Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p27600 Brassica napus
A06p48130 Brassica napus
A07p40750 Brassica napus
Aa31LG4G5340 Aethionema arabicum
Aa31LG9G13080 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1605 Anthoceros agrestis
Actinidia19173 Actinidia chinensis
Actinidia22557 Actinidia chinensis
Actinidia29829 Actinidia chinensis
Actinidia29830 Actinidia chinensis
Actinidia38014 Actinidia chinensis
Ah.03g139430 Amaranthus hybridus
Ah.11g043170 Amaranthus hybridus
AL1G52820 Arabidopsis lyrata
AL2G35050 Arabidopsis lyrata
AL8G17810 Arabidopsis lyrata
Aqoxy6G01051 Aquilegia oxysepala
Aqoxy6G01056 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.19G7CF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F0DT7Y Arachis hypogaea
AT1G45170 Arabidopsis thaliana
AT1G75150 Arabidopsis thaliana
AT5G42960 Arabidopsis thaliana
ATR0733G028 Amborella trichopoda
ATR0733G232 Amborella trichopoda
Atru.chr11.1864 Acer truncatum
Atru.chr13.505 Acer truncatum
Atru.chr13.512 Acer truncatum
Atru.chr8.2604 Acer truncatum
AUR62003177 Chenopodium quinoa
AUR62007996 Chenopodium quinoa
AUR62034948 Chenopodium quinoa
AUR62035457 Chenopodium quinoa
AUR62038767 Chenopodium quinoa
AUR62038823 Chenopodium quinoa
BcaB07g30598 Brassica carinata
BcaC02g10786 Brassica carinata
BcaC03g16545 Brassica carinata
BcaC06g31735 Brassica carinata
BcaC08g46976 Brassica carinata
BolC2t10405H Brassica oleracea
BolC4t24014H Brassica oleracea
BolC6t39947H Brassica oleracea
BraA02t07793Z Brassica rapa
BraA06t27682Z Brassica rapa
BraA07t31617Z Brassica rapa
C02p43630 Brassica napus
C04p25100 Brassica napus
C06p49130 Brassica napus
CAN.G1126.43 Capsicum annuum
CAN.G1139.10 Capsicum annuum
CAN.G52.14 Capsicum annuum
CANSAT25G1534 Cannabis sativa
CANSAT25G1781 Cannabis sativa
CANSAT64G0901 Cannabis sativa
CARHR036260 Cardamine hirsuta
CARHR068480 Cardamine hirsuta
CARHR181060 Cardamine hirsuta
Carub.0001s3559 Capsella rubella
Carub.0002s2196 Capsella rubella
Carub.0008s0579 Capsella rubella
Ca_13347_v3 Cicer arietinum L.
Ca_15521_v3 Cicer arietinum L.
CBR_g28516 Chara braunii
CBR_g49402 Chara braunii
Cc04_g13560 Coffea canephora
Cc07_g09280 Coffea canephora
Cc10_g03050 Coffea canephora
Cc10_g03060 Coffea canephora
CDE01G0655 Ceratophyllum demersum
CDE02G0502 Ceratophyllum demersum
CDE02G2135 Ceratophyllum demersum
Cfa018138 Carpinus fangiana
Cfa018139 Carpinus fangiana
Ciclev10000375m.g Citrus clementina
Ciclev10002450m.g Citrus clementina
Ciclev10032759m.g Citrus clementina
CiPaw.01G035500 Carya illinoinensis
CiPaw.15G075800 Carya illinoinensis
CiPaw.15G075900 Carya illinoinensis
CiPaw.16G055600 Carya illinoinensis
ClCG05G019120 Citrullus lanatus
ClCG05G019130 Citrullus lanatus
COL.COLO4_26339 Corchorus olitorius
Cpa.g.sc1379.5 Carica papaya
Cpa.g.sc2093.1 Carica papaya
Cpa.g.sc64.73 Carica papaya
Cpa.g.sc64.74 Carica papaya
Cpa.g.sc64.75 Carica papaya
CsaV3_3G045010 Cucumis sativus L.
CsaV3_3G045020 Cucumis sativus L.
