Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p23630 Brassica napus
A05p02920 Brassica napus
A07p23890 Brassica napus
A09p50900 Brassica napus
Aa31LG10G12830 Aethionema arabicum
Aa31LG1G24250 Aethionema arabicum
Actinidia10984 Actinidia chinensis
Actinidia11125 Actinidia chinensis
Ah.01g003880 Amaranthus hybridus
Ah.04g164430 Amaranthus hybridus
AL4G40800 Arabidopsis lyrata
AL5G39810 Arabidopsis lyrata
Aqoxy1G02211 Aquilegia oxysepala
Aqoxy4G00537 Aquilegia oxysepala
Aqoxy4G02716 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0BLG9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.71DGVH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F95VPU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HW01DK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V67U6Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZES6QF Arachis hypogaea
AT2G42380 Arabidopsis thaliana
AT3G58120 Arabidopsis thaliana
ATR0602G153 Amborella trichopoda
ATR0818G001 Amborella trichopoda
Atru.chr2.2340 Acer truncatum
Atru.chr6.2838 Acer truncatum
Atru.chr8.2294 Acer truncatum
AUR62019518 Chenopodium quinoa
AUR62024071 Chenopodium quinoa
AUR62036121 Chenopodium quinoa
AUR62038993 Chenopodium quinoa
BcaB01g03446 Brassica carinata
BcaB02g07549 Brassica carinata
BcaC01g05287 Brassica carinata
BcaC01g05291 Brassica carinata
BcaC01g05302 Brassica carinata
BcaC02g09989 Brassica carinata
BcaC02g12484 Brassica carinata
BcaC07g40182 Brassica carinata
BcaC07g40184 Brassica carinata
BcaC07g40326 Brassica carinata
BcaC08g44898 Brassica carinata
BolC3t15188H Brassica oleracea
BolC4t21990H Brassica oleracea
BolC4t24988H Brassica oleracea
BolC4t24989H Brassica oleracea
BolC6t37671H Brassica oleracea
BolC8t50961H Brassica oleracea
BraA03t11579Z Brassica rapa
BraA05t19283Z Brassica rapa
BraA07t30042Z Brassica rapa
BraA09t40536Z Brassica rapa
C03p28180 Brassica napus
C04p03550 Brassica napus
C04p34280 Brassica napus
C04p34290 Brassica napus
C06p25130 Brassica napus
C08p33640 Brassica napus
CAN.G1543.10 Capsicum annuum
CAN.G162.26 Capsicum annuum
CAN.G318.5 Capsicum annuum
CANSAT35G0937 Cannabis sativa
CANSAT64G0015 Cannabis sativa
CARHR137430 Cardamine hirsuta
CARHR168470 Cardamine hirsuta
Carub.0004s2477 Capsella rubella
Carub.0005s2497 Capsella rubella
Ca_04024_v3 Cicer arietinum L.
Ca_18901_v3 Cicer arietinum L.
Cc05_g08000 Coffea canephora
Cc05_g11490 Coffea canephora
CDE02G3937 Ceratophyllum demersum
CDE03G0342 Ceratophyllum demersum
CDE04G1176 Ceratophyllum demersum
CDE04G2153 Ceratophyllum demersum
CDE04G3314 Ceratophyllum demersum
CDE05G0649 Ceratophyllum demersum
CDE09G0039 Ceratophyllum demersum
Cfa014691 Carpinus fangiana
Cfa019613 Carpinus fangiana
Ciclev10008720m.g Citrus clementina
Ciclev10015966m.g Citrus clementina
CiPaw.03G184100 Carya illinoinensis
CiPaw.11G165200 Carya illinoinensis
CiPaw.12G115600 Carya illinoinensis
ClCG00G001870 Citrullus lanatus
ClCG02G002210 Citrullus lanatus
ClCG11G017700 Citrullus lanatus
COL.COLO4_14489 Corchorus olitorius
Cpa.g.sc131.79 Carica papaya
Cpa.g.sc209.8 Carica papaya
Cre17.g746547 Chlamydomonas reinhardtii
CsaV3_2G034600 Cucumis sativus L.
CsaV3_4G033330 Cucumis sativus L.
CsaV3_7G003290 Cucumis sativus L.
