Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p38970 Brassica napus
A07p24260 Brassica napus
A09p05620 Brassica napus
Aa31LG10G13230 Aethionema arabicum
Aa31LG11G9780 Aethionema arabicum
Actinidia13375 Actinidia chinensis
Actinidia14271 Actinidia chinensis
Actinidia15585 Actinidia chinensis
Actinidia16848 Actinidia chinensis
Actinidia16849 Actinidia chinensis
Actinidia35530 Actinidia chinensis
Actinidia40356 Actinidia chinensis
Ah.04g154900 Amaranthus hybridus
Ah.06g188910 Amaranthus hybridus
AL3G16480 Arabidopsis lyrata
AL4G22320 Arabidopsis lyrata
AL5G40410 Arabidopsis lyrata
AL6G38740 Arabidopsis lyrata
Aqoxy2G02804 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.32S0SQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GS40V4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LS1PSE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TMDK2E Arachis hypogaea
AT3G05750 Arabidopsis thaliana
AT3G58650 Arabidopsis thaliana
AT5G26910 Arabidopsis thaliana
ATR0706G239 Amborella trichopoda
Atru.chr2.146 Acer truncatum
Atru.chr4.2957 Acer truncatum
Atru.chr4.2958 Acer truncatum
Atru.chr4.2960 Acer truncatum
Atru.chr4.2961 Acer truncatum
AUR62000688 Chenopodium quinoa
AUR62005270 Chenopodium quinoa
AUR62016148 Chenopodium quinoa
AUR62035064 Chenopodium quinoa
AUR62042948 Chenopodium quinoa
AUR62043575 Chenopodium quinoa
BcaB02g06927 Brassica carinata
BcaB02g08244 Brassica carinata
BcaB02g08248 Brassica carinata
BcaB04g19708 Brassica carinata
BcaC03g17825 Brassica carinata
BcaC04g23673 Brassica carinata
BcaC05g29783 Brassica carinata
BcaC05g30091 Brassica carinata
BcaC08g44933 Brassica carinata
BolC2t11916H Brassica oleracea
BolC4t24952H Brassica oleracea
BolC5t34806H Brassica oleracea
BolC6t37724H Brassica oleracea
BolC7t44665H Brassica oleracea
BolC9t53540H Brassica oleracea
BraA02t08867Z Brassica rapa
BraA05t22944Z Brassica rapa
BraA07t30069Z Brassica rapa
BraA09t36204Z Brassica rapa
C02p58560 Brassica napus
C04p33850 Brassica napus
C05p61480 Brassica napus
C06p25610 Brassica napus
C07p41350 Brassica napus
C09p06200 Brassica napus
CANSAT54G2967 Cannabis sativa
CARHR000840 Cardamine hirsuta
CARHR080220 Cardamine hirsuta
CARHR169040 Cardamine hirsuta
CARHR186660 Cardamine hirsuta
Carub.0003s0512 Capsella rubella
Carub.0005s2544 Capsella rubella
Carub.0006s2453 Capsella rubella
Ca_01879_v3 Cicer arietinum L.
Ca_09296_v3 Cicer arietinum L.
Cc02_g34790 Coffea canephora
Cc03_g01150 Coffea canephora
CDE01G0564 Ceratophyllum demersum
CDE02G4579 Ceratophyllum demersum
CDE05G1689 Ceratophyllum demersum
CDE08G1078 Ceratophyllum demersum
Cfa006684 Carpinus fangiana
Cfa015480 Carpinus fangiana
Ciclev10000207m.g Citrus clementina
Ciclev10004258m.g Citrus clementina
CiPaw.01G142000 Carya illinoinensis
CiPaw.07G027700 Carya illinoinensis
ClCG02G015110 Citrullus lanatus
ClCG06G004760 Citrullus lanatus
COL.COLO4_04137 Corchorus olitorius
COL.COLO4_34666 Corchorus olitorius
COL.COLO4_34667 Corchorus olitorius
COL.COLO4_34668 Corchorus olitorius
COL.COLO4_34669 Corchorus olitorius
Cpa.g.sc48.141 Carica papaya
Cpa.g.sc9.96 Carica papaya
CsaV3_2G006910 Cucumis sativus L.
CsaV3_6G022550 Cucumis sativus L.
