Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p10110 Brassica napus
A03p19060 Brassica napus
A04p26240 Brassica napus
A07p10720 Brassica napus
A08p13500 Brassica napus
A08p25100 Brassica napus
A09p36950 Brassica napus
Aa31LG6G850 Aethionema arabicum
Aa31LG9G6470 Aethionema arabicum
Actinidia00160 Actinidia chinensis
Actinidia07673 Actinidia chinensis
Actinidia16740 Actinidia chinensis
Actinidia19494 Actinidia chinensis
Actinidia39552 Actinidia chinensis
Actinidia39553 Actinidia chinensis
Ah.14g086630 Amaranthus hybridus
AL1G43160 Arabidopsis lyrata
AL4G30200 Arabidopsis lyrata
AL7G36280 Arabidopsis lyrata
AL8G12030 Arabidopsis lyrata
AL8G12040 Arabidopsis lyrata
Aqoxy1G01826 Aquilegia oxysepala
Aqoxy3G00259 Aquilegia oxysepala
Aqoxy4G00134 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.10QHSJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2P40EC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GR8GZB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HDGT4K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NSCH3W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U1JW6M Arachis hypogaea
AT1G29350 Arabidopsis thaliana
AT1G29370 Arabidopsis thaliana
AT4G18150 Arabidopsis thaliana
AT5G46380 Arabidopsis thaliana
ATR0568G071 Amborella trichopoda
Atru.chr10.1374 Acer truncatum
Atru.chr10.1375 Acer truncatum
Atru.chr10.1376 Acer truncatum
Atru.chr6.2083 Acer truncatum
AUR62027569 Chenopodium quinoa
AUR62035790 Chenopodium quinoa
BcaB01g01254 Brassica carinata
BcaB01g03898 Brassica carinata
BcaB03g12157 Brassica carinata
BcaB03g13890 Brassica carinata
BcaB04g18457 Brassica carinata
BcaB06g28744 Brassica carinata
BcaB07g32529 Brassica carinata
BcaC01g00102 Brassica carinata
BcaC01g00103 Brassica carinata
BcaC01g01594 Brassica carinata
BcaC01g05802 Brassica carinata
BcaC05g26962 Brassica carinata
BcaC06g35426 Brassica carinata
BcaC07g38118 Brassica carinata
BcaC09g51551 Brassica carinata
BcaNung00029 Brassica carinata
BolC3t14609H Brassica oleracea
BolC3t19685H Brassica oleracea
BolC3t19839H Brassica oleracea
BolC4t27832H Brassica oleracea
BolC5t31541H Brassica oleracea
BolC7t42125H Brassica oleracea
BolC8t48540H Brassica oleracea
BraA01t00957Z Brassica rapa
BraA03t11164Z Brassica rapa
BraA04t18129Z Brassica rapa
BraA07t28867Z Brassica rapa
BraA08t33327Z Brassica rapa
BraA08t33331Z Brassica rapa
BraA08t33335Z Brassica rapa
BraA08t34465Z Brassica rapa
BraA08t34466Z Brassica rapa
BraA09t39213Z Brassica rapa
C01p11940 Brassica napus
C03p22250 Brassica napus
C03p74260 Brassica napus
C03p75800 Brassica napus
C03p75810 Brassica napus
C04p63630 Brassica napus
C05p28140 Brassica napus
C07p16320 Brassica napus
CAN.G234.14 Capsicum annuum
CAN.G257.41 Capsicum annuum
CAN.G638.33 Capsicum annuum
CANSAT35G1880 Cannabis sativa
CANSAT64G0533 Cannabis sativa
CARHR028700 Cardamine hirsuta
CARHR175390 Cardamine hirsuta
CARHR224890 Cardamine hirsuta
CARHR224900 Cardamine hirsuta
Carub.0001s2757 Capsella rubella
Carub.0007s2320 Capsella rubella
Carub.0008s0151 Capsella rubella
Carub.0008s0153 Capsella rubella
Ca_11356_v3 Cicer arietinum L.
Ca_12077_v3 Cicer arietinum L.
Ca_12231_v3 Cicer arietinum L.
Ca_17861_v3 Cicer arietinum L.
CBR_g34670 Chara braunii
Cc09_g09600 Coffea canephora
CDE02G1231 Ceratophyllum demersum
CDE09G0885 Ceratophyllum demersum
CDE09G1362 Ceratophyllum demersum
Cfa001003 Carpinus fangiana
Ciclev10014224m.g Citrus clementina
Ciclev10033869m.g Citrus clementina
CiPaw.09G127200 Carya illinoinensis
ClCG01G024300 Citrullus lanatus
COL.COLO4_08450 Corchorus olitorius
COL.COLO4_22782 Corchorus olitorius
Cpa.g.sc17.147 Carica papaya
Cpa.g.sc17.148 Carica papaya
Cpa.g.sc50.91 Carica papaya
CsaV3_6G051440 Cucumis sativus L.