CSS0002761 Camellia sinensis var. sinensis
CSS0008789 Camellia sinensis var. sinensis
CSS0042168 Camellia sinensis var. sinensis
DCAR_008767 Daucus carota
DCAR_017249 Daucus carota
DCAR_019525 Daucus carota
DCAR_020967 Daucus carota
DCAR_020968 Daucus carota
Dinv26817 Davidia involucrata
Dinv36064 Davidia involucrata
Dinv36066 Davidia involucrata
Duzib041G0269 Durio zibethinus
Duzib093G1270 Durio zibethinus
Duzib093G1509 Durio zibethinus
Duzib116G0461 Durio zibethinus
Duzib116G0898 Durio zibethinus
Duzib251G0511 Durio zibethinus
ECA238G4749 Erigeron canadensis
ECA247G1990 Erigeron canadensis
ECA247G2410 Erigeron canadensis
EL10Ac1g01799 Beta vulgaris
EL10Ac1g01833 Beta vulgaris
EL10Ac6g14922 Beta vulgaris
Eucgr.F01905 Eucalyptus grandis
Eucgr.F01907 Eucalyptus grandis
FAN15G0789 Fragaria x ananassa
FAN20G2431 Fragaria x ananassa
FAN27G0841 Fragaria x ananassa
FAN27G2069 Fragaria x ananassa
FvH4_2g39970 Fragaria vesca
FvH4_2g39980 Fragaria vesca
Glyma.04G033100 Glycine max
Glyma.06G033100 Glycine max
Glyma.09G114000 Glycine max
Glyma.14G076000 Glycine max
Glyma.14G076100 Glycine max
Gohir.A01G116400 Gossypium hirsutum
Gohir.A03G078300 Gossypium hirsutum
Gohir.A05G195200 Gossypium hirsutum
Gohir.A05G259900 Gossypium hirsutum
Gohir.A05G321300 Gossypium hirsutum
Gohir.A06G010800 Gossypium hirsutum
Gohir.D01G104800 Gossypium hirsutum
Gohir.D02G094400 Gossypium hirsutum
Gohir.D05G198400 Gossypium hirsutum
Gohir.D05G261800 Gossypium hirsutum
Gohir.D05G323500 Gossypium hirsutum
Gohir.D06G008200 Gossypium hirsutum
Gorai.002G128800 Gossypium raimondii
Gorai.005G107300 Gossypium raimondii
Gorai.009G203500 Gossypium raimondii
Gorai.009G273700 Gossypium raimondii
Gorai.009G347200 Gossypium raimondii
Gorai.010G010900 Gossypium raimondii
GSVIVG01009687001 Vitis vinifera
GSVIVG01009688001 Vitis vinifera
HanXRQChr02g0042031 Helianthus annuus
HanXRQChr04g0105601 Helianthus annuus
HanXRQChr05g0139201 Helianthus annuus
HanXRQChr05g0139211 Helianthus annuus
HanXRQChr14g0440381 Helianthus annuus
Haze_17986 Corylus avellana
Hma1.2p1_0023F.1_g014890 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086480 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla
Hma1.2p1_0400F.1_g144615 Hydrangea macrophylla
Hma1.2p1_0469F.1_g159180 Hydrangea macrophylla
HPP92_007877 Vanilla planifolia
HPP92_007892 Vanilla planifolia
HPP92_014206 Vanilla planifolia
HPP92_018471 Vanilla planifolia
HPP92_018472 Vanilla planifolia
HPP92_018489 Vanilla planifolia
HPP92_026465 Vanilla planifolia
Hund16584 Selenicereus undatus
Hund17648 Selenicereus undatus
Hund27548 Selenicereus undatus
Hund27550 Selenicereus undatus
Lalb_Chr08g0245851 Lupinus albus
Lalb_Chr14g0369171 Lupinus albus
Lalb_Chr22g0355501 Lupinus albus
Lalb_Chr23g0266641 Lupinus albus
Lalb_Chr24g0399021 Lupinus albus
Lj1g0006718 Lotus japonicus
Lj2C449G12 Lonicera japonica
Lj4A785T29 Lonicera japonica
Lj4A785T30 Lonicera japonica
Lj5g0004004 Lotus japonicus
Lsat_1_v5_gn_1_17581 Lactuca sativa
Lsat_1_v5_gn_1_17601 Lactuca sativa
Lsat_1_v5_gn_2_76680 Lactuca sativa
Manes.01G191700 Manihot esculenta
Manes.05G161500 Manihot esculenta
Manes.05G161600 Manihot esculenta
Manes.18G028300 Manihot esculenta
Mapoly0013s0017 Marchantia polymorpha
Mapoly0032s0034 Marchantia polymorpha
MBI16_g17456_MAGBIO Magnolia biondii
MBI16_g35645_MAGBIO Magnolia biondii
MBI16_g36971_MAGBIO Magnolia biondii
MBI16_g45959_MAGBIO Magnolia biondii
MD01G1018700 Malus domestica
MD08G1033500 Malus domestica
MD08G1033600 Malus domestica
MD15G1030200 Malus domestica
MD15G1030300 Malus domestica
Medtr1g022050 Medicago truncatula
Medtr3g111740 Medicago truncatula
MELO3C003852.2 Cucumis melo
MELO3C003853.2 Cucumis melo
Migut.C00708 Erythranthe guttata
Migut.C00709 Erythranthe guttata