CSS0026202 Camellia sinensis var. sinensis
CSS0027216 Camellia sinensis var. sinensis
CSS0038073 Camellia sinensis var. sinensis
CSS0050364 Camellia sinensis var. sinensis
DCAR_002502 Daucus carota
DCAR_029362 Daucus carota
DCAR_030482 Daucus carota
Dinv02077 Davidia involucrata
Dinv24422 Davidia involucrata
Dinv30868 Davidia involucrata
Dinv44317 Davidia involucrata
Duzib052G1132 Durio zibethinus
Duzib128G1743 Durio zibethinus
Duzib151G0237 Durio zibethinus
Duzib177G1097 Durio zibethinus
Duzib212G0250 Durio zibethinus
ECA233G1181 Erigeron canadensis
ECA233G6262 Erigeron canadensis
ECA248G2020 Erigeron canadensis
EL10Ac3g04924 Beta vulgaris
EL10Ac4g09833 Beta vulgaris
Eucgr.A00199 Eucalyptus grandis
Eucgr.B01664 Eucalyptus grandis
Eucgr.L02809 Eucalyptus grandis
FAN02G0159 Fragaria x ananassa
FAN05G1103 Fragaria x ananassa
FAN07G1371 Fragaria x ananassa
FAN09G0805 Fragaria x ananassa
FAN09G3212 Fragaria x ananassa
FAN12G1009 Fragaria x ananassa
FAN12G1080 Fragaria x ananassa
FAN14G4042 Fragaria x ananassa
FvH4_4g19300 Fragaria vesca
FvH4_6g07210 Fragaria vesca
Glyma.03G232200 Glycine max
Glyma.07G242700 Glycine max
Glyma.09G039000 Glycine max
Glyma.10G148200 Glycine max
Glyma.15G144100 Glycine max
Glyma.15G144250 Glycine max
Glyma.17G031500 Glycine max
Glyma.19G229200 Glycine max
Glyma.20G239400 Glycine max
Gohir.A09G064500 Gossypium hirsutum
Gohir.A10G168400 Gossypium hirsutum
Gohir.A11G272300 Gossypium hirsutum
Gohir.A13G111700 Gossypium hirsutum
Gohir.D09G063300 Gossypium hirsutum
Gohir.D10G174600 Gossypium hirsutum
Gohir.D11G282500 Gossypium hirsutum
Gohir.D13G114600 Gossypium hirsutum
Gorai.006G078400 Gossypium raimondii
Gorai.007G305300 Gossypium raimondii
Gorai.011G195300 Gossypium raimondii
Gorai.013G128700 Gossypium raimondii
GSVIVG01031214001 Vitis vinifera
GSVIVG01035042001 Vitis vinifera
HanXRQChr01g0030571 Helianthus annuus
HanXRQChr02g0049811 Helianthus annuus
HanXRQChr09g0248801 Helianthus annuus
HanXRQChr13g0394391 Helianthus annuus
Haze_01085 Corylus avellana
Haze_04082 Corylus avellana
Hma1.2p1_0008F-1.1_g005780 Hydrangea macrophylla
Hma1.2p1_0013F.1_g008920 Hydrangea macrophylla
HPP92_002015 Vanilla planifolia
HPP92_011877 Vanilla planifolia
HPP92_011878 Vanilla planifolia
HPP92_018265 Vanilla planifolia
Hund02955 Selenicereus undatus
Hund07134 Selenicereus undatus
Hund11953 Selenicereus undatus
Hund21745 Selenicereus undatus
Lalb_Chr02g0147901 Lupinus albus
Lalb_Chr04g0260491 Lupinus albus
Lalb_Chr07g0182181 Lupinus albus
Lalb_Chr15g0077651 Lupinus albus
Lalb_Chr18g0046041 Lupinus albus
Lalb_Chr18g0058911 Lupinus albus
Lalb_Chr20g0120991 Lupinus albus
Lj1g0027492 Lotus japonicus
Lj3C827G8 Lonicera japonica
Lj5A337G18 Lonicera japonica
Lj6g0006757 Lotus japonicus
Lsat_1_v5_gn_1_44081 Lactuca sativa
Lsat_1_v5_gn_6_19241 Lactuca sativa
Lsat_1_v5_gn_6_19261 Lactuca sativa
Lsat_1_v5_gn_9_122541 Lactuca sativa
Manes.03G201600 Manihot esculenta
Manes.08G112600 Manihot esculenta
Manes.09G175400 Manihot esculenta
Manes.15G006700 Manihot esculenta
MBI18_g09596_MAGBIO Magnolia biondii
MBI19_g22896_MAGBIO Magnolia biondii
MBI19_g46294_MAGBIO Magnolia biondii
MD04G1195500 Malus domestica
MD12G1207600 Malus domestica
MD13G1158100 Malus domestica
MD16G1158900 Malus domestica
Medtr1g083850 Medicago truncatula
Medtr2g034810 Medicago truncatula
Medtr7g112030 Medicago truncatula
MELO3C004200.2 Cucumis melo
MELO3C021285.2 Cucumis melo
Migut.B00995 Erythranthe guttata
Migut.N00058 Erythranthe guttata
MSTRG.16398 Avicennia marina
MSTRG.20398 Avicennia marina
MSTRG.24813 Avicennia marina
MSTRG.3871 Avicennia marina
Nitab4.5_0000169g0020 Nicotiana tabacum
Nitab4.5_0000368g0290 Nicotiana tabacum