CSS0000438 Camellia sinensis var. sinensis
CSS0022798 Camellia sinensis var. sinensis
DCAR_003951 Daucus carota
DCAR_007907 Daucus carota
Dinv12975 Davidia involucrata
Dinv12976 Davidia involucrata
Dinv30691 Davidia involucrata
Dinv32294 Davidia involucrata
Duzib147G0756 Durio zibethinus
Duzib160G0835 Durio zibethinus
Duzib187G1433 Durio zibethinus
Duzib192G0797 Durio zibethinus
Duzib235G0129 Durio zibethinus
ECA234G1061 Erigeron canadensis
ECA236G0285 Erigeron canadensis
EL10Ac8g19782 Beta vulgaris
Eucgr.E02361 Eucalyptus grandis
FAN02G0622 Fragaria x ananassa
FAN05G1322 Fragaria x ananassa
FAN09G4743 Fragaria x ananassa
FAN11G2865 Fragaria x ananassa
FAN14G5224 Fragaria x ananassa
FAN16G2391 Fragaria x ananassa
FAN21G1774 Fragaria x ananassa
FAN25G2793 Fragaria x ananassa
FvH4_3g06300 Fragaria vesca
FvH4_6g38300 Fragaria vesca
Glyma.05G165300 Glycine max
Glyma.08G122700 Glycine max
Glyma.08G309000 Glycine max
Glyma.09G019700 Glycine max
Glyma.15G126000 Glycine max
Glyma.18G107400 Glycine max
Gohir.A05G150800 Gossypium hirsutum
Gohir.A05G379400 Gossypium hirsutum
Gohir.A10G038100 Gossypium hirsutum
Gohir.D04G036000 Gossypium hirsutum
Gohir.D05G153200 Gossypium hirsutum
Gohir.D10G039100 Gossypium hirsutum
Gorai.009G157400 Gossypium raimondii
Gorai.011G041100 Gossypium raimondii
Gorai.012G040900 Gossypium raimondii
GSVIVG01014401001 Vitis vinifera
GSVIVG01021389001 Vitis vinifera
HanXRQChr04g0118541 Helianthus annuus
HanXRQChr15g0480051 Helianthus annuus
HanXRQChr16g0525811 Helianthus annuus
HanXRQChr17g0561151 Helianthus annuus
Haze_05504 Corylus avellana
Haze_05510 Corylus avellana
Haze_13508 Corylus avellana
Hma1.2p1_0015F.1_g010310 Hydrangea macrophylla
Hma1.2p1_0164F.1_g073220 Hydrangea macrophylla
HPP92_021327 Vanilla planifolia
HPP92_021328 Vanilla planifolia
HPP92_021338 Vanilla planifolia
Hund17841 Selenicereus undatus
Hund21489 Selenicereus undatus
Lalb_Chr07g0186041 Lupinus albus
Lalb_Chr12g0204721 Lupinus albus
Lalb_Chr13g0295481 Lupinus albus
Lalb_Chr15g0080511 Lupinus albus
Lj1C1182G9 Lonicera japonica
Lj2A311T58 Lonicera japonica
Lj2A311T59 Lonicera japonica
Lj4g0017124 Lotus japonicus
Lj6g0012792 Lotus japonicus
Lsat_1_v5_gn_4_29741 Lactuca sativa
Lsat_1_v5_gn_7_30801 Lactuca sativa
Manes.01G130100 Manihot esculenta
Manes.02G087801 Manihot esculenta
Manes.15G117700 Manihot esculenta
Manes.17G065500 Manihot esculenta
MBI07_g07825_MAGBIO Magnolia biondii
MBI07_g07826_MAGBIO Magnolia biondii
MBI07_g35044_MAGBIO Magnolia biondii
MBI10_g36377_MAGBIO Magnolia biondii
MD05G1291000 Malus domestica
MD09G1151000 Malus domestica
MD10G1266800 Malus domestica
MD17G1138600 Malus domestica
Medtr3g048270 Medicago truncatula
Medtr8g088190 Medicago truncatula
MELO3C007162.2 Cucumis melo
Migut.H01383 Erythranthe guttata
Migut.M00951 Erythranthe guttata
Migut.M00952 Erythranthe guttata
MSTRG.14759 Avicennia marina
MSTRG.16205 Avicennia marina
MSTRG.7461 Avicennia marina
MSTRG.7462 Avicennia marina
Nitab4.5_0000592g0340 Nicotiana tabacum
Nitab4.5_0002210g0080 Nicotiana tabacum
Nitab4.5_0008782g0010 Nicotiana tabacum
Nitab4.5_0010964g0050 Nicotiana tabacum
Nn3g20871 Nelumbo nucifera
Nn4g26478 Nelumbo nucifera
Oeu040952.1 Olea europaea
Oeu052390.1 Olea europaea
