164 Fragaria x ananassa
FvH4_3g00230 Fragaria vesca
FvH4_5g06260 Fragaria vesca
Glyma.04G187900 Glycine max
Glyma.06G177800 Glycine max
Glyma.07G269000 Glycine max
Glyma.09G015700 Glycine max
Glyma.09G182700 Glycine max
Glyma.15G121500 Glycine max
Glyma.17G004700 Glycine max
Gohir.A06G157200 Gossypium hirsutum
Gohir.A06G203200 Gossypium hirsutum
Gohir.A12G199500 Gossypium hirsutum
Gohir.D06G163400 Gossypium hirsutum
Gohir.D06G218500 Gossypium hirsutum
Gohir.D12G202300 Gossypium hirsutum
Gorai.007G246000 Gossypium raimondii
Gorai.008G217300 Gossypium raimondii
Gorai.010G190600 Gossypium raimondii
Gorai.010G247800 Gossypium raimondii
GSVIVG01003476001 Vitis vinifera
GSVIVG01007656001 Vitis vinifera
HanXRQChr01g0005711 Helianthus annuus
HanXRQChr05g0153281 Helianthus annuus
HanXRQChr05g0153631 Helianthus annuus
Haze_07042 Corylus avellana
Haze_07581 Corylus avellana
Hma1.2p1_0048F.1_g028080 Hydrangea macrophylla
Hma1.2p1_0048F.1_g028090 Hydrangea macrophylla
Hma1.2p1_2912F.1_g330260 Hydrangea macrophylla
HPP92_022818 Vanilla planifolia
HPP92_027040 Vanilla planifolia
HPP92_027041 Vanilla planifolia
Hund02783 Selenicereus undatus
Hund21143 Selenicereus undatus
Lalb_Chr07g0176891 Lupinus albus
Lalb_Chr08g0236721 Lupinus albus
Lalb_Chr08g0236731 Lupinus albus
Lalb_Chr15g0088321 Lupinus albus
Lalb_Chr20g0119611 Lupinus albus
Lj1A1248G41 Lonicera japonica
Lj1A1248T46 Lonicera japonica
Lj1g0002807 Lotus japonicus
Lj2A256G92 Lonicera japonica
Lj4g0016540 Lotus japonicus
Lj6g0020580 Lotus japonicus
Lj9A442T66 Lonicera japonica
Lj9C442T16 Lonicera japonica
Lsat_1_v5_gn_1_130320 Lactuca sativa
Lsat_1_v5_gn_3_112061 Lactuca sativa
Lsat_1_v5_gn_5_14340 Lactuca sativa
Manes.06G109800 Manihot esculenta
Manes.08G074500 Manihot esculenta
Manes.09G084400 Manihot esculenta
Mapoly0114s0023 Marchantia polymorpha
MBI04_g11123_MAGBIO Magnolia biondii
MBI04_g22057_MAGBIO Magnolia biondii
MBI11_g05794_MAGBIO Magnolia biondii
MBI14_g14415_MAGBIO Magnolia biondii
MBI14_g37013_MAGBIO Magnolia biondii
MBI14_g37014_MAGBIO Magnolia biondii
MBI19_g11839_MAGBIO Magnolia biondii
MD05G1362700 Malus domestica
MD06G1166100 Malus domestica
MD10G1340200 Malus domestica
Medtr2g027360 Medicago truncatula
Medtr3g077000 Medicago truncatula
Medtr4g134190 Medicago truncatula
MELO3C002296.2 Cucumis melo
MELO3C026088.2 Cucumis melo
Migut.M01458 Erythranthe guttata
Migut.O00153 Erythranthe guttata
MSTRG.14587 Avicennia marina
MSTRG.16062 Avicennia marina
MSTRG.7117 Avicennia marina
Nitab4.5_0000147g0200 Nicotiana tabacum
Nitab4.5_0001793g0140 Nicotiana tabacum
Nitab4.5_0003703g0060 Nicotiana tabacum
Nitab4.5_0010199g0030 Nicotiana tabacum
Nn1g07573 Nelumbo nucifera
Nn1g07746 Nelumbo nucifera
Nn3g16704 Nelumbo nucifera
Oeu025975.1 Olea europaea
Oeu031383.2 Olea europaea
Oeu040856.2 Olea europaea
Oeu057010.1 Olea europaea
Os02g0199800 Oryza sativa ssp. japonica
Os04g0476600 Oryza sativa ssp. japonica
Os06g0297800 Oryza sativa ssp. japonica
Os06g0607900 Oryza sativa ssp. japonica
Os08g0492400 Oryza sativa ssp. japonica
Peaxi162Scf00073g00236 Petunia axillaris
Peaxi162Scf00073g02328 Petunia axillaris
Peaxi162Scf00073g10235 Petunia axillaris
Peaxi162Scf00089g01338 Petunia axillaris
Peaxi162Scf00661g00045 Petunia axillaris
Peaxi162Scf00661g00416 Petunia axillaris
Peaxi162Scf00661g00420 Petunia axillaris
Peaxi162Scf00811g00440 Petunia axillaris
Peaxi162Scf01370g00002 Petunia axillaris
