Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p40290 Brassica napus
A05p32200 Brassica napus
A08p37360 Brassica napus
A09p02330 Brassica napus
A10p01980 Brassica napus
Aa31LG1G9150 Aethionema arabicum
Aa31LG5G2560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1338 Anthoceros agrestis
Actinidia00718 Actinidia chinensis
Actinidia18865 Actinidia chinensis
Ah.02g121250 Amaranthus hybridus
Ah.03g147730 Amaranthus hybridus
Ah.08g212810 Amaranthus hybridus
AL1G12940 Arabidopsis lyrata
AL3G30740 Arabidopsis lyrata
AL6G49920 Arabidopsis lyrata
Aqoxy2G03171 Aquilegia oxysepala
Aqoxy5G00590 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3J53SH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3L2DDP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.83P0GW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KH9YDP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N8XVC3 Arachis hypogaea
AT1G03440 Arabidopsis thaliana
AT3G17640 Arabidopsis thaliana
AT4G03010 Arabidopsis thaliana
ATR0487G005 Amborella trichopoda
Atru.chr5.1312 Acer truncatum
Atru.chr8.1021 Acer truncatum
Atru.chr8.1030 Acer truncatum
AUR62034586 Chenopodium quinoa
AUR62036683 Chenopodium quinoa
BcaB01g01929 Brassica carinata
BcaB01g01930 Brassica carinata
BcaB01g01990 Brassica carinata
BcaB02g06932 Brassica carinata
BcaB04g18956 Brassica carinata
BcaB06g25827 Brassica carinata
BcaB06g25828 Brassica carinata
BcaC01g03743 Brassica carinata
BcaC03g15043 Brassica carinata
BcaC03g15044 Brassica carinata
BcaC05g24529 Brassica carinata
BcaC07g36968 Brassica carinata
BcaC09g48723 Brassica carinata
BcaNung00048 Brassica carinata
BolC2t07881H Brassica oleracea
BolC2t08665H Brassica oleracea
BolC3t17180H Brassica oleracea
BolC5t28972H Brassica oleracea
BolC5t33610H Brassica oleracea
BolC8t46856H Brassica oleracea
BolC9t53175H Brassica oleracea
BraA03t13181Z Brassica rapa
BraA05t22050Z Brassica rapa
BraA08t35633Z Brassica rapa
BraA09t35882Z Brassica rapa
BraA10t42471Z Brassica rapa
C03p49030 Brassica napus
C05p01930 Brassica napus
C05p48740 Brassica napus
C06p38490 Brassica napus
C08p00560 Brassica napus
C09p02450 Brassica napus
CAN.G1172.10 Capsicum annuum
CAN.G1682.5 Capsicum annuum
CAN.G275.5 Capsicum annuum
CANSAT25G0410 Cannabis sativa
CARHR002790 Cardamine hirsuta
CARHR092970 Cardamine hirsuta
CARHR251400 Cardamine hirsuta
Carub.0001s0257 Capsella rubella
Carub.0003s1735 Capsella rubella
Carub.0006s3404 Capsella rubella
Ca_08550_v3 Cicer arietinum L.
Ca_10387_v3 Cicer arietinum L.
Ca_16327_v3 Cicer arietinum L.
Cc00_g05090 Coffea canephora
Cc01_g19960 Coffea canephora
CDE02G4801 Ceratophyllum demersum
CDE05G1044 Ceratophyllum demersum
CDE08G0274 Ceratophyllum demersum
CDE09G0342 Ceratophyllum demersum
CDE09G0580 Ceratophyllum demersum
Cfa006062 Carpinus fangiana
Cfa023198 Carpinus fangiana
Ciclev10013859m.g Citrus clementina
Ciclev10020489m.g Citrus clementina
CiPaw.03G108700 Carya illinoinensis
CiPaw.07G097600 Carya illinoinensis
ClCG07G000150 Citrullus lanatus
ClCG09G006680 Citrullus lanatus
ClCG11G016950 Citrullus lanatus
COL.COLO4_08059 Corchorus olitorius
COL.COLO4_19996 Corchorus olitorius
Cpa.g.sc34.45 Carica papaya
Cpa.g.sc728.1 Carica papaya
Cpa.g.sc83.102 Carica papaya
CsaV3_4G032570 Cucumis sativus L.
CsaV3_6G037010 Cucumis sativus L.
CsaV3_7G028440 Cucumis sativus L.
