Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p12660 Brassica napus
A06p38230 Brassica napus
A07p27350 Brassica napus
A07p44180 Brassica napus
Aa31LG11G8370 Aethionema arabicum
Aa31LG4G1960 Aethionema arabicum
Aa31LG7G1160 Aethionema arabicum
Actinidia30337 Actinidia chinensis
Actinidia31568 Actinidia chinensis
Actinidia35438 Actinidia chinensis
Actinidia37108 Actinidia chinensis
Ah.04g163370 Amaranthus hybridus
Ah.13g071530 Amaranthus hybridus
AL1G28840 Arabidopsis lyrata
AL2G39490 Arabidopsis lyrata
AL8G23400 Arabidopsis lyrata
Aqoxy1G01587 Aquilegia oxysepala
Aqoxy5G02710 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.IQG6ND Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K3Q6F6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L9KMYJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P1PAWM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S1YDUW Arachis hypogaea
AT1G16680 Arabidopsis thaliana
AT1G79030 Arabidopsis thaliana
AT5G49580 Arabidopsis thaliana
ATR0165G035 Amborella trichopoda
ATR0693G275 Amborella trichopoda
Atru.BG.95.p Acer truncatum
Atru.chr2.1846 Acer truncatum
AUR62016245 Chenopodium quinoa
AUR62032775 Chenopodium quinoa
AUR62041261 Chenopodium quinoa
AUR62041932 Chenopodium quinoa
BcaB02g07193 Brassica carinata
BcaB02g08661 Brassica carinata
BcaC03g17737 Brassica carinata
BcaC05g25531 Brassica carinata
BcaC06g30719 Brassica carinata
BcaC08g45390 Brassica carinata
BcaC08g47467 Brassica carinata
BcaNung05956 Brassica carinata
BolC2t11822H Brassica oleracea
BolC2t11823H Brassica oleracea
BolC5t30211H Brassica oleracea
BolC6t38184H Brassica oleracea
BolC6t40309H Brassica oleracea
BolC7t44533H Brassica oleracea
BraA06t24427Z Brassica rapa
BraA06t26738Z Brassica rapa
BraA07t30376Z Brassica rapa
BraA07t31926Z Brassica rapa
C02p57470 Brassica napus
C05p14960 Brassica napus
C06p30210 Brassica napus
C06p52910 Brassica napus
C07p40000 Brassica napus
CAN.G244.17 Capsicum annuum
CAN.G943.24 Capsicum annuum
CANSAT56G2177 Cannabis sativa
CANSAT78G1175 Cannabis sativa
CARHR017140 Cardamine hirsuta
CARHR072700 Cardamine hirsuta
CARHR288030 Cardamine hirsuta
Carub.0001s1641 Capsella rubella
Carub.0002s2590 Capsella rubella
Carub.0008s0945 Capsella rubella
Ca_00958_v3 Cicer arietinum L.
Ca_03708_v3 Cicer arietinum L.
CBR_g8288 Chara braunii
Cc03_g00520 Coffea canephora
Cc03_g00530 Coffea canephora
Cc05_g15890 Coffea canephora
CDE02G1811 Ceratophyllum demersum
CDE02G2661 Ceratophyllum demersum
CDE05G3269 Ceratophyllum demersum
CDE12G0061 Ceratophyllum demersum
CDE12G0196 Ceratophyllum demersum
Cfa015276 Carpinus fangiana
Cfa019442 Carpinus fangiana
Ciclev10004408m.g Citrus clementina
Ciclev10019555m.g Citrus clementina
CiPaw.01G134500 Carya illinoinensis
CiPaw.02G072500 Carya illinoinensis
CiPaw.11G066700 Carya illinoinensis
CiPaw.11G066800 Carya illinoinensis
ClCG06G004400 Citrullus lanatus
ClCG07G010670 Citrullus lanatus
COL.COLO4_07049 Corchorus olitorius
COL.COLO4_34568 Corchorus olitorius
Cpa.g.sc864.2 Carica papaya
Cpa.g.sc88.20 Carica papaya
Cpa.g.sc9.5 Carica papaya
Cpa.g.sc9.6 Carica papaya
Cre10.g445900 Chlamydomonas reinhardtii
CsaV3_4G007630 Cucumis sativus L.
CsaV3_6G028420 Cucumis sativus L.
CsaV3_6G028430 Cucumis sativus L.
CsaV3_UNG230090 Cucumis sativus L.
CsaV3_UNG230100 Cucumis sativus L.
