Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p09510 Brassica napus
A02p08060 Brassica napus
A09p58810 Brassica napus
A10p16180 Brassica napus
Aa31LG2G21980 Aethionema arabicum
Aa31LG3G13790 Aethionema arabicum
Aa31LG8G17500 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1448 Anthoceros agrestis
Actinidia11008 Actinidia chinensis
Actinidia11098 Actinidia chinensis
Ah.04g160440 Amaranthus hybridus
AL3G53650 Arabidopsis lyrata
AL7G24140 Arabidopsis lyrata
AL8G34080 Arabidopsis lyrata
Aqoxy1G02270 Aquilegia oxysepala
Aqoxy6G02864 Aquilegia oxysepala
Aqoxy7G03429 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7D08F5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CL36ZV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D8DRS0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K4YLM1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LGR7RE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M4PPZI Arachis hypogaea
AT2G20590 Arabidopsis thaliana
AT4G28430 Arabidopsis thaliana
AT5G58000 Arabidopsis thaliana
ATR0602G242 Amborella trichopoda
ATR0739G045 Amborella trichopoda
Atru.chr6.2940 Acer truncatum
Atru.chr7.100 Acer truncatum
AUR62036047 Chenopodium quinoa
AUR62038980 Chenopodium quinoa
AUR62039745 Chenopodium quinoa
AUR62043252 Chenopodium quinoa
BcaB05g22392 Brassica carinata
BcaB08g34919 Brassica carinata
BcaB08g36161 Brassica carinata
BcaC07g41204 Brassica carinata
BcaC09g51645 Brassica carinata
BcaNung01567 Brassica carinata
BolC1t01068H Brassica oleracea
BolC2t07489H Brassica oleracea
BolC5t30574H Brassica oleracea
BolC8t51773H Brassica oleracea
BolC9t57832H Brassica oleracea
BraA01t00893Z Brassica rapa
BraA02t05879Z Brassica rapa
BraA04t17241Z Brassica rapa
BraA05t22884Z Brassica rapa
BraA09t41267Z Brassica rapa
BraA10t43611Z Brassica rapa
C01p11060 Brassica napus
C02p13700 Brassica napus
C08p42130 Brassica napus
C09p49820 Brassica napus
CAN.G1424.11 Capsicum annuum
CAN.G209.16 Capsicum annuum
CAN.G551.37 Capsicum annuum
CANSAT11G0512 Cannabis sativa
CANSAT64G1773 Cannabis sativa
CARHR111170 Cardamine hirsuta
CARHR236200 Cardamine hirsuta
CARHR271790 Cardamine hirsuta
Carub.0003s3508 Capsella rubella
Carub.0007s1227 Capsella rubella
Carub.0008s1853 Capsella rubella
Ca_05791_v3 Cicer arietinum L.
Ca_09438_v3 Cicer arietinum L.
Ca_18926_v3 Cicer arietinum L.
Cc05_g07620 Coffea canephora
Cc06_g15140 Coffea canephora
CDE02G0562 Ceratophyllum demersum
CDE05G2969 Ceratophyllum demersum
CDE10G1003 Ceratophyllum demersum
CDE12G0918 Ceratophyllum demersum
Cfa014652 Carpinus fangiana
Cfa020837 Carpinus fangiana
Ciclev10015408m.g Citrus clementina
Ciclev10028046m.g Citrus clementina
CiPaw.03G180600 Carya illinoinensis
CiPaw.15G175400 Carya illinoinensis
CiPaw.16G113900 Carya illinoinensis
ClCG02G017090 Citrullus lanatus
ClCG02G017910 Citrullus lanatus
ClCG06G012320 Citrullus lanatus
COL.COLO4_08067 Corchorus olitorius
COL.COLO4_18793 Corchorus olitorius
COL.COLO4_18794 Corchorus olitorius
COL.COLO4_20523 Corchorus olitorius
COL.COLO4_29169 Corchorus olitorius
COL.COLO4_36190 Corchorus olitorius
Cpa.g.sc46.141 Carica papaya
Cpa.g.sc46.142 Carica papaya
Cpa.g.sc83.84 Carica papaya
CsaV3_1G028840 Cucumis sativus L.
CsaV3_2G003680 Cucumis sativus L.
CsaV3_6G015270 Cucumis sativus L.