Os01g0663800 Oryza sativa ssp. japonica
Os05g0566900 Oryza sativa ssp. japonica
Os05g0581800 Oryza sativa ssp. japonica
Peaxi162Scf00242g00913 Petunia axillaris
Peaxi162Scf00482g00026 Petunia axillaris
PGR042G2511 Punica granatum
PGR142G0597 Punica granatum
PGSC0003DMG400003082 Solanum tuberosum
Phvul.002G245500 Phaseolus vulgaris
Phvul.006G032700 Phaseolus vulgaris
Phvul.006G132200 Phaseolus vulgaris
Phvul.011G058700 Phaseolus vulgaris
Potri.001G353100 Populus trichocarpa
Potri.002G059300 Populus trichocarpa
Potri.005G202851 Populus trichocarpa
Potri.011G078800 Populus trichocarpa
Prupe.3G173800 Prunus persica
Prupe.4G074600 Prunus persica
Psat1g093680 Pisum sativum
Psat3g039480 Pisum sativum
Psat3g073360 Pisum sativum
Psat5g185080 Pisum sativum
Psat5g185120 Pisum sativum
Psat7g065760 Pisum sativum
PSO384G3575 Papaver somniferum
PSO541G0453 Papaver somniferum
PSO675G1127 Papaver somniferum
QL05p060265 Quercus lobata
RcHm_v2.0_Chr2g0151631 Rosa chinensis
RcHm_v2.0_Chr5g0013011 Rosa chinensis
Rhsim02G0154100 Rhododendron simsii
Rhsim02G0154300 Rhododendron simsii
RhsimUnG0162600 Rhododendron simsii
Sabra11G0073100 Salix brachista
Sabra11G0078500 Salix brachista
Sabra16G0232400 Salix brachista
SalBow7G2249 Salvia bowleyana
Sc05g0006550 Simmondsia chinensis
Sc17g0005160 Simmondsia chinensis
Sed0001712 Sechium edule
Sed0010382 Sechium edule
SGA_v2.0_scaffold106G30620 Striga asiatica
SGA_v2.0_scaffold333G49016 Striga asiatica
SGA_v2.0_scaffold51G18621 Striga asiatica
Solyc02g071180.3 Solanum lycopersicum
Solyc03g005750.3 Solanum lycopersicum
Solyc09g018250.2 Solanum lycopersicum
Sopen02g020260 Solanum pennellii
Sopen03g001760 Solanum pennellii
Sp1g25300 Schrenkiella parvula
Sp1g25310 Schrenkiella parvula
Sp7g15970 Schrenkiella parvula
SpUn0746_0010 Schrenkiella parvula
SpUn1257_0010 Schrenkiella parvula
TAR624G0733 Trochodendron aralioides
TAR626G0889 Trochodendron aralioides
TAR627G0800 Trochodendron aralioides
THA.LOC104812645 Tarenaya hassleriana
THA.LOC104813342 Tarenaya hassleriana
THA.LOC104814266 Tarenaya hassleriana
THA.LOC104820614 Tarenaya hassleriana
THA.LOC104827729 Tarenaya hassleriana
Thecc.01G162900 Theobroma cacao
Thecc.06G156900 Theobroma cacao
Thhalv10006794m.g Eutrema salsugineum
Thhalv10016218m.g Eutrema salsugineum
Thhalv10027504m.g Eutrema salsugineum
Thhalv10027613m.g Eutrema salsugineum
Thhalv10028089m.g Eutrema salsugineum
Thhalv10028301m.g Eutrema salsugineum
TPR.G16783 Trifolium pratense
TPR.G6807 Trifolium pratense
TWI09G0510 Tripterygium wilfordii
TWI53G0176 Tripterygium wilfordii
TWI59G1388 Tripterygium wilfordii
TWI73G0577 Tripterygium wilfordii
unitig_26.g10092 Utricularia gibba
unitig_32.g11432 Utricularia gibba
unitig_748.g7645 Utricularia gibba
VMungo0251G0782 Vigna mungo
VMungo0540G0102 Vigna mungo
VMungo0540G0251 Vigna mungo
VMungo0540G0893 Vigna mungo
Zm00001eb093020 Zea mays
Zm00001eb157580 Zea mays
Zm00001eb242520 Zea mays
Zm00001eb248320 Zea mays
Zm00001eb267150 Zea mays
Zm00001eb267980 Zea mays
Zm00001eb296100 Zea mays
Zm00001eb297070 Zea mays
Zm00001eb343930 Zea mays
Zm00001eb344700 Zea mays
Zm00001eb359640 Zea mays

User provided reference genes

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