Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02960 Brassica napus
A05p38890 Brassica napus
A08p21720 Brassica napus
Aa31LG3G2770 Aethionema arabicum
Aa31LG6G12700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.428 Anthoceros agrestis
Actinidia09278 Actinidia chinensis
Actinidia15470 Actinidia chinensis
Actinidia17026 Actinidia chinensis
Actinidia17395 Actinidia chinensis
Actinidia22931 Actinidia chinensis
Actinidia39174 Actinidia chinensis
Ah.04g151140 Amaranthus hybridus
AL3G21550 Arabidopsis lyrata
AL7G15350 Arabidopsis lyrata
Aqoxy2G00326 Aquilegia oxysepala
Aqoxy2G03782 Aquilegia oxysepala
Aqoxy6G01890 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.PGUC9R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q1RH66 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T9DT73 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XXX690 Arachis hypogaea
AT3G10210 Arabidopsis thaliana
AT4G35750 Arabidopsis thaliana
ATR0661G153 Amborella trichopoda
ATR0721G032 Amborella trichopoda
Atru.chr1.1285 Acer truncatum
Atru.chr13.194 Acer truncatum
Atru.chr3.927 Acer truncatum
AUR62026209 Chenopodium quinoa
AUR62026385 Chenopodium quinoa
AUR62030364 Chenopodium quinoa
AUR62040847 Chenopodium quinoa
BcaC01g00517 Brassica carinata
BcaNung05524 Brassica carinata
BolC1t00316H Brassica oleracea
BolC3t20341H Brassica oleracea
BolC5t34448H Brassica oleracea
BraA01t00279Z Brassica rapa
BraA05t22681Z Brassica rapa
BraA08t34124Z Brassica rapa
C01p03310 Brassica napus
C03p80870 Brassica napus
C05p57930 Brassica napus
CAN.G311.84 Capsicum annuum
CAN.G3404.1 Capsicum annuum
CAN.G890.16 Capsicum annuum
CANSAT25G3011 Cannabis sativa
CANSAT25G3751 Cannabis sativa
CANSAT80G0393 Cannabis sativa
CANSAT80G0737 Cannabis sativa
CARHR084700 Cardamine hirsuta
CARHR244090 Cardamine hirsuta
Carub.0003s0938 Capsella rubella
Carub.0007s0450 Capsella rubella
Ca_08397_v3 Cicer arietinum L.
Ca_24952_v3 Cicer arietinum L.
Ca_30718_v3 Cicer arietinum L.
Ca_30854_v3 Cicer arietinum L.
Cc06_g18600 Coffea canephora
Cc07_g11460 Coffea canephora
CDE02G0608 Ceratophyllum demersum
CDE04G1851 Ceratophyllum demersum
CDE05G0777 Ceratophyllum demersum
CDE05G2978 Ceratophyllum demersum
CDE05G3668 Ceratophyllum demersum
CDE06G0948 Ceratophyllum demersum
CDE06G2765 Ceratophyllum demersum
CDE10G1340 Ceratophyllum demersum
Cfa007041 Carpinus fangiana
Cfa014021 Carpinus fangiana
Cfa014023 Carpinus fangiana
Cfa016726 Carpinus fangiana
Cfa016728 Carpinus fangiana
Ciclev10002541m.g Citrus clementina
Ciclev10005702m.g Citrus clementina
Ciclev10026500m.g Citrus clementina
CiPaw.07G005700 Carya illinoinensis
CiPaw.07G142300 Carya illinoinensis
CiPaw.09G044300 Carya illinoinensis
ClCG08G013950 Citrullus lanatus
ClCG10G000410 Citrullus lanatus
ClCG10G016020 Citrullus lanatus
COL.COLO4_22510 Corchorus olitorius
COL.COLO4_26064 Corchorus olitorius
COL.COLO4_33940 Corchorus olitorius
Cpa.g.sc26.245 Carica papaya
Cpa.g.sc5.197 Carica papaya
Cpa.g.sc6.339 Carica papaya
Cre16.g691500 Chlamydomonas reinhardtii
CsaV3_2G024530 Cucumis sativus L.
CsaV3_3G000430 Cucumis sativus L.
CsaV3_3G040430 Cucumis sativus L.
CsaV3_7G023170 Cucumis sativus L.