MSTRG.25160 Avicennia marina
Nitab4.5_0000110g0550 Nicotiana tabacum
Nitab4.5_0000523g0050 Nicotiana tabacum
Nitab4.5_0000790g0140 Nicotiana tabacum
Nitab4.5_0001827g0130 Nicotiana tabacum
Nitab4.5_0002296g0030 Nicotiana tabacum
Nitab4.5_0003783g0010 Nicotiana tabacum
Nitab4.5_0006995g0020 Nicotiana tabacum
Nn1g05063 Nelumbo nucifera
Nn1g05064 Nelumbo nucifera
Nn5g29542 Nelumbo nucifera
Nn5g29546 Nelumbo nucifera
Oeu002842.1 Olea europaea
Oeu009869.1 Olea europaea
Oeu016743.1 Olea europaea
Oeu036193.1 Olea europaea
Os03g0855600 Oryza sativa ssp. japonica
Peaxi162Scf00064g00434 Petunia axillaris
Peaxi162Scf00515g00222 Petunia axillaris
Peaxi162Scf00690g00121 Petunia axillaris
Peaxi162Scf00925g00033 Petunia axillaris
PGR031G0525 Punica granatum
PGR031G3893 Punica granatum
PGR083G0986 Punica granatum
PGSC0003DMG400005143 Solanum tuberosum
PGSC0003DMG400007581 Solanum tuberosum
PGSC0003DMG400012687 Solanum tuberosum
PGSC0003DMG401015455 Solanum tuberosum
Phvul.001G015300 Phaseolus vulgaris
Phvul.009G057000 Phaseolus vulgaris
Potri.002G262700 Populus trichocarpa
Potri.002G262800 Populus trichocarpa
Potri.014G181000 Populus trichocarpa
Pp3c15_24440 Physcomitrium patens
Pp3c7_550 Physcomitrium patens
Pp3c7_551 Physcomitrium patens
Pp3c9_25170 Physcomitrium patens
Prupe.1G381300 Prunus persica
Prupe.1G381400 Prunus persica
Psat0s2660g0080 Pisum sativum
Psat6g006400 Pisum sativum
PSO170G0091 Papaver somniferum
PSO528G0218 Papaver somniferum
PSO541G2605 Papaver somniferum
PSO541G3855 Papaver somniferum
PSO675G8956 Papaver somniferum
QL02p007944 Quercus lobata
QL02p007979 Quercus lobata
QL06p045526 Quercus lobata
RcHm_v2.0_Chr6g0300771 Rosa chinensis
RcHm_v2.0_Chr6g0300781 Rosa chinensis
Rhsim06G0034800 Rhododendron simsii
Rhsim07G0237200 Rhododendron simsii
Rhsim08G0113900 Rhododendron simsii
Sabra02G0199500 Salix brachista
Sabra02G0199600 Salix brachista
Sabra14G0141100 Salix brachista
SalBow7G2089 Salvia bowleyana
SalBow7G3154 Salvia bowleyana
Sc02g0006290 Simmondsia chinensis
Sc15g0006880 Simmondsia chinensis
Sed0017102 Sechium edule
Sed0018102 Sechium edule
Sed0018900 Sechium edule
Sed0020001 Sechium edule
SEGI_00628 Sequoiadendron giganteum
SEGI_08825 Sequoiadendron giganteum
SGA_v2.0_scaffold48G18075 Striga asiatica
SHI17315 Sapria himalayana
SMO116G0302 Selaginella moellendorffii
SMO118G0069 Selaginella moellendorffii
SMO144G0024 Selaginella moellendorffii
SMO239G0158 Selaginella moellendorffii
Solyc04g080190.3 Solanum lycopersicum
Solyc07g025380.3 Solanum lycopersicum
Solyc09g018000.1 Solanum lycopersicum
Solyc12g089100.2 Solanum lycopersicum
Sopen04g033780 Solanum pennellii
Sopen07g013310 Solanum pennellii
Sopen12g030980 Solanum pennellii
Sp2g07710 Schrenkiella parvula
Sp5g30280 Schrenkiella parvula
TAR376G0546 Trochodendron aralioides
TAR381G0714 Trochodendron aralioides
TAR625G0668 Trochodendron aralioides
TAR636G1385 Trochodendron aralioides
THA.LOC104813840 Tarenaya hassleriana
THA.LOC104814160 Tarenaya hassleriana
THA.LOC104822842 Tarenaya hassleriana
Thecc.02G232300 Theobroma cacao
Thecc.08G024500 Theobroma cacao
Thecc.08G024600 Theobroma cacao
Thhalv10003270m.g Eutrema salsugineum
Thhalv10012286m.g Eutrema salsugineum
Thhalv10019843m.g Eutrema salsugineum
TPR.G12392 Trifolium pratense
TPR.G29753 Trifolium pratense
TWI12G0094 Tripterygium wilfordii
TWI36G0543 Tripterygium wilfordii
unitig_26.g9707 Utricularia gibba
unitig_37.g12967 Utricularia gibba
vmacro04518 Vaccinium macrocarpon
vmacro17851 Vaccinium macrocarpon
vmacro21629 Vaccinium macrocarpon
VMungo0647G1701 Vigna mungo
Zm00001eb061990 Zea mays
Zm00001eb064890 Zea mays
Zm00001eb210500 Zea mays
Zm00001eb212390 Zea mays

User provided reference genes

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