Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p07170 Brassica napus
A03p11750 Brassica napus
A04p30400 Brassica napus
A05p06830 Brassica napus
A10p16560 Brassica napus
Aa31LG5G20060 Aethionema arabicum
Aa31sc23G360 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4306 Anthoceros agrestis
Actinidia02955 Actinidia chinensis
Actinidia37213 Actinidia chinensis
Ah.05g174060 Amaranthus hybridus
Ah.08g219280 Amaranthus hybridus
AL4G36970 Arabidopsis lyrata
AL8G35790 Arabidopsis lyrata
Aqoxy4G02951 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1I7MJM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPEE04 Arachis hypogaea
AT2G39560 Arabidopsis thaliana
AT5G59350 Arabidopsis thaliana
ATR0315G143 Amborella trichopoda
ATR0559G086 Amborella trichopoda
ATR0626G017 Amborella trichopoda
ATR0681G051 Amborella trichopoda
ATR0772G158 Amborella trichopoda
Atru.chr12.464 Acer truncatum
Atru.chr12.486 Acer truncatum
Atru.chr3.3858 Acer truncatum
AUR62001808 Chenopodium quinoa
AUR62009596 Chenopodium quinoa
AUR62038354 Chenopodium quinoa
AUR62041864 Chenopodium quinoa
BcaB01g04592 Brassica carinata
BcaB02g09110 Brassica carinata
BcaB05g22491 Brassica carinata
BcaB06g29097 Brassica carinata
BcaB08g36265 Brassica carinata
BcaC01g06530 Brassica carinata
BcaC02g07394 Brassica carinata
BcaC02g12088 Brassica carinata
BcaC03g14015 Brassica carinata
BcaC04g19783 Brassica carinata
BolC2t07352H Brassica oleracea
BolC3t13829H Brassica oleracea
BolC4t22417H Brassica oleracea
BolC4t28240H Brassica oleracea
BolC9t58037H Brassica oleracea
BraA02t05796Z Brassica rapa
BraA03t10487Z Brassica rapa
BraA04t18468Z Brassica rapa
BraA05t19649Z Brassica rapa
BraA10t43740Z Brassica rapa
C02p12500 Brassica napus
C03p13810 Brassica napus
C04p08000 Brassica napus
C04p67420 Brassica napus
C09p51750 Brassica napus
CAN.G1013.11 Capsicum annuum
CAN.G111.25 Capsicum annuum
CAN.G111.32 Capsicum annuum
CAN.G764.2 Capsicum annuum
CANSAT54G0127 Cannabis sativa
CANSAT56G2479 Cannabis sativa
CARHR134430 Cardamine hirsuta
CARHR285710 Cardamine hirsuta
Carub.0004s2163 Capsella rubella
Carub.0008s2002 Capsella rubella
Ca_01333_v3 Cicer arietinum L.
Cc01_g12700 Coffea canephora
Cc02_g08010 Coffea canephora
CDE02G0275 Ceratophyllum demersum
CDE04G1503 Ceratophyllum demersum
CDE08G0971 Ceratophyllum demersum
Cfa001494 Carpinus fangiana
Cfa004899 Carpinus fangiana
Ciclev10028872m.g Citrus clementina
Ciclev10032119m.g Citrus clementina
CiPaw.01G285100 Carya illinoinensis
CiPaw.02G183100 Carya illinoinensis
CiPaw.14G070000 Carya illinoinensis
ClCG02G020280 Citrullus lanatus
ClCG03G001620 Citrullus lanatus
ClCG09G019970 Citrullus lanatus
COL.COLO4_14995 Corchorus olitorius
COL.COLO4_18490 Corchorus olitorius
Cpa.g.c33193 Carica papaya
Cpa.g.c46284 Carica papaya
Cpa.g.sc1.395 Carica papaya
Cpa.g.sc45.46 Carica papaya
Cpa.g.sc840.1 Carica papaya
CsaV3_1G034060 Cucumis sativus L.
CsaV3_5G026480 Cucumis sativus L.
CsaV3_6G016980 Cucumis sativus L.