CSS0018880 Camellia sinensis var. sinensis
CSS0022182 Camellia sinensis var. sinensis
CSS0022668 Camellia sinensis var. sinensis
CSS0033074 Camellia sinensis var. sinensis
DCAR_009631 Daucus carota
DCAR_019934 Daucus carota
DCAR_030450 Daucus carota
Dinv15136 Davidia involucrata
Dinv19629 Davidia involucrata
Dinv42523 Davidia involucrata
Dinv44255 Davidia involucrata
Duzib151G1027 Durio zibethinus
Duzib187G0769 Durio zibethinus
Duzib212G0181 Durio zibethinus
Duzib213G0956 Durio zibethinus
ECA240G4837 Erigeron canadensis
ECA246G4663 Erigeron canadensis
EL10Ac3g05553 Beta vulgaris
EL10Ac4g08538 Beta vulgaris
Eucgr.B03981 Eucalyptus grandis
Eucgr.F01444 Eucalyptus grandis
FAN07G0860 Fragaria x ananassa
FAN11G2640 Fragaria x ananassa
FAN12G3522 Fragaria x ananassa
FAN16G1883 Fragaria x ananassa
FAN21G1742 Fragaria x ananassa
FAN25G0042 Fragaria x ananassa
FvH4_3g16080 Fragaria vesca
FvH4_4g20670 Fragaria vesca
Glyma.01G055800 Glycine max
Glyma.08G173900 Glycine max
Glyma.09G032800 Glycine max
Glyma.15G137800 Glycine max
Glyma.15G253300 Glycine max
Glyma.17G182451 Glycine max
Gohir.A01G036900 Gossypium hirsutum
Gohir.A10G174700 Gossypium hirsutum
Gohir.A13G153500 Gossypium hirsutum
Gohir.D01G024200 Gossypium hirsutum
Gohir.D05G350866 Gossypium hirsutum
Gohir.D05G358000 Gossypium hirsutum
Gohir.D10G181200 Gossypium hirsutum
Gohir.D13G158100 Gossypium hirsutum
Gorai.002G032700 Gossypium raimondii
Gorai.008G076800 Gossypium raimondii
Gorai.009G381000 Gossypium raimondii
Gorai.011G202700 Gossypium raimondii
Gorai.013G178800 Gossypium raimondii
GSVIVG01020448001 Vitis vinifera
GSVIVG01034951001 Vitis vinifera
HanXRQChr03g0076661 Helianthus annuus
HanXRQChr05g0137881 Helianthus annuus
HanXRQChr08g0232821 Helianthus annuus
HanXRQChr09g0250461 Helianthus annuus
Haze_01351 Corylus avellana
Haze_08517 Corylus avellana
Hma1.2p1_0193F.1_g084480 Hydrangea macrophylla
Hma1.2p1_1400F.1_g280980 Hydrangea macrophylla
HPP92_013512 Vanilla planifolia
HPP92_013992 Vanilla planifolia
Hund02295 Selenicereus undatus
Hund03141 Selenicereus undatus
Hund11995 Selenicereus undatus
Lalb_Chr18g0058541 Lupinus albus
Lalb_Chr20g0108841 Lupinus albus
Lalb_Chr20g0120661 Lupinus albus
Lalb_Chr25g0285221 Lupinus albus
Lj1C903G6 Lonicera japonica
Lj3A834G66 Lonicera japonica
Lj3g0026710 Lotus japonicus
Lj6C694G9 Lonicera japonica
Lj6g0011183 Lotus japonicus
Lj8A185G57 Lonicera japonica
Lsat_1_v5_gn_6_116141 Lactuca sativa
Lsat_1_v5_gn_7_116081 Lactuca sativa
Lsat_1_v5_gn_9_88361 Lactuca sativa
Manes.03G083300 Manihot esculenta
Manes.03G207800 Manihot esculenta
Manes.15G102300 Manihot esculenta
Mapoly0071s0022 Marchantia polymorpha
MBI02_g25780_MAGBIO Magnolia biondii
MBI18_g27381_MAGBIO Magnolia biondii
MBI19_g03280_MAGBIO Magnolia biondii
MD05G1214400 Malus domestica
MD05G1214800 Malus domestica
MD10G1197900 Malus domestica
MD13G1148800 Malus domestica
MD13G1148900 Malus domestica
MD16G1149100 Malus domestica
Medtr1g035850 Medicago truncatula
Medtr2g033460 Medicago truncatula
Medtr2g064910 Medicago truncatula
Medtr4g101190 Medicago truncatula
MELO3C000671.2 Cucumis melo
MELO3C016178.2 Cucumis melo
MELO3C021254.2 Cucumis melo
MELO3C028679.2 Cucumis melo
Migut.G00036 Erythranthe guttata
Migut.G00037 Erythranthe guttata
Migut.M01569 Erythranthe guttata
Migut.O00587 Erythranthe guttata
MSTRG.10169 Avicennia marina
MSTRG.16121 Avicennia marina
MSTRG.3844 Avicennia marina
MSTRG.7050 Avicennia marina
Nitab4.5_0000294g0100 Nicotiana tabacum
Nitab4.5_0001235g0060 Nicotiana tabacum
Nitab4.5_0002264g0010 Nicotiana tabacum