Peaxi162Scf01370g00024 Petunia axillaris
PGR083G1498 Punica granatum
PGSC0003DMG400018116 Solanum tuberosum
PGSC0003DMG400019744 Solanum tuberosum
Phvul.003G088200 Phaseolus vulgaris
Phvul.006G136200 Phaseolus vulgaris
Phvul.007G128400 Phaseolus vulgaris
Phvul.009G174400 Phaseolus vulgaris
Phvul.L001679 Phaseolus vulgaris
Potri.006G003200 Populus trichocarpa
Potri.015G083500 Populus trichocarpa
Potri.016G003900 Populus trichocarpa
Pp3c10_15570 Physcomitrium patens
Pp3c10_20210 Physcomitrium patens
Pp3c17_4360 Physcomitrium patens
Pp3c3_25560 Physcomitrium patens
Pp3c4_12050 Physcomitrium patens
Prupe.4G002600 Prunus persica
Prupe.5G166000 Prunus persica
Psat0s3170g0160 Pisum sativum
Psat0s4085g0080 Pisum sativum
Psat1g173200 Pisum sativum
PSO063G3683 Papaver somniferum
PSO170G0140 Papaver somniferum
PSO210G2930 Papaver somniferum
PSO210G6881 Papaver somniferum
PSO541G4796 Papaver somniferum
PSO675G0122 Papaver somniferum
QL05p066708 Quercus lobata
QL10p006929 Quercus lobata
QL10p006949 Quercus lobata
RcHm_v2.0_Chr5g0000311 Rosa chinensis
RcHm_v2.0_Chr7g0192601 Rosa chinensis
Rhsim11G0055300 Rhododendron simsii
Rhsim13G0138900 Rhododendron simsii
Rhsim13G0190100 Rhododendron simsii
Rhsim13G0190200 Rhododendron simsii
Sabra06G0003000 Salix brachista
Sabra15G0106900 Salix brachista
Sabra16G0008900 Salix brachista
SalBow1G2521 Salvia bowleyana
SalBow1G6146 Salvia bowleyana
SalBow5G3004 Salvia bowleyana
SalBow5G3653 Salvia bowleyana
SalBow8G0118 Salvia bowleyana
SalBow8G0580 Salvia bowleyana
Sc12g0005030 Simmondsia chinensis
Sc12g0005040 Simmondsia chinensis
Sc17g0006270 Simmondsia chinensis
Sed0000102 Sechium edule
Sed0015166 Sechium edule
SEGI_03008 Sequoiadendron giganteum
SEGI_18563 Sequoiadendron giganteum
SEGI_19523 Sequoiadendron giganteum
SEGI_22498 Sequoiadendron giganteum
SGA_v2.0_scaffold7G03677 Striga asiatica
SGA_v2.0_scaffold90G27844 Striga asiatica
SMO228G0082 Selaginella moellendorffii
Solyc03g112280.3 Solanum lycopersicum
Solyc04g015160.3 Solanum lycopersicum
Sopen03g031380 Solanum pennellii
Sopen04g007200 Solanum pennellii
Sp2g12480 Schrenkiella parvula
Sp6g12150 Schrenkiella parvula
TAR371G0325 Trochodendron aralioides
TAR376G0383 Trochodendron aralioides
TAR624G0290 Trochodendron aralioides
TAR627G0742 Trochodendron aralioides
TAR629G2496 Trochodendron aralioides
TAR629G2784 Trochodendron aralioides
THA.LOC104809244 Tarenaya hassleriana
THA.LOC104809772 Tarenaya hassleriana
THA.LOC104815471 Tarenaya hassleriana
Thecc.03G025000 Theobroma cacao
Thecc.06G242400 Theobroma cacao
Thhalv10000756m.g Eutrema salsugineum
Thhalv10012548m.g Eutrema salsugineum
TPR.G1523 Trifolium pratense
TPR.G17551 Trifolium pratense
TPR.G18922 Trifolium pratense
TPR.G6009 Trifolium pratense
TWI38G2118 Tripterygium wilfordii
TWI39G1056 Tripterygium wilfordii
unitig_26.g9407 Utricularia gibba
unitig_61.g26473 Utricularia gibba
unitig_748.g7860 Utricularia gibba
vmacro02361 Vaccinium macrocarpon
vmacro03595 Vaccinium macrocarpon
vmacro19304 Vaccinium macrocarpon
VMungo0540G0748 Vigna mungo
VMungo1215G3116 Vigna mungo
VMungo1309G0070 Vigna mungo
Zm00001eb033780 Zea mays
Zm00001eb079710 Zea mays
Zm00001eb079720 Zea mays
Zm00001eb123530 Zea mays
Zm00001eb198500 Zea mays
Zm00001eb207510 Zea mays
Zm00001eb235890 Zea mays
Zm00001eb281080 Zea mays
Zm00001eb380960 Zea mays
Zm00001eb386570 Zea mays

User provided reference genes

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