CSS0014650 Camellia sinensis var. sinensis
CSS0019881 Camellia sinensis var. sinensis
CSS0022446 Camellia sinensis var. sinensis
DCAR_002773 Daucus carota
DCAR_005830 Daucus carota
DCAR_012446 Daucus carota
Dinv11277 Davidia involucrata
Dinv21377 Davidia involucrata
Dinv32977 Davidia involucrata
Duzib133G0448 Durio zibethinus
Duzib138G1771 Durio zibethinus
Duzib138G1773 Durio zibethinus
Duzib211G0630 Durio zibethinus
ECA240G4110 Erigeron canadensis
ECA247G3670 Erigeron canadensis
ECA248G3319 Erigeron canadensis
EL10Ac6g15332 Beta vulgaris
EL10Ac7g17174 Beta vulgaris
Eucgr.H01608 Eucalyptus grandis
Eucgr.H01609 Eucalyptus grandis
Eucgr.K03420 Eucalyptus grandis
FAN02G1357 Fragaria x ananassa
FAN05G3836 Fragaria x ananassa
FAN14G1207 Fragaria x ananassa
FAN15G3146 Fragaria x ananassa
FAN20G0726 Fragaria x ananassa
FAN24G1921 Fragaria x ananassa
FvH4_2g24330 Fragaria vesca
FvH4_6g39240 Fragaria vesca
Glyma.02G150900 Glycine max
Glyma.03G148500 Glycine max
Glyma.10G023100 Glycine max
Glyma.13G005800 Glycine max
Glyma.19G151800 Glycine max
Gohir.A08G071200 Gossypium hirsutum
Gohir.A08G184500 Gossypium hirsutum
Gohir.A11G155000 Gossypium hirsutum
Gohir.A12G007400 Gossypium hirsutum
Gohir.D08G079300 Gossypium hirsutum
Gohir.D08G202928 Gossypium hirsutum
Gohir.D11G161900 Gossypium hirsutum
Gohir.D12G006800 Gossypium hirsutum
Gorai.004G084400 Gossypium raimondii
Gorai.004G214500 Gossypium raimondii
Gorai.007G172200 Gossypium raimondii
Gorai.008G007000 Gossypium raimondii
GSVIVG01011042001 Vitis vinifera
GSVIVG01015897001 Vitis vinifera
HanXRQChr01g0002051 Helianthus annuus
HanXRQChr03g0092461 Helianthus annuus
HanXRQChr10g0283121 Helianthus annuus
HanXRQChr11g0339121 Helianthus annuus
HanXRQChr15g0466531 Helianthus annuus
Haze_04788 Corylus avellana
Haze_13662 Corylus avellana
Hma1.2p1_0209F.1_g089300 Hydrangea macrophylla
Hma1.2p1_0394F.1_g143340 Hydrangea macrophylla
Hma1.2p1_1651F.1_g295740 Hydrangea macrophylla
HPP92_011801 Vanilla planifolia
HPP92_016861 Vanilla planifolia
HPP92_016872 Vanilla planifolia
HPP92_016925 Vanilla planifolia
HPP92_018250 Vanilla planifolia
HPP92_025238 Vanilla planifolia
Lalb_Chr06g0163251 Lupinus albus
Lalb_Chr10g0093561 Lupinus albus
Lalb_Chr21g0306661 Lupinus albus
Lj1A846T67 Lonicera japonica
Lj1C41T11 Lonicera japonica
Lj1g0004302 Lotus japonicus
Lj2P1181T18 Lonicera japonica
Lj2P1220T26 Lonicera japonica
Lj5g0025828 Lotus japonicus
Lj6g0006396 Lotus japonicus
Lsat_1_v5_gn_3_125601 Lactuca sativa
Lsat_1_v5_gn_5_189941 Lactuca sativa
Lsat_1_v5_gn_9_1701 Lactuca sativa
Manes.01G212100 Manihot esculenta
Manes.05G070900 Manihot esculenta
Manes.16G000800 Manihot esculenta
Mapoly0019s0111 Marchantia polymorpha
MBI13_g01092_MAGBIO Magnolia biondii
MBI18_g16960_MAGBIO Magnolia biondii
MD03G1273000 Malus domestica
MD09G1144100 Malus domestica
MD11G1294000 Malus domestica
MD17G1130800 Malus domestica
Medtr1g089280 Medicago truncatula
Medtr3g082120 Medicago truncatula
Medtr7g094010 Medicago truncatula
MELO3C014415.2 Cucumis melo
MELO3C015878.2 Cucumis melo
MELO3C026359.2 Cucumis melo
Migut.D00246 Erythranthe guttata
Migut.H01258 Erythranthe guttata
Migut.N02130 Erythranthe guttata
MSTRG.12277 Avicennia marina
MSTRG.12582 Avicennia marina
MSTRG.17428 Avicennia marina
MSTRG.21590 Avicennia marina
Nitab4.5_0000170g0250 Nicotiana tabacum
Nitab4.5_0000807g0190 Nicotiana tabacum
Nitab4.5_0001949g0010 Nicotiana tabacum
Nitab4.5_0002093g0050 Nicotiana tabacum
Nitab4.5_0003058g0040 Nicotiana tabacum
Nitab4.5_0013083g0010 Nicotiana tabacum
Nn1g07301 Nelumbo nucifera