Nitab4.5_0001695g0010 Nicotiana tabacum
Nitab4.5_0006072g0010 Nicotiana tabacum
Nn3g21631 Nelumbo nucifera
Nn4g25653 Nelumbo nucifera
Oeu006438.1 Olea europaea
Oeu016267.1 Olea europaea
Oeu016480.1 Olea europaea
Oeu019953.1 Olea europaea
Oeu045891.1 Olea europaea
Os03g0302900 Oryza sativa ssp. japonica
Os03g0831700 Oryza sativa ssp. japonica
Peaxi162Scf00065g00328 Petunia axillaris
Peaxi162Scf00673g00028 Petunia axillaris
PGR031G3854 Punica granatum
PGSC0003DMG400002807 Solanum tuberosum
PGSC0003DMG400014987 Solanum tuberosum
PGSC0003DMG400041351 Solanum tuberosum
Phvul.001G225800 Phaseolus vulgaris
Phvul.003G110900 Phaseolus vulgaris
Phvul.007G200300 Phaseolus vulgaris
Phvul.009G254000 Phaseolus vulgaris
Potri.005G019700 Populus trichocarpa
Potri.008G108600 Populus trichocarpa
Potri.010G140900 Populus trichocarpa
Potri.013G010500 Populus trichocarpa
Potri.T171201 Populus trichocarpa
Pp3c2_13420 Physcomitrium patens
Prupe.1G125400 Prunus persica
Prupe.6G315200 Prunus persica
Psat0ss1494g0040 Pisum sativum
Psat0ss9276g0080 Pisum sativum
Psat1g159720 Pisum sativum
Psat3g013120 Pisum sativum
PSO210G6724 Papaver somniferum
PSO210G7621 Papaver somniferum
PSO761G0478 Papaver somniferum
QL03p018272 Quercus lobata
QL06p011361 Quercus lobata
RcHm_v2.0_Chr3g0456841 Rosa chinensis
RcHm_v2.0_Chr4g0424321 Rosa chinensis
Rhsim04G0232500 Rhododendron simsii
Rhsim11G0093800 Rhododendron simsii
Sabra05G0013200 Salix brachista
Sabra05G0026000 Salix brachista
Sabra08G0082300 Salix brachista
Sabra10G0108900 Salix brachista
Sabra13G0009100 Salix brachista
SalBow7G1336 Salvia bowleyana
SalBow8G0670 Salvia bowleyana
SalBow8G0820 Salvia bowleyana
Sc09g0002700 Simmondsia chinensis
Sc19g0003440 Simmondsia chinensis
Sed0009638 Sechium edule
Sed0010663 Sechium edule
Sed0021161 Sechium edule
Sed0024614 Sechium edule
SEGI_10040 Sequoiadendron giganteum
SGA_v2.0_scaffold107G30799 Striga asiatica
SGA_v2.0_scaffold119G32677 Striga asiatica
SGA_v2.0_scaffold157G37419 Striga asiatica
SGA_v2.0_scaffold157G37421 Striga asiatica
SGA_v2.0_scaffold444G51708 Striga asiatica
SGA_v2.0_scaffold4G01952 Striga asiatica
SHI00157 Sapria himalayana
SHI18071 Sapria himalayana
SMO165G0117 Selaginella moellendorffii
Solyc01g060410.4 Solanum lycopersicum
Solyc01g100290.4 Solanum lycopersicum
Solyc10g017790.1 Solanum lycopersicum
Sopen01g026550 Solanum pennellii
Sopen01g043810 Solanum pennellii
Sp2g21130 Schrenkiella parvula
Sp3g04640 Schrenkiella parvula
Sp5g04200 Schrenkiella parvula
TAR365G0698 Trochodendron aralioides
TAR636G1488 Trochodendron aralioides
THA.LOC104802701 Tarenaya hassleriana
THA.LOC104803105 Tarenaya hassleriana
THA.LOC104818745 Tarenaya hassleriana
THA.LOC104821738 Tarenaya hassleriana
Thecc.04G295400 Theobroma cacao
Thecc.05G320800 Theobroma cacao
Thhalv10003651m.g Eutrema salsugineum
Thhalv10005788m.g Eutrema salsugineum
Thhalv10020097m.g Eutrema salsugineum
TPR.G11391 Trifolium pratense
TPR.G1651 Trifolium pratense
TPR.G2607 Trifolium pratense
TPR.G30869 Trifolium pratense
TWI36G1140 Tripterygium wilfordii
TWI53G1428 Tripterygium wilfordii
TWI73G0849 Tripterygium wilfordii
unitig_37.g12408 Utricularia gibba
unitig_52.g17117 Utricularia gibba
unitig_699.g19667 Utricularia gibba
unitig_749.g13375 Utricularia gibba
vmacro01552 Vaccinium macrocarpon
vmacro08075 Vaccinium macrocarpon
VMungo0720G2097 Vigna mungo
VMungo1215G1777 Vigna mungo
VMungo1309G1815 Vigna mungo
VMungo1383G2889 Vigna mungo
Zm00001eb014240 Zea mays
Zm00001eb020440 Zea mays
Zm00001eb063650 Zea mays
Zm00001eb127740 Zea mays
Zm00001eb211190 Zea mays
Zm00001eb396410 Zea mays

User provided reference genes

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