CSS0009595 Camellia sinensis var. sinensis
CSS0020026 Camellia sinensis var. sinensis
CSS0048197 Camellia sinensis var. sinensis
DCAR_009765 Daucus carota
DCAR_021009 Daucus carota
DCAR_021277 Daucus carota
Dinv03892 Davidia involucrata
Dinv14958 Davidia involucrata
Dinv19980 Davidia involucrata
Dinv20223 Davidia involucrata
Duzib093G2186 Durio zibethinus
Duzib147G1659 Durio zibethinus
Duzib170G0027 Durio zibethinus
Duzib213G0791 Durio zibethinus
Duzib268G0924 Durio zibethinus
ECA236G4642 Erigeron canadensis
ECA240G3701 Erigeron canadensis
EL10Ac4g08299 Beta vulgaris
EL10Ac9g20854 Beta vulgaris
Eucgr.F03286 Eucalyptus grandis
Eucgr.K01085 Eucalyptus grandis
FAN02G0891 Fragaria x ananassa
FAN05G0650 Fragaria x ananassa
FAN09G3141 Fragaria x ananassa
FAN11G3061 Fragaria x ananassa
FAN14G4401 Fragaria x ananassa
FAN16G0639 Fragaria x ananassa
FAN21G0777 Fragaria x ananassa
FAN21G2999 Fragaria x ananassa
FAN25G1327 Fragaria x ananassa
FvH4_6g26970 Fragaria vesca
Glyma.06G284900 Glycine max
Glyma.12G121000 Glycine max
Glyma.12G208400 Glycine max
Glyma.12G227700 Glycine max
Glyma.13G272500 Glycine max
Glyma.13G292800 Glycine max
Gohir.A01G059300 Gossypium hirsutum
Gohir.A01G228700 Gossypium hirsutum
Gohir.A11G286800 Gossypium hirsutum
Gohir.A13G148000 Gossypium hirsutum
Gohir.D01G045300 Gossypium hirsutum
Gohir.D01G218600 Gossypium hirsutum
Gohir.D11G306300 Gossypium hirsutum
Gohir.D13G152600 Gossypium hirsutum
Gorai.002G064900 Gossypium raimondii
Gorai.002G265300 Gossypium raimondii
Gorai.007G325700 Gossypium raimondii
Gorai.013G172500 Gossypium raimondii
GSVIVG01014246001 Vitis vinifera
GSVIVG01020658001 Vitis vinifera
HanXRQChr03g0070551 Helianthus annuus
HanXRQChr03g0071001 Helianthus annuus
HanXRQChr13g0391241 Helianthus annuus
HanXRQChr17g0560471 Helianthus annuus
Haze_09367 Corylus avellana
Haze_13308 Corylus avellana
Hma1.2p1_0002F.1_g002520 Hydrangea macrophylla
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla
HPP92_005197 Vanilla planifolia
HPP92_020291 Vanilla planifolia
HPP92_024329 Vanilla planifolia
Hund02242 Selenicereus undatus
Lalb_Chr01g0005911 Lupinus albus
Lalb_Chr03g0029801 Lupinus albus
Lalb_Chr03g0030941 Lupinus albus
Lalb_Chr14g0367281 Lupinus albus
Lalb_Chr19g0135001 Lupinus albus
Lalb_Chr20g0109421 Lupinus albus
Lalb_Chr24g0400011 Lupinus albus
Lalb_Chr25g0286131 Lupinus albus
Lj1C835T8 Lonicera japonica
Lj3g0018486 Lotus japonicus
Lj3g0019556 Lotus japonicus
Lj3g0023616 Lotus japonicus
Lj8A105T40 Lonicera japonica
Lj8A152T85 Lonicera japonica
Lsat_1_v5_gn_7_102900 Lactuca sativa
Lsat_1_v5_gn_7_102940 Lactuca sativa
Lsat_1_v5_gn_8_137641 Lactuca sativa
Lsat_1_v5_gn_9_99081 Lactuca sativa
Manes.03G103800 Manihot esculenta
Manes.12G091500 Manihot esculenta
Manes.13G139500 Manihot esculenta
Manes.15G090700 Manihot esculenta
MBI07_g17037_MAGBIO Magnolia biondii
MBI15_g40755_MAGBIO Magnolia biondii
MD03G1237600 Malus domestica
MD09G1240900 Malus domestica
MD11G1258200 Malus domestica
MD17G1233900 Malus domestica
Medtr2g078360 Medicago truncatula
Medtr2g078370 Medicago truncatula
Medtr2g090900 Medicago truncatula
Medtr4g079500 Medicago truncatula
MELO3C018845.2 Cucumis melo
MELO3C019312.2 Cucumis melo
MELO3C025623.2 Cucumis melo
Migut.M00192 Erythranthe guttata
Migut.M00759 Erythranthe guttata
MSTRG.14946 Avicennia marina
MSTRG.15114 Avicennia marina
Nitab4.5_0000246g0100 Nicotiana tabacum
Nitab4.5_0000537g0020 Nicotiana tabacum
Nitab4.5_0000831g0030 Nicotiana tabacum
Nitab4.5_0002629g0100 Nicotiana tabacum
Nitab4.5_0006823g0010 Nicotiana tabacum