CSS0001235 Camellia sinensis var. sinensis
CSS0006598 Camellia sinensis var. sinensis
CSS0018575 Camellia sinensis var. sinensis
CSS0024371 Camellia sinensis var. sinensis
CSS0025955 Camellia sinensis var. sinensis
CSS0034701 Camellia sinensis var. sinensis
DCAR_005317 Daucus carota
DCAR_005978 Daucus carota
DCAR_015621 Daucus carota
DCAR_027636 Daucus carota
Dinv01579 Davidia involucrata
Dinv18505 Davidia involucrata
Dinv26001 Davidia involucrata
Dinv31446 Davidia involucrata
Duzib106G0156 Durio zibethinus
Duzib114G0657 Durio zibethinus
Duzib128G1760 Durio zibethinus
Duzib150G1281 Durio zibethinus
Duzib168G0932 Durio zibethinus
Duzib170G0504 Durio zibethinus
ECA233G1985 Erigeron canadensis
ECA236G0598 Erigeron canadensis
ECA238G3924 Erigeron canadensis
ECA247G2899 Erigeron canadensis
EL10Ac2g03394 Beta vulgaris
EL10Ac7g15996 Beta vulgaris
Eucgr.G02923 Eucalyptus grandis
Eucgr.J02060 Eucalyptus grandis
FAN01G1088 Fragaria x ananassa
FAN01G1666 Fragaria x ananassa
FAN03G0145 Fragaria x ananassa
FAN06G2166 Fragaria x ananassa
FAN06G3415 Fragaria x ananassa
FAN10G3914 Fragaria x ananassa
FAN11G3229 Fragaria x ananassa
FAN21G2799 Fragaria x ananassa
FAN25G2559 Fragaria x ananassa
FvH4_3g35750 Fragaria vesca
FvH4_7g22100 Fragaria vesca
Glyma.02G093100 Glycine max
Glyma.13G335100 Glycine max
Glyma.15G039400 Glycine max
Glyma.18G289200 Glycine max
Gohir.A03G040900 Gossypium hirsutum
Gohir.A05G096500 Gossypium hirsutum
Gohir.A05G301400 Gossypium hirsutum
Gohir.A07G096700 Gossypium hirsutum
Gohir.A10G216700 Gossypium hirsutum
Gohir.A13G019600 Gossypium hirsutum
Gohir.D03G127300 Gossypium hirsutum
Gohir.D05G096700 Gossypium hirsutum
Gohir.D05G301075 Gossypium hirsutum
Gohir.D07G101201 Gossypium hirsutum
Gohir.D10G225600 Gossypium hirsutum
Gohir.D13G020200 Gossypium hirsutum
Gorai.001G109100 Gossypium raimondii
Gorai.003G133600 Gossypium raimondii
Gorai.009G100200 Gossypium raimondii
Gorai.009G319200 Gossypium raimondii
Gorai.011G256800 Gossypium raimondii
Gorai.013G022600 Gossypium raimondii
GSVIVG01016563001 Vitis vinifera
GSVIVG01024989001 Vitis vinifera
GSVIVG01030358001 Vitis vinifera
HanXRQChr01g0011161 Helianthus annuus
HanXRQChr05g0134761 Helianthus annuus
HanXRQChr07g0201131 Helianthus annuus
HanXRQChr08g0220401 Helianthus annuus
HanXRQChr12g0370241 Helianthus annuus
HanXRQChr14g0458181 Helianthus annuus
HanXRQChr15g0493241 Helianthus annuus
Haze_17047 Corylus avellana
Haze_24076 Corylus avellana
Hma1.2p1_0683F.1_g202890 Hydrangea macrophylla
Hma1.2p1_1263F.1_g271270 Hydrangea macrophylla
Hma1.2p1_1888F.1_g306540 Hydrangea macrophylla
Lalb_Chr01g0003711 Lupinus albus
Lalb_Chr10g0091741 Lupinus albus
Lalb_Chr14g0375071 Lupinus albus
Lalb_Chr17g0336191 Lupinus albus
Lalb_Chr19g0137791 Lupinus albus
Lalb_Chr24g0394191 Lupinus albus
Lj1g0013000 Lotus japonicus
Lj1P155T25 Lonicera japonica
Lj1P935T28 Lonicera japonica
Lj3g0006925 Lotus japonicus
Lj3g0008186 Lotus japonicus
Lj8C85T13 Lonicera japonica
Lsat_1_v5_gn_2_119741 Lactuca sativa
Lsat_1_v5_gn_4_95361 Lactuca sativa
Lsat_1_v5_gn_5_167800 Lactuca sativa
Lsat_1_v5_gn_8_15640 Lactuca sativa
Lsat_1_v5_gn_8_78080 Lactuca sativa
Lsat_1_v5_gn_9_22761 Lactuca sativa
Manes.04G033700 Manihot esculenta
Manes.07G114700 Manihot esculenta
Manes.11G131700 Manihot esculenta
MBI05_g06551_MAGBIO Magnolia biondii
MBI12_g07472_MAGBIO Magnolia biondii
MBI14_g20632_MAGBIO Magnolia biondii
MBI14_g31245_MAGBIO Magnolia biondii
MBI14_g31246_MAGBIO Magnolia biondii
MD00G1137200 Malus domestica
MD11G1111600 Malus domestica
Medtr2g096720 Medicago truncatula
Medtr7g024480 Medicago truncatula
MELO3C013692.2 Cucumis melo
MELO3C020649.2 Cucumis melo
MELO3C021655.2 Cucumis melo
Migut.D02108 Erythranthe guttata