Nitab4.5_0003420g0020 Nicotiana tabacum
Nn3g20197 Nelumbo nucifera
Nn3g21802 Nelumbo nucifera
Oeu002814.2 Olea europaea
Oeu022729.1 Olea europaea
Oeu045760.1 Olea europaea
Oeu052015.1 Olea europaea
Os03g0832900 Oryza sativa ssp. japonica
Os12g0612400 Oryza sativa ssp. japonica
Peaxi162Scf00228g00736 Petunia axillaris
Peaxi162Scf00232g00104 Petunia axillaris
PGR031G1058 Punica granatum
PGR083G2566 Punica granatum
PGSC0003DMG400022089 Solanum tuberosum
PGSC0003DMG400022136 Solanum tuberosum
Phvul.005G054900 Phaseolus vulgaris
Phvul.006G120300 Phaseolus vulgaris
Potri.001G438300 Populus trichocarpa
Potri.008G101800 Populus trichocarpa
Potri.010G148900 Populus trichocarpa
Potri.011G142000 Populus trichocarpa
Pp3c24_9110 Physcomitrium patens
PRCOL_00000480 Prasinoderma coloniale
Prupe.1G112900 Prunus persica
Prupe.4G144000 Prunus persica
Psat1g002120 Pisum sativum
Psat1g162440 Pisum sativum
Psat1g162480 Pisum sativum
Psat7g258920 Pisum sativum
PSO541G0610 Papaver somniferum
PSO675G4884 Papaver somniferum
PSO724G0123 Papaver somniferum
PSO724G0612 Papaver somniferum
PSO729G0267 Papaver somniferum
QL03p023659 Quercus lobata
QL04p075229 Quercus lobata
QL04p075315 Quercus lobata
QL04p075329 Quercus lobata
RcHm_v2.0_Chr4g0426071 Rosa chinensis
RcHm_v2.0_Chr4g0426081 Rosa chinensis
RcHm_v2.0_Chr5g0027051 Rosa chinensis
Rhsim04G0006300 Rhododendron simsii
Rhsim04G0242200 Rhododendron simsii
Sabra10G0114900 Salix brachista
Sabra11G0127400 Salix brachista
Sabra16G0296400 Salix brachista
SalBow8G1863 Salvia bowleyana
SalBow8G1973 Salvia bowleyana
Sc03g0007880 Simmondsia chinensis
Sc13g0007070 Simmondsia chinensis
Sed0005370 Sechium edule
Sed0025788 Sechium edule
Sed0028134 Sechium edule
SEGI_00273 Sequoiadendron giganteum
SEGI_03535 Sequoiadendron giganteum
SEGI_04700 Sequoiadendron giganteum
SEGI_11852 Sequoiadendron giganteum
SEGI_20213 Sequoiadendron giganteum
SEGI_27903 Sequoiadendron giganteum
SEGI_34087 Sequoiadendron giganteum
SEGI_40431 Sequoiadendron giganteum
SGA_v2.0_scaffold64G22095 Striga asiatica
SGA_v2.0_scaffold7G03567 Striga asiatica
SHI00104 Sapria himalayana
SHI00105 Sapria himalayana
SHI32894 Sapria himalayana
SHI32895 Sapria himalayana
Solyc07g026810.3 Solanum lycopersicum
Solyc07g066290.3 Solanum lycopersicum
Sopen07g011920 Solanum pennellii
Sopen07g034470 Solanum pennellii
Sp1g14820 Schrenkiella parvula
Sp2g19900 Schrenkiella parvula
Sp5g34080 Schrenkiella parvula
TAR362G0075 Trochodendron aralioides
TAR625G0348 Trochodendron aralioides
TAR627G0124 Trochodendron aralioides
TAR629G3364 Trochodendron aralioides
TAR633G0564 Trochodendron aralioides
THA.LOC104802710 Tarenaya hassleriana
THA.LOC104812347 Tarenaya hassleriana
Thecc.04G306000 Theobroma cacao
Thecc.07G157700 Theobroma cacao
Thhalv10003750m.g Eutrema salsugineum
Thhalv10007268m.g Eutrema salsugineum
Thhalv10018356m.g Eutrema salsugineum
TPR.G10345 Trifolium pratense
TPR.G21226 Trifolium pratense
TPR.G33910 Trifolium pratense
TWI38G2208 Tripterygium wilfordii
TWI39G0488 Tripterygium wilfordii
TWI53G0831 Tripterygium wilfordii
TWI73G1003 Tripterygium wilfordii
TWI75G1552 Tripterygium wilfordii
unitig_32.g11091 Utricularia gibba
unitig_32.g11846 Utricularia gibba
unitig_748.g7826 Utricularia gibba
vmacro07964 Vaccinium macrocarpon
vmacro09789 Vaccinium macrocarpon
VMungo0540G0227 Vigna mungo
VMungo1080G1177 Vigna mungo
Zm00001eb031650 Zea mays
Zm00001eb136040 Zea mays
Zm00001eb211330 Zea mays

User provided reference genes

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