CSS0000642 Camellia sinensis var. sinensis
CSS0001471 Camellia sinensis var. sinensis
CSS0001593 Camellia sinensis var. sinensis
CSS0014039 Camellia sinensis var. sinensis
CSS0035282 Camellia sinensis var. sinensis
CSS0036585 Camellia sinensis var. sinensis
CSS0047757 Camellia sinensis var. sinensis
DCAR_014814 Daucus carota
DCAR_019386 Daucus carota
DCAR_021259 Daucus carota
Dinv06865 Davidia involucrata
Dinv10162 Davidia involucrata
Dinv11366 Davidia involucrata
Dinv41387 Davidia involucrata
Duzib052G0640 Durio zibethinus
Duzib132G0968 Durio zibethinus
Duzib132G1170 Durio zibethinus
Duzib150G0547 Durio zibethinus
Duzib168G2318 Durio zibethinus
Duzib187G1505 Durio zibethinus
ECA246G3173 Erigeron canadensis
EL10Ac6g14117 Beta vulgaris
EL10Ac8g18853 Beta vulgaris
Eucgr.A01854 Eucalyptus grandis
Eucgr.B01702 Eucalyptus grandis
Eucgr.C00355 Eucalyptus grandis
Eucgr.C02575 Eucalyptus grandis
Eucgr.G02883 Eucalyptus grandis
Eucgr.H01835 Eucalyptus grandis
Eucgr.K03028 Eucalyptus grandis
Eucgr.L02085 Eucalyptus grandis
FAN02G1860 Fragaria x ananassa
FAN05G3319 Fragaria x ananassa
FAN09G2941 Fragaria x ananassa
FAN14G1013 Fragaria x ananassa
FAN19G2520 Fragaria x ananassa
FAN23G0309 Fragaria x ananassa
FAN26G0651 Fragaria x ananassa
FAN28G0826 Fragaria x ananassa
FvH4_1g01050 Fragaria vesca
FvH4_6g26620 Fragaria vesca
Glyma.02G203100 Glycine max
Glyma.06G221600 Glycine max
Glyma.06G289900 Glycine max
Glyma.12G117102 Glycine max
Glyma.12G206000 Glycine max
Glyma.13G294800 Glycine max
Glyma.17G074600 Glycine max
Gohir.A03G155000 Gossypium hirsutum
Gohir.A05G052200 Gossypium hirsutum
Gohir.A06G096900 Gossypium hirsutum
Gohir.A07G163200 Gossypium hirsutum
Gohir.A10G119100 Gossypium hirsutum
Gohir.A13G184451 Gossypium hirsutum
Gohir.D02G178000 Gossypium hirsutum
Gohir.D05G053700 Gossypium hirsutum
Gohir.D06G097400 Gossypium hirsutum
Gohir.D13G190800 Gossypium hirsutum
Gorai.005G199800 Gossypium raimondii
Gorai.009G055500 Gossypium raimondii
Gorai.010G112500 Gossypium raimondii
Gorai.013G216600 Gossypium raimondii
GSVIVG01020595001 Vitis vinifera
HanXRQChr05g0148671 Helianthus annuus
HanXRQChr06g0171421 Helianthus annuus
HanXRQChr13g0424751 Helianthus annuus
HanXRQChr17g0541741 Helianthus annuus
Haze_13224 Corylus avellana
Haze_18688 Corylus avellana
Haze_19220 Corylus avellana
HPP92_003753 Vanilla planifolia
HPP92_003754 Vanilla planifolia
HPP92_021669 Vanilla planifolia
Lalb_Chr03g0029601 Lupinus albus
Lalb_Chr07g0179811 Lupinus albus
Lalb_Chr08g0234111 Lupinus albus
Lalb_Chr11g0072721 Lupinus albus
Lalb_Chr14g0367101 Lupinus albus
Lalb_Chr22g0356661 Lupinus albus
Lj3g0002629 Lotus japonicus
Lj3g0013195 Lotus japonicus
Lj3g0024162 Lotus japonicus
Lj6g0008983 Lotus japonicus
Lj7P457T37 Lonicera japonica
Lj8A108T65 Lonicera japonica
Lj9C716T6 Lonicera japonica
Lsat_1_v5_gn_0_18080 Lactuca sativa
Lsat_1_v5_gn_3_38820 Lactuca sativa
Lsat_1_v5_gn_4_154900 Lactuca sativa
Lsat_1_v5_gn_8_61721 Lactuca sativa
Manes.06G036600 Manihot esculenta
Manes.13G142900 Manihot esculenta
Manes.14G112628 Manihot esculenta
Mapoly0001s0070 Marchantia polymorpha
Mapoly0179s0001 Marchantia polymorpha
MBI06_g06467_MAGBIO Magnolia biondii
MBI08_g35876_MAGBIO Magnolia biondii
MBI14_g24800_MAGBIO Magnolia biondii
MBI16_g04069_MAGBIO Magnolia biondii
MBI18_g31936_MAGBIO Magnolia biondii
MD09G1242900 Malus domestica
MD15G1153100 Malus domestica
MD17G1235100 Malus domestica
Medtr2g090620 Medicago truncatula
Medtr2g460800 Medicago truncatula
Medtr4g078740 Medicago truncatula
MELO3C004426.2 Cucumis melo
MELO3C010233.2 Cucumis melo
MELO3C013582.2 Cucumis melo
Migut.K00334 Erythranthe guttata
Migut.M00140 Erythranthe guttata