CSS0023588 Camellia sinensis var. sinensis
CSS0028832 Camellia sinensis var. sinensis
CSS0035118 Camellia sinensis var. sinensis
CSS0037446 Camellia sinensis var. sinensis
DCAR_016873 Daucus carota
DCAR_016874 Daucus carota
DCAR_023002 Daucus carota
DCAR_027630 Daucus carota
Dinv08541 Davidia involucrata
Dinv18488 Davidia involucrata
Dinv31907 Davidia involucrata
Dinv36830 Davidia involucrata
Dinv39565 Davidia involucrata
Dinv40155 Davidia involucrata
Duzib041G0226 Durio zibethinus
Duzib106G1363 Durio zibethinus
Duzib147G1330 Durio zibethinus
Duzib187G1544 Durio zibethinus
ECA238G3458 Erigeron canadensis
ECA246G4204 Erigeron canadensis
ECA247G2527 Erigeron canadensis
EL10Ac3g07191 Beta vulgaris
EL10Ac6g13344 Beta vulgaris
Eucgr.A02266 Eucalyptus grandis
Eucgr.F01707 Eucalyptus grandis
Eucgr.J02500 Eucalyptus grandis
FAN05G4024 Fragaria x ananassa
FAN09G0789 Fragaria x ananassa
FAN14G5029 Fragaria x ananassa
FAN15G3614 Fragaria x ananassa
FAN19G2879 Fragaria x ananassa
FAN20G0476 Fragaria x ananassa
FAN23G0396 Fragaria x ananassa
FAN26G1215 Fragaria x ananassa
FAN27G0525 Fragaria x ananassa
FvH4_1g10910 Fragaria vesca
FvH4_6g25120 Fragaria vesca
Glyma.01G161200 Glycine max
Glyma.03G128800 Glycine max
Glyma.11G082500 Glycine max
Glyma.19G131200 Glycine max
Gohir.A01G108600 Gossypium hirsutum
Gohir.A02G175300 Gossypium hirsutum
Gohir.A09G118800 Gossypium hirsutum
Gohir.A12G058150 Gossypium hirsutum
Gohir.A13G182001 Gossypium hirsutum
Gohir.D01G095400 Gossypium hirsutum
Gohir.D03G004425 Gossypium hirsutum
Gohir.D03G004500 Gossypium hirsutum
Gohir.D09G115456 Gossypium hirsutum
Gohir.D12G058001 Gossypium hirsutum
Gohir.D13G185950 Gossypium hirsutum
Gorai.002G120400 Gossypium raimondii
Gorai.003G004800 Gossypium raimondii
Gorai.006G133400 Gossypium raimondii
Gorai.008G061200 Gossypium raimondii
GSVIVG01006259001 Vitis vinifera
GSVIVG01008718001 Vitis vinifera
GSVIVG01033575001 Vitis vinifera
HanXRQChr03g0067201 Helianthus annuus
HanXRQChr07g0192521 Helianthus annuus
HanXRQChr10g0292831 Helianthus annuus
HanXRQChr14g0442101 Helianthus annuus
HanXRQChr16g0520561 Helianthus annuus
HanXRQChr16g0531621 Helianthus annuus
Haze_03688 Corylus avellana
Haze_19736 Corylus avellana
Haze_22728 Corylus avellana
Hma1.2p1_0023F.1_g015890 Hydrangea macrophylla
Hma1.2p1_0056F.1_g031860 Hydrangea macrophylla
Hma1.2p1_0552F.1_g177660 Hydrangea macrophylla
Hma1.2p1_2322F.1_g319930 Hydrangea macrophylla
Hma1.2p1_2849F.1_g329390 Hydrangea macrophylla
HPP92_003492 Vanilla planifolia
HPP92_026890 Vanilla planifolia
Hund14177 Selenicereus undatus
Hund19111 Selenicereus undatus
Lalb_Chr05g0212071 Lupinus albus
Lalb_Chr09g0321381 Lupinus albus
Lalb_Chr22g0357331 Lupinus albus
Lj1A1107T59 Lonicera japonica
Lj1g0005899 Lotus japonicus
Lj2A487T64 Lonicera japonica
Lj2g0014974 Lotus japonicus
Lsat_1_v5_gn_2_75201 Lactuca sativa
Lsat_1_v5_gn_9_30000 Lactuca sativa
Manes.01G152100 Manihot esculenta
Manes.02G111300 Manihot esculenta
Manes.05G141500 Manihot esculenta
Manes.09G008300 Manihot esculenta
Mapoly0027s0072 Marchantia polymorpha
MBI08_g07885_MAGBIO Magnolia biondii
MBI19_g17539_MAGBIO Magnolia biondii
MD00G1048900 Malus domestica
MD00G1074100 Malus domestica
MD02G1122200 Malus domestica
MD08G1006200 Malus domestica
MD15G1005600 Malus domestica
MD15G1236100 Malus domestica
Medtr5g023210 Medicago truncatula
Medtr7g090050 Medicago truncatula
MELO3C009777.2 Cucumis melo
MELO3C013738.2 Cucumis melo
Migut.C00910 Erythranthe guttata
Migut.K00108 Erythranthe guttata
MSTRG.1138 Avicennia marina
MSTRG.25282 Avicennia marina
MSTRG.26135 Avicennia marina
Nitab4.5_0001696g0070 Nicotiana tabacum