Migut.F01498 Erythranthe guttata
Migut.N02669 Erythranthe guttata
MSTRG.12643 Avicennia marina
MSTRG.17838 Avicennia marina
MSTRG.18585 Avicennia marina
MSTRG.300 Avicennia marina
Nitab4.5_0000070g0250 Nicotiana tabacum
Nitab4.5_0001800g0010 Nicotiana tabacum
Nitab4.5_0004078g0010 Nicotiana tabacum
Nitab4.5_0006095g0050 Nicotiana tabacum
Nitab4.5_0011022g0010 Nicotiana tabacum
Nn2g10398 Nelumbo nucifera
Nn5g26936 Nelumbo nucifera
Oeu007485.1 Olea europaea
Oeu021439.1 Olea europaea
Oeu038799.1 Olea europaea
Oeu043189.1 Olea europaea
Oeu054158.1 Olea europaea
Oeu059722.1 Olea europaea
Os11g0703600 Oryza sativa ssp. japonica
Peaxi162Scf00015g00142 Petunia axillaris
Peaxi162Scf00406g00051 Petunia axillaris
PGR102G2119 Punica granatum
PGR119G1724 Punica granatum
PGR142G1450 Punica granatum
PGSC0003DMG400000443 Solanum tuberosum
PGSC0003DMG400008699 Solanum tuberosum
PGSC0003DMG400023425 Solanum tuberosum
Phvul.008G012900 Phaseolus vulgaris
Phvul.L004543 Phaseolus vulgaris
Potri.001G238300 Populus trichocarpa
Potri.008G054400 Populus trichocarpa
Potri.009G029300 Populus trichocarpa
Potri.010G206100 Populus trichocarpa
Prupe.2G233200 Prunus persica
Prupe.6G080000 Prunus persica
Psat3g181480 Pisum sativum
Psat5g283760 Pisum sativum
PSO210G5037 Papaver somniferum
PSO339G0030 Papaver somniferum
PSO648G0075 Papaver somniferum
PSO832G2875 Papaver somniferum
PSO832G3134 Papaver somniferum
QL01p032435 Quercus lobata
QL08p059179 Quercus lobata
RcHm_v2.0_Chr1g0366491 Rosa chinensis
RcHm_v2.0_Chr5g0063921 Rosa chinensis
Rhsim01G0226700 Rhododendron simsii
Rhsim09G0165300 Rhododendron simsii
Rhsim13G0084200 Rhododendron simsii
Rhsim13G0084800 Rhododendron simsii
Sabra08G0039200 Salix brachista
Sabra09G0020400 Salix brachista
Sabra10G0159300 Salix brachista
Sabra16G0143600 Salix brachista
SalBow2G1147 Salvia bowleyana
SalBow3G3132 Salvia bowleyana
SalBow5G4430 Salvia bowleyana
SalBow6G4039 Salvia bowleyana
Sc09g0007040 Simmondsia chinensis
Sc12g0001570 Simmondsia chinensis
Sc21g0005670 Simmondsia chinensis
Sed0006133 Sechium edule
Sed0012460 Sechium edule
Sed0020416 Sechium edule
Sed0027687 Sechium edule
SEGI_03315 Sequoiadendron giganteum
SEGI_07847 Sequoiadendron giganteum
SEGI_31580 Sequoiadendron giganteum
SEGI_39638 Sequoiadendron giganteum
SGA_v2.0_scaffold230G43396 Striga asiatica
SMO140G0075 Selaginella moellendorffii
Solyc05g054530.1 Solanum lycopersicum
Solyc11g066080.2 Solanum lycopersicum
Sopen05g033010 Solanum pennellii
Sopen06g001410 Solanum pennellii
Sopen11g025820 Solanum pennellii
Sp4g21850 Schrenkiella parvula
Sp6g21030 Schrenkiella parvula
TAR369G0649 Trochodendron aralioides
TAR623G1329 Trochodendron aralioides
TAR633G2104 Trochodendron aralioides
TAR636G0464 Trochodendron aralioides
TAR636G0554 Trochodendron aralioides
THA.LOC104799446 Tarenaya hassleriana
THA.LOC104810021 Tarenaya hassleriana
THA.LOC104810787 Tarenaya hassleriana
Thecc.09G324000 Theobroma cacao
Thecc.10G044300 Theobroma cacao
Thhalv10014249m.g Eutrema salsugineum
Thhalv10017179m.g Eutrema salsugineum
TPR.G13950 Trifolium pratense
TPR.G15493 Trifolium pratense
TPR.G34307 Trifolium pratense
TWI15G1205 Tripterygium wilfordii
TWI31G0607 Tripterygium wilfordii
TWI38G0694 Tripterygium wilfordii
TWI75G0586 Tripterygium wilfordii
TWI79G0451 Tripterygium wilfordii
unitig_0.g230 Utricularia gibba
unitig_60.g25688 Utricularia gibba
unitig_62.g23941 Utricularia gibba
unitig_747.g22027 Utricularia gibba
vmacro03087 Vaccinium macrocarpon
vmacro10242 Vaccinium macrocarpon
vmacro22944 Vaccinium macrocarpon
VMungo1080G0971 Vigna mungo
VMungo1383G0536 Vigna mungo
Zm00001eb164650 Zea mays
Zm00001eb283160 Zea mays

User provided reference genes

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