Nitab4.5_0011793g0010 Nicotiana tabacum
Nn1g01027 Nelumbo nucifera
Nn1g04300 Nelumbo nucifera
Nn1g06336 Nelumbo nucifera
Nn6g33807 Nelumbo nucifera
Oeu005395.1 Olea europaea
Oeu051099.1 Olea europaea
Oeu061329.1 Olea europaea
Oeu064834.1 Olea europaea
Os01g0211800 Oryza sativa ssp. japonica
Os01g0756200 Oryza sativa ssp. japonica
Os02g0247100 Oryza sativa ssp. japonica
Peaxi162Scf00069g01927 Petunia axillaris
Peaxi162Scf00189g00124 Petunia axillaris
Peaxi162Scf00384g00069 Petunia axillaris
PGR031G3645 Punica granatum
PGR042G1464 Punica granatum
PGR142G3291 Punica granatum
PGSC0003DMG400009388 Solanum tuberosum
PGSC0003DMG400012436 Solanum tuberosum
PGSC0003DMG401007810 Solanum tuberosum
Phvul.005G068500 Phaseolus vulgaris
Phvul.005G097800 Phaseolus vulgaris
Phvul.011G116800 Phaseolus vulgaris
Potri.001G374200 Populus trichocarpa
Potri.013G124400 Populus trichocarpa
Potri.019G091900 Populus trichocarpa
Pp3c24_10470 Physcomitrium patens
Pp3c2_26970 Physcomitrium patens
Pp3c5_20330 Physcomitrium patens
Pp3c6_7520 Physcomitrium patens
Pp3c8_11470 Physcomitrium patens
Prupe.3G125500 Prunus persica
Prupe.4G172000 Prunus persica
Prupe.6G282200 Prunus persica
Psat5g240960 Pisum sativum
Psat5g275000 Pisum sativum
Psat7g166600 Pisum sativum
PSO541G5259 Papaver somniferum
PSO675G6960 Papaver somniferum
QL07p034309 Quercus lobata
QL08p027653 Quercus lobata
QL08p040962 Quercus lobata
RcHm_v2.0_Chr2g0128811 Rosa chinensis
RcHm_v2.0_Chr5g0031811 Rosa chinensis
Rhsim06G0135000 Rhododendron simsii
Rhsim06G0204100 Rhododendron simsii
Sabra16G0246600 Salix brachista
Sabra19G0105300 Salix brachista
SalBow7G2546 Salvia bowleyana
SalBow8G2046 Salvia bowleyana
SalBow8G3145 Salvia bowleyana
Sc12g0003320 Simmondsia chinensis
Sc16g0007380 Simmondsia chinensis
Sed0000931 Sechium edule
Sed0006722 Sechium edule
Sed0008528 Sechium edule
Sed0014927 Sechium edule
Sed0018985 Sechium edule
SEGI_18269 Sequoiadendron giganteum
SGA_v2.0_scaffold34G13764 Striga asiatica
SGA_v2.0_scaffold73G24212 Striga asiatica
SHI27683 Sapria himalayana
SMO116G0479 Selaginella moellendorffii
SMO343G0127 Selaginella moellendorffii
SMO367G0542 Selaginella moellendorffii
Solyc07g062710.4 Solanum lycopersicum
Solyc12g010800.2 Solanum lycopersicum
Sopen07g027410 Solanum pennellii
Sopen07g030940 Solanum pennellii
Sopen12g006170 Solanum pennellii
Sp4g24530 Schrenkiella parvula
Sp5g04600 Schrenkiella parvula
TAR344G0005 Trochodendron aralioides
TAR624G0475 Trochodendron aralioides
TAR624G0577 Trochodendron aralioides
TAR626G1972 Trochodendron aralioides
TAR627G0822 Trochodendron aralioides
THA.LOC104802248 Tarenaya hassleriana
THA.LOC104822612 Tarenaya hassleriana
Thecc.01G241600 Theobroma cacao
Thecc.05G010100 Theobroma cacao
Thecc.07G102500 Theobroma cacao
Thhalv10006090m.g Eutrema salsugineum
Thhalv10016923m.g Eutrema salsugineum
TPR.G14939 Trifolium pratense
TPR.G6430 Trifolium pratense
TWI14G1374 Tripterygium wilfordii
TWI23G0692 Tripterygium wilfordii
TWI38G0826 Tripterygium wilfordii
TWI59G1477 Tripterygium wilfordii
TWI74G1424 Tripterygium wilfordii
unitig_37.g12563 Utricularia gibba
unitig_46.g18313 Utricularia gibba
unitig_62.g23334 Utricularia gibba
unitig_746.g26667 Utricularia gibba
unitig_899.g15323 Utricularia gibba
vmacro11903 Vaccinium macrocarpon
vmacro12360 Vaccinium macrocarpon
VMungo1080G0405 Vigna mungo
VMungo1080G1262 Vigna mungo
VMungo1127G0198 Vigna mungo
Zm00001eb152810 Zea mays
Zm00001eb204490 Zea mays
Zm00001eb238570 Zea mays
Zm00001eb370720 Zea mays

User provided reference genes

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