Nitab4.5_0003134g0050 Nicotiana tabacum
Nitab4.5_0003280g0030 Nicotiana tabacum
Nitab4.5_0004259g0030 Nicotiana tabacum
Nitab4.5_0010323g0010 Nicotiana tabacum
Nn3g21549 Nelumbo nucifera
Nn4g24822 Nelumbo nucifera
Nn4g24823 Nelumbo nucifera
Nn6g31865 Nelumbo nucifera
Nn7g36581 Nelumbo nucifera
Oeu008199.1 Olea europaea
Oeu017910.1 Olea europaea
Oeu021478.1 Olea europaea
Os01g0948300 Oryza sativa ssp. japonica
Os02g0668500 Oryza sativa ssp. japonica
Os04g0561200 Oryza sativa ssp. japonica
Peaxi162Scf00130g01323 Petunia axillaris
Peaxi162Scf00174g01117 Petunia axillaris
Peaxi162Scf00300g00117 Petunia axillaris
PGR031G2191 Punica granatum
PGR083G1698 Punica granatum
PGR083G2542 Punica granatum
PGR102G1129 Punica granatum
PGSC0003DMG400001579 Solanum tuberosum
PGSC0003DMG400009889 Solanum tuberosum
PGSC0003DMG400010645 Solanum tuberosum
Phvul.001G124200 Phaseolus vulgaris
Phvul.001G124500 Phaseolus vulgaris
Phvul.002G112800 Phaseolus vulgaris
Potri.002G014700 Populus trichocarpa
Potri.005G107300 Populus trichocarpa
Potri.005G246800 Populus trichocarpa
Potri.006G043166 Populus trichocarpa
Pp3c6_21470 Physcomitrium patens
PRCOL_00005681 Prasinoderma coloniale
Prupe.1G358200 Prunus persica
Prupe.7G046200 Prunus persica
Prupe.7G056900 Prunus persica
Prupe.7G176400 Prunus persica
Psat2g151120 Pisum sativum
Psat3g078280 Pisum sativum
PSO063G2722 Papaver somniferum
PSO541G2750 Papaver somniferum
PSO675G5164 Papaver somniferum
PSO754G0070 Papaver somniferum
QL02p013367 Quercus lobata
QL06p052330 Quercus lobata
QL07p006615 Quercus lobata
RcHm_v2.0_Chr2g0098171 Rosa chinensis
RcHm_v2.0_Chr2g0124961 Rosa chinensis
RcHm_v2.0_Chr6g0303811 Rosa chinensis
Rhsim03G0034600 Rhododendron simsii
Rhsim06G0010300 Rhododendron simsii
Rhsim10G0203800 Rhododendron simsii
RhsimUnG0217400 Rhododendron simsii
Sabra02G0011700 Salix brachista
Sabra05G0087900 Salix brachista
Sabra06G0029400 Salix brachista
SalBow1G8309 Salvia bowleyana
SalBow7G2595 Salvia bowleyana
Sc13g0001360 Simmondsia chinensis
Sc16g0001770 Simmondsia chinensis
Sed0001007 Sechium edule
Sed0012966 Sechium edule
Sed0014451 Sechium edule
Sed0014795 Sechium edule
SEGI_11498 Sequoiadendron giganteum
SGA_v2.0_scaffold275G46547 Striga asiatica
SGA_v2.0_scaffold94G28500 Striga asiatica
SHI43125 Sapria himalayana
SMO119G0272 Selaginella moellendorffii
SMO347G0588 Selaginella moellendorffii
Solyc02g083250.3 Solanum lycopersicum
Solyc04g040200.3 Solanum lycopersicum
Solyc04g082050.3 Solanum lycopersicum
Solyc08g036413.1 Solanum lycopersicum
Sopen02g028040 Solanum pennellii
Sopen03g018010 Solanum pennellii
Sopen04g009930 Solanum pennellii
Sopen04g035700 Solanum pennellii
Sopen09g019500 Solanum pennellii
Sp3g08490 Schrenkiella parvula
Sp7g33510 Schrenkiella parvula
TAR369G0478 Trochodendron aralioides
TAR369G0889 Trochodendron aralioides
TAR381G0832 Trochodendron aralioides
TAR623G0170 Trochodendron aralioides
TAR625G0102 Trochodendron aralioides
THA.LOC104807521 Tarenaya hassleriana
THA.LOC104816409 Tarenaya hassleriana
Thecc.01G010000 Theobroma cacao
Thecc.05G141300 Theobroma cacao
Thecc.08G054000 Theobroma cacao
Thhalv10021434m.g Eutrema salsugineum
Thhalv10026273m.g Eutrema salsugineum
TPR.G25104 Trifolium pratense
TPR.G30625 Trifolium pratense
TWI12G0772 Tripterygium wilfordii
TWI77G0735 Tripterygium wilfordii
unitig_26.g9889 Utricularia gibba
unitig_736.g22288 Utricularia gibba
vmacro07824 Vaccinium macrocarpon
vmacro20503 Vaccinium macrocarpon
vmacro21842 Vaccinium macrocarpon
VMungo1215G1149 Vigna mungo
VMungo1383G2166 Vigna mungo
Zm00001eb141230 Zea mays
Zm00001eb250110 Zea mays
Zm00001eb363130 Zea mays

User provided reference genes

Program Settings