Nn1g09588 Nelumbo nucifera
Nn1g09589 Nelumbo nucifera
Nn3g21211 Nelumbo nucifera
Nn4g26099 Nelumbo nucifera
Nn4g26582 Nelumbo nucifera
Nn5g30649 Nelumbo nucifera
Nn7g38368 Nelumbo nucifera
Oeu001451.1 Olea europaea
Oeu002689.1 Olea europaea
Oeu036759.1 Olea europaea
Oeu045201.2 Olea europaea
Oeu047480.1 Olea europaea
Oeu048071.1 Olea europaea
Os05g0406800 Oryza sativa ssp. japonica
Os06g0478600 Oryza sativa ssp. japonica
Os11g0644100 Oryza sativa ssp. japonica
Peaxi162Scf00006g00386 Petunia axillaris
Peaxi162Scf01039g10028 Petunia axillaris
Peaxi162Scf01347g00012 Petunia axillaris
PGR044G0373 Punica granatum
PGR044G0680 Punica granatum
PGR119G0995 Punica granatum
PGSC0003DMG400003814 Solanum tuberosum
PGSC0003DMG400020178 Solanum tuberosum
PGSC0003DMG400044242 Solanum tuberosum
Phvul.001G146600 Phaseolus vulgaris
Phvul.006G003600 Phaseolus vulgaris
Phvul.007G167800 Phaseolus vulgaris
Potri.004G001000 Populus trichocarpa
Potri.011G023500 Populus trichocarpa
Potri.014G136100 Populus trichocarpa
Pp3c20_2070 Physcomitrium patens
Pp3c23_17120 Physcomitrium patens
Pp3c24_13240 Physcomitrium patens
Prupe.3G183800 Prunus persica
Prupe.8G249500 Prunus persica
Psat3g066640 Pisum sativum
Psat5g105960 Pisum sativum
Psat6g169160 Pisum sativum
PSO063G3055 Papaver somniferum
PSO210G7183 Papaver somniferum
PSO675G3263 Papaver somniferum
PSO732G0257 Papaver somniferum
PSO832G2547 Papaver somniferum
PSO832G2803 Papaver somniferum
QL04p063420 Quercus lobata
QL04p063546 Quercus lobata
QL12p023137 Quercus lobata
RcHm_v2.0_Chr2g0153081 Rosa chinensis
RcHm_v2.0_Chr6g0292211 Rosa chinensis
Rhsim13G0020500 Rhododendron simsii
Sabra04G0000300 Salix brachista
Sabra11G0014600 Salix brachista
Sabra14G0102600 Salix brachista
SalBow1G5924 Salvia bowleyana
SalBow3G3483 Salvia bowleyana
SalBow3G3812 Salvia bowleyana
SalBow6G0670 Salvia bowleyana
Sc07g0001910 Simmondsia chinensis
Sc17g0003810 Simmondsia chinensis
Sed0009000 Sechium edule
Sed0011168 Sechium edule
SEGI_15516 Sequoiadendron giganteum
SEGI_20469 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00431 Striga asiatica
SGA_v2.0_scaffold36G14370 Striga asiatica
SGA_v2.0_scaffold49G18369 Striga asiatica
SMO196G0148 Selaginella moellendorffii
SMO201G0190 Selaginella moellendorffii
SMO308G0056 Selaginella moellendorffii
SMO358G0047 Selaginella moellendorffii
Solyc06g084420.1 Solanum lycopersicum
Solyc07g042990.1 Solanum lycopersicum
Solyc09g074260.1 Solanum lycopersicum
Sopen06g035810 Solanum pennellii
Sopen07g022570 Solanum pennellii
Sopen09g029080 Solanum pennellii
Sp1g02410 Schrenkiella parvula
Sp3g15770 Schrenkiella parvula
Sp6g03050 Schrenkiella parvula
TAR365G0704 Trochodendron aralioides
TAR627G0423 Trochodendron aralioides
THA.LOC104808033 Tarenaya hassleriana
THA.LOC104823743 Tarenaya hassleriana
THA.LOC104826006 Tarenaya hassleriana
Thecc.01G175400 Theobroma cacao
Thecc.01G287100 Theobroma cacao
Thhalv10007833m.g Eutrema salsugineum
Thhalv10022092m.g Eutrema salsugineum
Thhalv10028712m.g Eutrema salsugineum
TPR.G13377 Trifolium pratense
TPR.G16936 Trifolium pratense
TPR.G23124 Trifolium pratense
TPR.G24342 Trifolium pratense
TWI14G1283 Tripterygium wilfordii
TWI23G0334 Tripterygium wilfordii
TWI32G1123 Tripterygium wilfordii
unitig_61.g26318 Utricularia gibba
vmacro02532 Vaccinium macrocarpon
VMungo0331G0104 Vigna mungo
VMungo0720G1483 Vigna mungo
VMungo1215G0364 Vigna mungo
VMungo1383G1954 Vigna mungo
Zm00001eb117580 Zea mays
Zm00001eb165940 Zea mays
Zm00001eb297430 Zea mays
Zm00001eb349640 Zea mays

User provided reference genes

Program Settings