MSTRG.26283 Avicennia marina
MSTRG.6123 Avicennia marina
Nitab4.5_0001478g0030 Nicotiana tabacum
Nitab4.5_0002315g0120 Nicotiana tabacum
Nitab4.5_0003076g0050 Nicotiana tabacum
Nitab4.5_0005188g0020 Nicotiana tabacum
Nitab4.5_0006527g0020 Nicotiana tabacum
Nitab4.5_0008993g0020 Nicotiana tabacum
Nn1g04212 Nelumbo nucifera
Nn1g06026 Nelumbo nucifera
Nn1g06431 Nelumbo nucifera
Nn1g06481 Nelumbo nucifera
Nn8g39864 Nelumbo nucifera
Oeu021272.1 Olea europaea
Oeu022447.1 Olea europaea
Os02g0302900 Oryza sativa ssp. japonica
Os08g0280600 Oryza sativa ssp. japonica
Peaxi162Scf00062g00314 Petunia axillaris
Peaxi162Scf00252g00119 Petunia axillaris
Peaxi162Scf00845g00225 Petunia axillaris
PGR042G3872 Punica granatum
PGR102G1057 Punica granatum
PGR142G3530 Punica granatum
PGSC0003DMG400007900 Solanum tuberosum
PGSC0003DMG400009375 Solanum tuberosum
PGSC0003DMG400011178 Solanum tuberosum
Phvul.005G040700 Phaseolus vulgaris
Phvul.005G101200 Phaseolus vulgaris
Phvul.009G206800 Phaseolus vulgaris
Phvul.011G125100 Phaseolus vulgaris
Potri.006G185700 Populus trichocarpa
Potri.007G137700 Populus trichocarpa
Potri.017G014300 Populus trichocarpa
Potri.018G108200 Populus trichocarpa
Pp3c12_15930 Physcomitrium patens
Pp3c4_8810 Physcomitrium patens
Prupe.3G132900 Prunus persica
Prupe.3G133200 Prunus persica
Prupe.7G261500 Prunus persica
Psat1g021960 Pisum sativum
Psat5g273160 Pisum sativum
Psat7g167920 Pisum sativum
PSO210G2819 Papaver somniferum
PSO339G5388 Papaver somniferum
PSO541G0651 Papaver somniferum
PSO782G3912 Papaver somniferum
PSO832G1271 Papaver somniferum
QL02p093024 Quercus lobata
QL08p039984 Quercus lobata
RcHm_v2.0_Chr1g0332871 Rosa chinensis
RcHm_v2.0_Chr2g0085811 Rosa chinensis
RcHm_v2.0_Chr2g0127351 Rosa chinensis
RcHm_v2.0_Chr6g0297131 Rosa chinensis
Rhsim06G0138400 Rhododendron simsii
Sabra06G0141000 Salix brachista
Sabra07G0110600 Salix brachista
Sabra17G0011500 Salix brachista
Sabra18G0091800 Salix brachista
SalBow1G7188 Salvia bowleyana
SalBow1G7717 Salvia bowleyana
SalBow7G2611 Salvia bowleyana
Sc06g0009290 Simmondsia chinensis
Sed0003676 Sechium edule
Sed0006701 Sechium edule
Sed0008209 Sechium edule
Sed0025284 Sechium edule
SEGI_08782 Sequoiadendron giganteum
SEGI_31990 Sequoiadendron giganteum
SGA_v2.0_scaffold14G07138 Striga asiatica
SGA_v2.0_scaffold206G41810 Striga asiatica
SGA_v2.0_scaffold70G23498 Striga asiatica
SMO356G0105 Selaginella moellendorffii
Solyc07g053700.4 Solanum lycopersicum
Solyc12g010120.2 Solanum lycopersicum
Sopen07g001310 Solanum pennellii
Sopen07g027670 Solanum pennellii
Sopen12g005000 Solanum pennellii
Sp3g33840 Schrenkiella parvula
Sp6g19660 Schrenkiella parvula
Sp7g26410 Schrenkiella parvula
TAR624G1372 Trochodendron aralioides
TAR625G1124 Trochodendron aralioides
TAR626G0309 Trochodendron aralioides
TAR636G1536 Trochodendron aralioides
THA.LOC104814507 Tarenaya hassleriana
THA.LOC104818119 Tarenaya hassleriana
THA.LOC104824691 Tarenaya hassleriana
Thecc.02G185000 Theobroma cacao
Thecc.09G032000 Theobroma cacao
Thhalv10001984m.g Eutrema salsugineum
Thhalv10013006m.g Eutrema salsugineum
TPR.G31935 Trifolium pratense
TPR.G6453 Trifolium pratense
TPR.G9344 Trifolium pratense
TWI23G1175 Tripterygium wilfordii
TWI34G1274 Tripterygium wilfordii
TWI59G0001 Tripterygium wilfordii
TWI63G0145 Tripterygium wilfordii
unitig_62.g23329 Utricularia gibba
unitig_748.g7199 Utricularia gibba
vmacro12334 Vaccinium macrocarpon
VMungo1080G0383 Vigna mungo
VMungo1080G0769 Vigna mungo
VMungo1127G0696 Vigna mungo
Zm00001eb177690 Zea mays
Zm00001eb203140 Zea mays

User provided reference genes

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